Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D17
(596 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SW... 30 4.6
sp|O05714|DNAK_ANAVA Chaperone protein dnaK (Heat shock pro... 30 6.0
sp|Q9BG76|EDN1_SHEEP Endothelin-1 precursor (ET-1) (Preproe... 30 6.0
sp|Q8CHI8|EP400_MOUSE E1A binding protein p400 (p400 kDa SW... 30 6.0
>sp|Q96L91|EP400_HUMAN E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
homolog) (hDomino) (CAG repeat protein 32) (Trinucleotide
repeat-containing gene 12 protein)
Length = 3160
Score = 30.0 bits (66), Expect = 4.6
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 491 RAPAPLVTEQIDFFCGRHGCLGNETATVGMTPVAIT----VPNTVAV 363
RAP P+V + + HG LG++ G +P +T VP VAV
Sbjct: 1670 RAPGPVVMQTVSQAGAVHGALGSKPPAGGPSPAPLTPQVGVPGRVAV 1716
>sp|O05714|DNAK_ANAVA Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 688
Score = 29.6 bits (65), Expect = 6.0
Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Frame = -3
Query: 423 RDRDSWH--DSGRDYGSKYGRGS 361
R+RDS++ D GRDYG YGR S
Sbjct: 637 RERDSYNNRDYGRDYGRDYGRDS 659
>sp|Q9BG76|EDN1_SHEEP Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)
Length = 202
Score = 29.6 bits (65), Expect = 6.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 367 ATVFGTVIATGVMPTVAVSFPRQPWRPQKKSICS 468
A V GT ++TG P PWRP++ CS
Sbjct: 21 AAVLGTELSTGAESGGERPVPTTPWRPRRSKRCS 54
>sp|Q8CHI8|EP400_MOUSE E1A binding protein p400 (p400 kDa SWI2/SNF2-related protein) (Domino
homolog) (mDomino)
Length = 3072
Score = 29.6 bits (65), Expect = 6.0
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Frame = -1
Query: 491 RAPAPLVTEQIDFFCGRHGCLGNETATVGMTPVAIT----VPNTVAV 363
RAP P+V + + H LG++ T G +P +T VP VAV
Sbjct: 1588 RAPGPVVMQTVSQAGAVHSTLGSKPPTSGPSPAPLTPQVGVPGRVAV 1634
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,495,317
Number of Sequences: 369166
Number of extensions: 1203851
Number of successful extensions: 2615
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2611
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)