Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D16
(407 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9U3Z7|NHPX_DROME NHP2-like protein (Hoi-polloi protein) 141 4e-34
sp|Q21568|NHPX_CAEEL NHP2/L7aE family protein YEL026W homolog 140 8e-34
sp|P55769|NHPX_HUMAN NHP2-like protein 1 (High mobility gro... 139 2e-33
sp|P39990|NHPX_YEAST NHP2/L7aE family protein YEL026W 131 5e-31
sp|Q971C9|RL7A_SULTO 50S ribosomal protein L7Ae 91 9e-19
sp|P62427|RL7A_NANEQ 50S ribosomal protein L7Ae 87 1e-17
sp|Q8ZTA5|RL7A_PYRAE 50S ribosomal protein L7Ae 86 4e-17
sp|P55858|RL7A_SULSO 50S ribosomal protein L7Ae 84 1e-16
sp|Q4J8P1|RL7A_SULAC 50S ribosomal protein L7Ae 84 1e-16
sp|Q8U160|RL7A_PYRFU 50S ribosomal protein L7Ae 83 2e-16
>sp|Q9U3Z7|NHPX_DROME NHP2-like protein (Hoi-polloi protein)
Length = 127
Score = 141 bits (356), Expect = 4e-34
Identities = 66/126 (52%), Positives = 92/126 (73%)
Frame = +2
Query: 2 TDSINPKAYPLAKNELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADP 181
T+ +NPKA+PLA +LT KI+N++Q+A + +Q++KGANEATK LNRG A ++V+A DA+P
Sbjct: 2 TEEVNPKAFPLADAQLTAKIMNLLQQALNYNQLRKGANEATKTLNRGLADIVVLAGDAEP 61
Query: 182 XXXXXXXXXXCEDKNVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTA 361
CEDKNVPYVF+ SK ALGRACGVSR ++AC+V + GS++ + I
Sbjct: 62 IEILLHLPLLCEDKNVPYVFVRSKQALGRACGVSRPIVACSVTTNEGSQLKSQITSIQQE 121
Query: 362 IEKLIV 379
IE+L+V
Sbjct: 122 IERLLV 127
>sp|Q21568|NHPX_CAEEL NHP2/L7aE family protein YEL026W homolog
Length = 128
Score = 140 bits (354), Expect = 8e-34
Identities = 66/125 (52%), Positives = 93/125 (74%)
Frame = +2
Query: 5 DSINPKAYPLAKNELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPX 184
D +NPKA+PLA L+ K+++++Q+A + Q+KKGANEATK LNRG +++IVMAADA+P
Sbjct: 4 DGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPL 63
Query: 185 XXXXXXXXXCEDKNVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAI 364
CEDKNVPYVF+ SKAALGRACGV+R VIA ++ ++ GS++ +Q I +
Sbjct: 64 EILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDV 123
Query: 365 EKLIV 379
EKL++
Sbjct: 124 EKLLI 128
>sp|P55769|NHPX_HUMAN NHP2-like protein 1 (High mobility group-like nuclear protein 2
homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein)
(OTK27)
sp|P55770|NHPX_RAT NHP2-like protein 1 (High mobility group-like nuclear protein 2
homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein)
(OTK27)
sp|Q9D0T1|NHPX_MOUSE NHP2-like protein 1 (High mobility group-like nuclear protein 2
homolog 1) ([U4/U6.U5] tri-snRNP 15.5 kDa protein)
(Sperm-specific antigen 1) (Fertilization antigen 1)
(FA-1)
Length = 128
Score = 139 bits (351), Expect = 2e-33
Identities = 68/123 (55%), Positives = 90/123 (73%)
Frame = +2
Query: 11 INPKAYPLAKNELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXX 190
+NPKAYPLA LT K+++++Q++ + Q++KGANEATK LNRG ++ IVMAADA+P
Sbjct: 6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEI 65
Query: 191 XXXXXXXCEDKNVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAIEK 370
CEDKNVPYVF+ SK ALGRACGVSR VIAC+V GS++ +Q I +IE+
Sbjct: 66 ILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIER 125
Query: 371 LIV 379
L+V
Sbjct: 126 LLV 128
>sp|P39990|NHPX_YEAST NHP2/L7aE family protein YEL026W
Length = 126
Score = 131 bits (330), Expect = 5e-31
Identities = 63/122 (51%), Positives = 85/122 (69%)
Frame = +2
Query: 14 NPKAYPLAKNELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXX 193
NPKA+PLA LT +I++V+Q+A +L Q+KKGANEATK LNRG ++ I+MAAD +P
Sbjct: 5 NPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEIL 64
Query: 194 XXXXXXCEDKNVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAIEKL 373
