Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D12
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial pr... 110 1e-24
sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial pr... 109 2e-24
sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial pr... 105 3e-23
sp|P40174|EFTU1_STRCO Elongation factor Tu-1 (EF-Tu-1) 87 9e-18
sp|Q53871|EFTU1_STRCU Elongation factor Tu-1 (EF-Tu-1) 87 9e-18
sp|P29542|EFTU1_STRRA Elongation factor Tu-1 (EF-Tu-1) 86 3e-17
sp|Q889X3|EFTU_PSESM Elongation factor Tu (EF-Tu) 84 8e-17
sp|P56003|EFTU_HELPY Elongation factor Tu (EF-Tu) 84 1e-16
sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial pr... 84 1e-16
sp|P42471|EFTU_BRELN Elongation factor Tu (EF-Tu) 84 1e-16
>sp|Q8BFR5|EFTU_MOUSE Elongation factor Tu, mitochondrial precursor
Length = 452
Score = 110 bits (274), Expect = 1e-24
Identities = 55/106 (51%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E+LRRG+V++ P S+Q + VEAQ+Y+L++ EGGR KP +F ++S +WD IL
Sbjct: 332 EDLRRGLVMVKPGSIQPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRVIL 391
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 316
P GKEL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 392 PPGKELAMPGEDLKLSLILRQPMILEKGQRFTLRDGNKTIGTGLVT 437
>sp|P49410|EFTU_BOVIN Elongation factor Tu, mitochondrial precursor (EF-Tu)
Length = 452
Score = 109 bits (272), Expect = 2e-24
Identities = 56/106 (52%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E+LRRG+V+ P S+Q + VEAQ+Y+LT+ EGGR KP +F ++S +WD IL
Sbjct: 332 EDLRRGLVMAKPGSIQPHQKVEAQVYILTKEEGGRHKPFVSHFMPVMFSLTWDMACRIIL 391
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVT 316
P GKEL MPGED + L L++ M+LE GQRFTLR G T+G G+VT
Sbjct: 392 PPGKELAMPGEDLKLTLILRQPMILEKGQRFTLRDGNRTIGTGLVT 437
>sp|P49411|EFTU_HUMAN Elongation factor Tu, mitochondrial precursor (EF-Tu) (P43)
Length = 452
Score = 105 bits (262), Expect = 3e-23
Identities = 54/109 (49%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E+LRRG+V++ P S++ + VEAQ+Y+L++ EGGR KP +F ++S +WD IL
Sbjct: 332 EDLRRGLVMVKPGSIKPHQKVEAQVYILSKEEGGRHKPFVSHFMPVMFSLTWDMACRIIL 391
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLRCG-ITLGYGVVTKLL 325
P KEL MPGED L L++ M+LE GQRFTLR G T+G G+VT L
Sbjct: 392 PPEKELAMPGEDLKFNLILRQPMILEKGQRFTLRDGNRTIGTGLVTNTL 440
>sp|P40174|EFTU1_STRCO Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 87.4 bits (215), Expect = 9e-18
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E++ RG VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D L
Sbjct: 288 EDVERGQVIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTL 347
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 322
PEG E++MPG+++ +K+ L + + +E G +F +R G T+G G VTK+
Sbjct: 348 PEGTEMVMPGDNTEMKVELIQPVAMEEGLKFAIREGGRTVGAGQVTKI 395
>sp|Q53871|EFTU1_STRCU Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 87.4 bits (215), Expect = 9e-18
Identities = 44/108 (40%), Positives = 68/108 (62%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E++ RG VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D L
Sbjct: 288 EDVERGQVIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVTL 347
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 322
PEG E++MPG+++ +K+ L + + +E G +F +R G T+G G VTK+
Sbjct: 348 PEGTEMVMPGDNTEMKVELIQPVAMEEGLKFAIREGGRTVGAGQVTKI 395
>sp|P29542|EFTU1_STRRA Elongation factor Tu-1 (EF-Tu-1)
Length = 397
Score = 85.9 bits (211), Expect = 3e-17
Identities = 43/109 (39%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E++ RG VII P SV + EAQ Y+L++ EGGR P N++ Q Y ++ D L
Sbjct: 288 EDVERGQVIIKPGSVTPHTEFEAQAYILSKDEGGRHTPFFNNYRPQFYFRTTDVTGVVHL 347
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 325
PEG E++MPG+++ +++ L + + +E G +F +R G T+G G VTK++
Sbjct: 348 PEGTEMVMPGDNTEMRVELIQPVAMEEGLKFAIREGGRTVGAGQVTKIV 396
>sp|Q889X3|EFTU_PSESM Elongation factor Tu (EF-Tu)
Length = 397
Score = 84.3 bits (207), Expect = 8e-17
Identities = 42/109 (38%), Positives = 69/109 (63%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
+++ RG V++ P +V+ + EA+IY+L++ EGGR P K ++ Q Y ++ D L
Sbjct: 288 DDVERGQVLVKPGTVKPHTQFEAEIYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGSCEL 347
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 325
PEG E++MPG++ V + L K + +E G RF +R G T+G GVV K++
Sbjct: 348 PEGVEMVMPGDNVKVSVTLIKPIAMEDGLRFAIREGGRTVGAGVVAKII 396
>sp|P56003|EFTU_HELPY Elongation factor Tu (EF-Tu)
Length = 399
Score = 84.0 bits (206), Expect = 1e-16
Identities = 41/109 (37%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
EE+ RGMV+ P S+ + E +IY+L++ EGGR P N++ Q Y ++ D L
Sbjct: 290 EEVERGMVLCKPGSITPHKKFEGEIYVLSKEEGGRHTPFFTNYRPQFYVRTTDVTGSITL 349
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 325
PEG E++MPG++ + + L + LE+G +F +R G T+G GVV+ ++
Sbjct: 350 PEGVEMVMPGDNVKITVELISPVALELGTKFAIREGGRTVGAGVVSNII 398
>sp|Q9ZT91|EFTM_ARATH Elongation factor Tu, mitochondrial precursor
Length = 454
Score = 83.6 bits (205), Expect = 1e-16
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 1/109 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E+++RGMVI P S + Y EA+IY+LT+ EGGR N++ Q Y ++ D L
Sbjct: 345 EDIQRGMVIAKPGSCKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVEL 404
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKLL 325
PE +++MPG++ + L + LE GQRF LR G T+G GVV+K++
Sbjct: 405 PENVKMVMPGDNVTAVFELIMPVPLETGQRFALREGGRTVGAGVVSKVM 453
>sp|P42471|EFTU_BRELN Elongation factor Tu (EF-Tu)
Length = 397
Score = 83.6 bits (205), Expect = 1e-16
Identities = 41/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Frame = +2
Query: 2 EELRRGMVIISPKSVQMYNYVEAQIYLLTEAEGGRKKPSTKNFQSQIYSKSWDCPAFTIL 181
E++ RG VI+ P S+ + EAQ+Y+L++ EGGR P N++ Q Y ++ D L
Sbjct: 288 EDVERGQVIVKPGSITPHTKFEAQVYILSKDEGGRHNPFYSNYRPQFYFRTTDVTGVITL 347
Query: 182 PEGKELIMPGEDSSVKLHLQKKMVLEVGQRFTLR-CGITLGYGVVTKL 322
PEG E++MPG+++ + + L + + +E RF +R G T+G G VTK+
Sbjct: 348 PEGTEMVMPGDNTDMSVELIQPIAMEDRLRFAIREGGRTVGAGRVTKI 395
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,442,167
Number of Sequences: 369166
Number of extensions: 1089728
Number of successful extensions: 3135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3121
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)