Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E11
(355 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 (So... 30 1.7
sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 (So... 30 1.7
>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 (Solute carrier family 44 member
5)
Length = 717
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +3
Query: 153 ISTGGIDLMIRMMFKLIPGTLISLNYLKHRLMMNGGKIKRDICKTFVYC*YVAAFYCI*C 332
++ G + + + MFK++ L YL HRL + + F+ C F+C+
Sbjct: 516 LAFGSLIIALIQMFKIV------LEYLNHRLKRTENTLSK-----FLQCCLRCCFWCLEN 564
Query: 333 LIKFIN 350
IKF+N
Sbjct: 565 AIKFLN 570
>sp|Q8NCS7|CTL5_HUMAN Choline transporter-like protein 5 (Solute carrier family 44 member
5)
Length = 719
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +3
Query: 153 ISTGGIDLMIRMMFKLIPGTLISLNYLKHRLMMNGGKIKRDICKTFVYC*YVAAFYCI*C 332
++ G + + + MFK++ L YL HRL K ++ F+ C F+C+
Sbjct: 516 LAFGSLIIALIQMFKIV------LEYLDHRL-----KRTQNTLSKFLQCCLRCCFWCLEN 564
Query: 333 LIKFIN 350
IKF+N
Sbjct: 565 AIKFLN 570
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,702,462
Number of Sequences: 369166
Number of extensions: 370835
Number of successful extensions: 848
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)