Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E08
(814 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cy... 375 e-104
sp|P20007|PPCK_DROME Phosphoenolpyruvate carboxykinase [GTP... 375 e-104
sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cy... 375 e-104
sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cy... 374 e-103
sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cy... 373 e-103
sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cyto... 370 e-102
sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cy... 366 e-101
sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mi... 365 e-101
sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mi... 365 e-100
sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP... 342 9e-94
>sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 375 bits (964), Expect = e-104
Identities = 181/270 (67%), Positives = 204/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
++G LRAINPE GFFGVAPGTS TNPNA+K IQ+NTIFTNVAETSDGG YWEG+ DE
Sbjct: 319 AQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGI-DEPL 377
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ I W+ K W+ G AHPNSRFC PASQCPIID WESP GVPI +IFGGRR
Sbjct: 378 ASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRR 437
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P GVPLVYE L+WQHGVF GA +RSEATAAAEHKGK++M+DPFAMRPFFGYNFG YL HW
Sbjct: 438 PAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHW 497
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS A KLP+I+HVNWFRK KE G FLWPGFGENSRVL+W+ R+ GKA T +G
Sbjct: 498 LSMAQHPAAKLPKIFHVNWFRKDKE-GKFLWPGFGENSRVLEWMFNRIDGKASTKLTPIG 556
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
IP+ + LNL GL ELFS+ EF
Sbjct: 557 YIPKEDALNLKGL--GHINMMELFSISKEF 584
>sp|P20007|PPCK_DROME Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 647
Score = 375 bits (963), Expect = e-104
Identities = 178/270 (65%), Positives = 214/270 (79%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
S+G LRAINPE GFFGVAPGTS TNP AM + +NTIFTNVA TSDGG +WEG+E +
Sbjct: 345 SQGVLRAINPENGFFGVAPGTSMETNPIAMNTVFKNTIFTNVASTSDGGVFWEGMESSL- 403
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
N++I DW GKPWTK+ G+ AAHPNSRFC PA+QCPIID+ WE P GVPISA++FGGRR
Sbjct: 404 APNVQITDWLGKPWTKDSGKPAAHPNSRFCTPAAQCPIIDEAWEDPAGVPISAMLFGGRR 463
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P GVPL+YE +W HGVF GA +RSEATAAAEHKGKV+M+DPFAMRPFFGYNFGDY+ HW
Sbjct: 464 PAGVPLIYEARDWTHGVFIGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGDYVAHW 523
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS E ++P+I+HVNWFRKS E G F+WPG+GENSRVL+WI +RV G++ + +A+G
Sbjct: 524 LSM--EKRGQVPKIFHVNWFRKSAE-GKFMWPGYGENSRVLEWILRRVNGESCYVDSAIG 580
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
IP LNL G+K + KE+FSLP EF
Sbjct: 581 HIPAEGALNLDGMK-DKVDVKEIFSLPKEF 609
>sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 375 bits (963), Expect = e-104
Identities = 181/270 (67%), Positives = 204/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
++G LRAINPE GFFGVAPGTS TNPNA+K IQ+NTIFTNVAETSDGG YWEG+ DE
Sbjct: 319 AQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGI-DEPL 377
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ I W+ K W+ G AHPNSRFC PASQCPIID WESP GVPI +IFGGRR
Sbjct: 378 ASGVTITSWKNKEWSPEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRR 437
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P GVPLVYE L+WQHGVF GA +RSEATAAAEHKGK++M+DPFAMRPFFGYNFG YL HW
Sbjct: 438 PAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHW 497
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS A KLP+I+HVNWFRK KE G FLWPGFGENSRVL+W+ R+ GKA T +G
Sbjct: 498 LSMAQHPAAKLPKIFHVNWFRKDKE-GKFLWPGFGENSRVLEWMFNRIDGKAGAKLTPIG 556
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
IP+ + LNL GL ELFS+ EF
Sbjct: 557 YIPKEDALNLKGL--GHINVMELFSISKEF 584
>sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 374 bits (959), Expect = e-103
Identities = 176/268 (65%), Positives = 204/268 (76%)
Frame = +3
Query: 9 GSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVDLD 188
G+LRAINPE GFFGVAPGTS TNPNA+K I +NTIFTNVAETSDGG YWEG+++ +
Sbjct: 321 GNLRAINPENGFFGVAPGTSIKTNPNAIKTIFKNTIFTNVAETSDGGVYWEGIDEPLP-P 379
Query: 189 NLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRRPE 368
+ + W+ K WT + G AHPNSRFC PASQCPI+D WESP GVPI +IFGGRRP
Sbjct: 380 GVTLTSWKNKDWTPDNGEPCAHPNSRFCTPASQCPIMDPAWESPEGVPIEGIIFGGRRPA 439
Query: 369 GVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHWLS 548
GVPLVYE NWQHGVF GA +RSEATAAAEHKGK++M+DPFAMRPFFGYNFG YL HWLS
Sbjct: 440 GVPLVYEAFNWQHGVFIGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLS 499
Query: 549 FAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVGII 728
AH KLPRI+HVNWFRK + G FLWPG+GENSRVL+W+ R+ GKA TA+G I
Sbjct: 500 MAHRPAAKLPRIFHVNWFRKDSQ-GKFLWPGYGENSRVLEWMFNRIQGKASAKSTAIGYI 558
Query: 729 PRFEELNLSGLKITEKQYKELFSLPSEF 812
P LNL GL+ + ELF++ EF
Sbjct: 559 PADTALNLKGLE--DINLTELFNISKEF 584
>sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 373 bits (957), Expect = e-103
Identities = 179/270 (66%), Positives = 203/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
++G+LRAINPE GFFGVAPGTS TNPNA+K IQ+NTIFTNVAETSDGG YWEG+ DE
Sbjct: 319 AQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGI-DEPL 377
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ I W+ K W AHPNSRFC PASQCPIID WESP GVPI +IFGGRR
Sbjct: 378 APGVTITSWKNKEWRPQDAEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRR 437
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
PEGVPLVYE L+WQHGVF GA +RSEATAAAEHKGK++M+DPFAMRPFFGYNFG YL HW
Sbjct: 438 PEGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHW 497
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS AH KLP+I+HVNWFRK K DG FLWPGFGENSRVL+W+ R+ G+ T +G
Sbjct: 498 LSMAHRPAAKLPKIFHVNWFRKDK-DGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIG 556
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
IP+ LNL GL +ELF + EF
Sbjct: 557 YIPKENALNLKGL--GGVNVEELFGISKEF 584
>sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 370 bits (950), Expect = e-102
Identities = 177/270 (65%), Positives = 204/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
++G+LRAINPE GFFGVAPGTS TNPNA+K IQ+NTIFTNVAETSDGG YWEG+ DE
Sbjct: 319 AQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGI-DEPL 377
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ I W+ K W AHPNSRFC PASQCPIID WESP GVPI +IFGGRR
Sbjct: 378 APGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIFGGRR 437
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P GVPLVYE L+WQHGVF GA +RSEATAAAEHKGKV+M+DPFAMRPFFGYNFG YL HW
Sbjct: 438 PAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGKYLAHW 497
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS AH KLP+I+HVNWFRK K +G FLWPGFGENSRVL+W+ R+ G+ T +G
Sbjct: 498 LSMAHRPAAKLPKIFHVNWFRKDK-NGKFLWPGFGENSRVLEWMFGRIEGEDSAKLTPIG 556
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
+P+ + LNL GL + +ELF + EF
Sbjct: 557 YVPKEDALNLKGL--GDVNVEELFGISKEF 584
>sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 366 bits (940), Expect = e-101
Identities = 176/269 (65%), Positives = 204/269 (75%)
Frame = +3
Query: 6 KGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVDL 185
+G+LRAINPE GFFGVAPGTS TNPNA+K IQ+NTIFTNVAETSDGG YWEG++ +
Sbjct: 320 QGNLRAINPENGFFGVAPGTSVRTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDQPLAA 379
Query: 186 DNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRRP 365
+++I W+GK W G AHPNSRFC PASQCPIID +WESP GVPI +IFGGRRP
Sbjct: 380 -RVKLISWKGKEWDPKDGEPCAHPNSRFCTPASQCPIIDPDWESPEGVPIEGIIFGGRRP 438
Query: 366 EGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHWL 545
GVPLVYE L+WQHGVF GA +RSEATAAAE+KGKV+M+DPFAM PFFGYNFG YL HWL
