Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_E05
(321 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q04671|P_HUMAN P protein (Melanocyte-specific transporte... 29 2.9
sp|P54676|PI3K4_DICDI Phosphatidylinositol 3-kinase VPS34-l... 29 3.8
sp|Q24048|ATPB2_DROME Sodium/potassium-transporting ATPase ... 29 3.8
sp|P38650|DYHC_RAT Dynein heavy chain, cytosolic (DYHC) (Cy... 28 6.5
sp|Q9JHU4|DYHC_MOUSE Dynein heavy chain, cytosolic (DYHC) (... 28 6.5
sp|Q14204|DYHC_HUMAN Dynein heavy chain, cytosolic (DYHC) (... 28 6.5
sp|O74486|WTF19_SCHPO Hypothetical protein wtf19 28 6.5
sp|Q9H9P2|CHODL_HUMAN Chondrolectin precursor (Transmembran... 28 8.5
sp|P31370|POU1_DUGJA POU domain protein 1 (DjPOU1) 28 8.5
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 28 8.5
>sp|Q04671|P_HUMAN P protein (Melanocyte-specific transporter protein) (Pink-eyed
dilution protein homolog)
Length = 838
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 54 AYNGYPEMWKTIDADMAKYKNCKLQRNYDTYYRDKYTKCSPVYSPYTVDSKQDW 215
+++ P+M + D +N L RN ++K ++C PVY P + +++ W
Sbjct: 77 SHSSLPQMSSSRSKDSCFTENTPLLRNS---LQEKGSRCIPVYHPEFITAEESW 127
>sp|P54676|PI3K4_DICDI Phosphatidylinositol 3-kinase VPS34-like (PI3-kinase)
(PtdIns-3-kinase) (PI3K)
Length = 816
Score = 28.9 bits (63), Expect = 3.8
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Frame = +1
Query: 67 IQKCGKLSMLIWQNIKTASYKET-----------MIHIIEINIQNVRQFILHILWIVNKT 213
I++ GK +LIWQ+ + KET + ++ + R+ I H W+ +K
Sbjct: 139 IERKGKHKLLIWQDREGDGEKETTTPGQIQGKDEQYRLEKLKKKYDRKLINHCQWL-DKF 197
Query: 214 GLNTFQLLSHVEVAVNN*LYHFNQAFLNLK 303
LN + LS ++N NQ +L ++
Sbjct: 198 SLNEIERLSRASESLNK-----NQIYLTIE 222
>sp|Q24048|ATPB2_DROME Sodium/potassium-transporting ATPase beta-2 chain
(Sodium/potassium-dependent ATPase beta-2 subunit)
(Protein nervana 2)
Length = 323
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +3
Query: 36 QTEYPTAYNGYPEMWKTIDADMAKYKNCKLQRNYDTYYRDK---YTKCSPVYS--PYTVD 200
Q Y YN P + D D+ + C + NY +Y++ + K + +Y P +
Sbjct: 148 QNIYNCDYNQPPPKGQVCDVDIKTWSPCTKENNY-SYHKSAPCIFLKLNKIYGWIPEYYN 206
Query: 201 SKQDWPQHVPATI 239
D P ++PA++
Sbjct: 207 RSNDLPANMPASL 219
>sp|P38650|DYHC_RAT Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein heavy chain)
(MAP 1C)
Length = 4644
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 72 EMWKTIDADMAKYKN-CKLQRNYDTYYRD--------KYTKCSPVYSPYTVDS 203
E+W T + D+ Y+N C+L R +D + K SP Y + D+
Sbjct: 1466 EVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYYKVFEEDA 1518
>sp|Q9JHU4|DYHC_MOUSE Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein heavy chain)
Length = 4644
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 72 EMWKTIDADMAKYKN-CKLQRNYDTYYRD--------KYTKCSPVYSPYTVDS 203
E+W T + D+ Y+N C+L R +D + K SP Y + D+
Sbjct: 1466 EVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYYKVFEEDA 1518
>sp|Q14204|DYHC_HUMAN Dynein heavy chain, cytosolic (DYHC) (Cytoplasmic dynein heavy chain
1) (DHC1)
Length = 4646
Score = 28.1 bits (61), Expect = 6.5
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 72 EMWKTIDADMAKYKN-CKLQRNYDTYYRD--------KYTKCSPVYSPYTVDS 203
E+W T + D+ Y+N C+L R +D + K SP Y + D+
Sbjct: 1468 EVWNTYELDLVNYQNKCRLIRGWDDLFNKVKEHINSVSAMKLSPYYKVFEEDA 1520
>sp|O74486|WTF19_SCHPO Hypothetical protein wtf19
Length = 393
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Frame = +1
Query: 46 IQLLTMVIQKCGKLS-MLIWQNIK-TASYKETMIHIIEINIQNVRQFILHILWIV 204
+++ ++ + KC KL+ + + Q +K TA + + +I I + N+R+ ++ I+W++
Sbjct: 187 VKVTSISLAKCVKLTAVFLAQCVKVTAVFLAQCVKVISIGLFNIRREMMIIIWLL 241
>sp|Q9H9P2|CHODL_HUMAN Chondrolectin precursor (Transmembrane protein MT75)
Length = 273
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 117 CKLQRNYDTYYRDKYTKCSPVYSPYTVDSKQDWPQHVPATIA 242
C ++ NY Y + +PV PY + D Q+V T A
Sbjct: 170 CNMKHNYICKYEPEINPTAPVEKPYLTNQPGDTHQNVVVTEA 211
>sp|P31370|POU1_DUGJA POU domain protein 1 (DjPOU1)
Length = 559
Score = 27.7 bits (60), Expect = 8.5
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 48 PTAYNGYPEMWKTIDADMAKYKN 116
P+ +NG PE W DA+++ + N
Sbjct: 51 PSLFNGLPEEWGPTDAELSTHSN 73
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 159 YTKCSPVYSPYTVDSKQDWPQHVPATIACRS 251
Y SP SP ++ KQ+ P+++PA CRS
Sbjct: 395 YVPDSPALSP--IELKQELPKYLPALQGCRS 423
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,978,783
Number of Sequences: 369166
Number of extensions: 676602
Number of successful extensions: 2282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2278
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)