CEDKNVPYVF+PS+ ALGRACGVSR VIA ++ + S + + + IE L
Sbjct: 65 LHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETL 124
Query: 374 IV 379
++
Sbjct: 125 LI 126
>sp|Q971C9|RL7A_SULTO 50S ribosomal protein L7Ae
Length = 126
Score = 90.9 bits (224), Expect = 9e-19
Identities = 43/110 (39%), Positives = 68/110 (61%)
Frame = +2
Query: 44 ELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCEDK 223
+L K+++ ++KA+ +IKKG NE TKA+ RG+A+L+V+A D P CE+K
Sbjct: 14 DLANKVLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEK 73
Query: 224 NVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAIEKL 373
+PYV++PSK ALG ACG+ + + A+I+ E L+ I +E+L
Sbjct: 74 KIPYVYVPSKKALGEACGLQVAAASAAIIDP--GEAKDLLDEIVKRVEEL 121
>sp|P62427|RL7A_NANEQ 50S ribosomal protein L7Ae
Length = 125
Score = 87.0 bits (214), Expect = 1e-17
Identities = 40/110 (36%), Positives = 71/110 (64%)
Frame = +2
Query: 44 ELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCEDK 223
EL K+ +++KA+ +I+KG NE TKA+ RG+A+L+++A + +P CE+K
Sbjct: 15 ELANKVYELVRKARETGKIRKGTNETTKAVERGQAKLVIIAENVNPPEIVMHLPALCEEK 74
Query: 224 NVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAIEKL 373
VPYV++PSK LG+A G++ S + A+I++ E L++ I ++++L
Sbjct: 75 GVPYVYVPSKEELGKAAGINVSAASAAIIDA--GEAKDLLEEIIRSVQEL 122
>sp|Q8ZTA5|RL7A_PYRAE 50S ribosomal protein L7Ae
Length = 151
Score = 85.5 bits (210), Expect = 4e-17
Identities = 43/107 (40%), Positives = 63/107 (58%), Gaps = 2/107 (1%)
Frame = +2
Query: 41 NELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCED 220
N++ K + ++ A+ +IKKG NE TKA+ RG A+L+++A D DP CE+
Sbjct: 28 NDVAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEE 87
Query: 221 KNVPYVFIPSKAALGRACGVSRSVIACAVIE--STGSEVTPLVQGIH 355
K VPYV++PSK LG+A G++ S A VIE E+ LV I+
Sbjct: 88 KKVPYVYVPSKEKLGKAAGINVSAAAAVVIEPGQAAGELEALVSKIN 134
>sp|P55858|RL7A_SULSO 50S ribosomal protein L7Ae
Length = 127
Score = 84.0 bits (206), Expect = 1e-16
Identities = 35/90 (38%), Positives = 58/90 (64%)
Frame = +2
Query: 44 ELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCEDK 223
+L K++ ++KA+ +IKKG NE TKA+ RG+A+L+++A D P C++K
Sbjct: 14 DLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEK 73
Query: 224 NVPYVFIPSKAALGRACGVSRSVIACAVIE 313
+PYV++ SK ALG ACG+ + + A++E
Sbjct: 74 KIPYVYVSSKKALGEACGLQVATASAAILE 103
>sp|Q4J8P1|RL7A_SULAC 50S ribosomal protein L7Ae
Length = 126
Score = 83.6 bits (205), Expect = 1e-16
Identities = 36/90 (40%), Positives = 58/90 (64%)
Frame = +2
Query: 44 ELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCEDK 223
EL K++ ++KA+ +IKKG NE TKA+ R +A+L+V+A D P CE+K
Sbjct: 14 ELADKVLEAVKKAKDSGKIKKGTNETTKAVERSQAKLVVIAEDVQPEEIVAHLPLLCEEK 73
Query: 224 NVPYVFIPSKAALGRACGVSRSVIACAVIE 313
+PYV++PSK +LG ACG+ + + A+++
Sbjct: 74 KIPYVYVPSKKSLGEACGLQVAAASVALMD 103
>sp|Q8U160|RL7A_PYRFU 50S ribosomal protein L7Ae
Length = 123
Score = 82.8 bits (203), Expect = 2e-16
Identities = 39/111 (35%), Positives = 66/111 (59%)
Frame = +2
Query: 44 ELTTKIINVIQKAQSLSQIKKGANEATKALNRGRAQLIVMAADADPXXXXXXXXXXCEDK 223
EL K + ++ A+ +I+KG NE TKA+ RG+A+L+++A D DP CE+K
Sbjct: 14 ELAEKALQAVEIARDTGKIRKGTNETTKAVERGQAKLVIIAEDVDPEEIVAHLPPLCEEK 73
Query: 224 NVPYVFIPSKAALGRACGVSRSVIACAVIESTGSEVTPLVQGIHTAIEKLI 376
+PY+++PSK LG A G+ + + A+IE + LV+ I +++L+
Sbjct: 74 EIPYIYVPSKKELGAAAGIEVAAASVAIIEP--GKARDLVEEIAMKVKELM 122
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,681,292
Number of Sequences: 369166
Number of extensions: 616964
Number of successful extensions: 1457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1859285150
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)