Sbjct: 439 VGVPLVYEALSWQHGVFVGAAMRSEATAAAEYKGKVIMHDPFAMGPFFGYNFGQYLAHWL 498
Query: 546 SFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVGI 725
S A KLP+I+HVNWFRK K G FLWPGFGENSRVL+W+ RV G+ T +G
Sbjct: 499 SMAQRPAAKLPKIFHVNWFRKDKA-GRFLWPGFGENSRVLEWMFNRVVGEGGASVTPIGY 557
Query: 726 IPRFEELNLSGLKITEKQYKELFSLPSEF 812
IP + L+L GL + KELF + EF
Sbjct: 558 IPDEDALDLRGL--GDVDVKELFHISKEF 584
>sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 365 bits (938), Expect = e-101
Identities = 170/270 (62%), Positives = 205/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
S+G LRAINPE GFFGVAPGTS +TNPNAM IQ NTIFTNVAETSDGG YWEG++ +
Sbjct: 337 SEGRLRAINPENGFFGVAPGTSATTNPNAMATIQSNTIFTNVAETSDGGVYWEGIDQPLP 396
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ + W GKPW AHPNSRFC PA QCPI+D WE+P GVPI A+IFGGRR
Sbjct: 397 -PGVTVTSWLGKPWKPGDKEPCAHPNSRFCAPARQCPIMDPAWEAPEGVPIDAIIFGGRR 455
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P+GVPLVYE NW+HGVF G +RSE+TAAAEHKGK++M+DPFAMRPFFGYNFG YL+HW
Sbjct: 456 PKGVPLVYEAFNWRHGVFVGRAMRSESTAAAEHKGKIIMHDPFAMRPFFGYNFGHYLEHW 515
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS +LPRI+HVNWFR+ E G FLWPGFGEN+RVLDWI +R+ G+ +T +G
Sbjct: 516 LSMEGRKGAQLPRIFHVNWFRRD-EAGHFLWPGFGENARVLDWICRRLEGEDSARETPIG 574
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
++P+ L+LSGL+ + +LFSLP +F
Sbjct: 575 LVPKEGALDLSGLRAIDT--TQLFSLPKDF 602
>sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 365 bits (936), Expect = e-100
Identities = 169/270 (62%), Positives = 205/270 (75%)
Frame = +3
Query: 3 SKGSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVD 182
S+G LRAINPE GFFGVAPGTS +TNPNAM IQ NT+FTNVAETSDGG YWEG++ +
Sbjct: 337 SEGQLRAINPENGFFGVAPGTSAATNPNAMATIQSNTLFTNVAETSDGGVYWEGIDQPLP 396
Query: 183 LDNLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRR 362
+ I W GKPW AHPNSRFC PA QCPI+D WE+P GVPI A+IFGGRR
Sbjct: 397 -PGVTITSWLGKPWKPGDKEPCAHPNSRFCVPARQCPIMDPAWEAPEGVPIDAIIFGGRR 455
Query: 363 PEGVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHW 542
P+GVPLVYE NW+HGVF G+ +RSE+TAAAEHKGK +M+DPFAMRPFFGYNFG YL+HW
Sbjct: 456 PKGVPLVYEAFNWRHGVFVGSAMRSESTAAAEHKGKTIMHDPFAMRPFFGYNFGRYLEHW 515
Query: 543 LSFAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKAMGLKTAVG 722
LS + +LPRI+HVNWFR+ E G FLWPGFGEN+RVLDWI +R+ G+ +T +G
Sbjct: 516 LSMEGQKGARLPRIFHVNWFRRD-EAGRFLWPGFGENARVLDWICRRLEGEDSAQETPIG 574
Query: 723 IIPRFEELNLSGLKITEKQYKELFSLPSEF 812
++P+ L+LSGL + +LFS+P +F
Sbjct: 575 LVPKEGALDLSGLSAVDT--SQLFSIPKDF 602
>sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 619
Score = 342 bits (876), Expect = 9e-94
Identities = 159/269 (59%), Positives = 202/269 (75%), Gaps = 1/269 (0%)
Frame = +3
Query: 9 GSLRAINPEAGFFGVAPGTSHSTNPNAMKCIQRNTIFTNVAETSDGGYYWEGLEDEVDLD 188
G L AINPE GFFGVAPGTS TNP A+ Q+N+IFTNV ET++G Y+WEGLEDE+
Sbjct: 316 GRLYAINPEYGFFGVAPGTSKKTNPMAVATFQKNSIFTNVGETANGEYFWEGLEDEIKDK 375
Query: 189 NLEIIDWQGKPWTKNCGRVAAHPNSRFCCPASQCPIIDKNWESPNGVPISAVIFGGRRPE 368
N+++I+W G+ W + AHPNSRF PASQCPII WESP GVPI A+IFGGRRP
Sbjct: 376 NVDMINWLGEKWRIGDPGLCAHPNSRFAAPASQCPIIHPEWESPKGVPIDAIIFGGRRPA 435
Query: 369 GVPLVYETLNWQHGVFTGACVRSEATAAAEHKGKVVMNDPFAMRPFFGYNFGDYLKHWLS 548
GVPLV+ET +W HG+FTGAC++SEATAAAEHKGK VM+DP AMRPF GYNFG YL+HW+
Sbjct: 436 GVPLVFETRSWLHGIFTGACLKSEATAAAEHKGKTVMHDPMAMRPFMGYNFGHYLQHWID 495
Query: 549 FAHESHYKLPRIYHVNWFRKSKEDGSFLWPGFGENSRVLDWIAKRVAGKA-MGLKTAVGI 725
+ K+P+IYHVNWFR+ + FLWPG+G+N RV+DWI +R+ G+ +G+ T +GI
Sbjct: 496 LNKDGR-KVPKIYHVNWFRRD-ANNKFLWPGYGQNIRVIDWIVRRLDGEPDIGVDTPIGI 553
Query: 726 IPRFEELNLSGLKITEKQYKELFSLPSEF 812
+P+ +N SGL + Q+ EL S+P E+
Sbjct: 554 VPKKGAINASGL--PDIQWDELMSVPKEY 580
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,816,876
Number of Sequences: 369166
Number of extensions: 2010560
Number of successful extensions: 5950
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5791
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)