Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D08
(722 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95995|GAS8_HUMAN Growth-arrest-specific protein 8 (Grow... 283 3e-76
sp|Q60779|GAS8_MOUSE Growth-arrest-specific protein 8 (Grow... 272 6e-73
sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog 147 4e-35
sp|O15697|GAS8_TRYBR Trypanin (T lymphocyte-triggering fact... 98 2e-20
sp|Q91ZU8|BPAEA_MOUSE Bullous pemphigoid antigen 1, isoform... 57 4e-08
sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor... 50 6e-06
sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscl... 50 8e-06
sp|Q9NQX4|MYO5C_HUMAN Myosin-5C (Myosin Vc) 49 1e-05
sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscl... 49 2e-05
sp|Q62812|MYH9_RAT Myosin-9 (Myosin heavy chain, nonmuscle ... 49 2e-05
>sp|O95995|GAS8_HUMAN Growth-arrest-specific protein 8 (Growth arrest-specific 11)
Length = 478
Score = 283 bits (724), Expect = 3e-76
Identities = 139/201 (69%), Positives = 169/201 (84%)
Frame = +2
Query: 2 KRLVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFS 181
KRL +PL+KA+EE SE+++QL NYE+DK L TKARLK++EKE +DL+WEHEVLEQRF+
Sbjct: 277 KRLADPLQKAREEMSEMQKQLANYERDKQILLCTKARLKVREKELKDLQWEHEVLEQRFT 336
Query: 182 KVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDP 361
KV++ERD+LY KF AI EVQQK+G KN++LERKL L+ ++EKKE Q NEVL+ASNLDP
Sbjct: 337 KVQQERDELYRKFTAAIQEVQQKTGFKNLVLERKLQALSAAVEKKEVQFNEVLAASNLDP 396
Query: 362 NALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPSEELGFKP 541
AL +V+RKLEDVL+SKNS IKDLQYELA+VCKAHND LRTYEAKL FGIP + +GFKP
Sbjct: 397 AALTLVSRKLEDVLESKNSTIKDLQYELAQVCKAHNDLLRTYEAKLLAFGIPLDNVGFKP 456
Query: 542 LESTVGNQSLGYGPAGLVSAP 604
LE+ V Q+LG GPAGLV P
Sbjct: 457 LETAVIGQTLGQGPAGLVGTP 477
>sp|Q60779|GAS8_MOUSE Growth-arrest-specific protein 8 (Growth arrest-specific 11)
Length = 478
Score = 272 bits (696), Expect = 6e-73
Identities = 133/201 (66%), Positives = 167/201 (83%)
Frame = +2
Query: 2 KRLVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFS 181
+RL +PL+KA++E +E++++L N+E+DK L TKARLK+ E+E +DL+WEHEVLEQRF
Sbjct: 277 RRLADPLQKAKDEMNEMQKRLGNHERDKQILVCTKARLKVAERELKDLKWEHEVLEQRFI 336
Query: 182 KVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDP 361
KV++ER++LY KF AI EVQQK+G KN+LLERKL L ++EK+E Q NEVL+ASNLDP
Sbjct: 337 KVQQEREELYRKFADAIQEVQQKTGFKNLLLERKLQALNAAVEKREVQFNEVLAASNLDP 396
Query: 362 NALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPSEELGFKP 541
AL +V+RKLEDVL+SKN+ IKDLQYELARVCKAHND LRTYEAKL FGIP + +GFKP
Sbjct: 397 TALTLVSRKLEDVLESKNTTIKDLQYELARVCKAHNDLLRTYEAKLLAFGIPLDNVGFKP 456
Query: 542 LESTVGNQSLGYGPAGLVSAP 604
LE+ V Q+LG GPAGLV AP
Sbjct: 457 LETAVIGQTLGQGPAGLVGAP 477
>sp|Q8MT08|GAS8_DROME Growth-arrest-specific protein 8 homolog
Length = 479
Score = 147 bits (370), Expect = 4e-35
Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 2/201 (0%)
Frame = +2
Query: 2 KRLVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFS 181
+RL EPL A + +E +R+L YE+DK L K R EK+ + L WE E L R
Sbjct: 277 RRLKEPLEHANIQLNEYRRKLEFYERDKQQLSRLKTRNTRLEKKVKGLTWEAETLILRND 336
Query: 182 KVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLS--ASNL 355
+ ER+ L +F I E+QQK+GLKNVLLERK+ L EK+ L+E ++ A N
Sbjct: 337 SLVAEREGLKERFNDVIVELQQKTGLKNVLLERKIAALMREDEKRSIVLHETIATCAPNF 396
Query: 356 DPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPSEELGF 535
L + ++ +++D KN I DL+YE+ + KAH+D L TYE KL Q+G+P++ELGF
Sbjct: 397 -AEKLTSLDERVGNIIDEKNKIILDLRYEVTKARKAHDDLLETYECKLKQYGVPTDELGF 455
Query: 536 KPLESTVGNQSLGYGPAGLVS 598
KP+ + Q GPAG+++
Sbjct: 456 KPIRNRDQQQLYVCGPAGIIT 476
>sp|O15697|GAS8_TRYBR Trypanin (T lymphocyte-triggering factor) (TLTF)
Length = 453
Score = 98.2 bits (243), Expect = 2e-20
Identities = 56/173 (32%), Positives = 97/173 (56%)
Frame = +2
Query: 2 KRLVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFS 181
+ LV PL +AQ E +EL+++ E++K L+ T+ +L+ +E R EH+ LE+R++
Sbjct: 274 QNLVAPLEEAQREVAELQQKRKQNEQNKRGLEVTRVKLRSLREEIRRQREEHQALEERYA 333
Query: 182 KVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDP 361
V ER++L KF A+ + +N +L++KL +E+++ QL VL A NL+P
Sbjct: 334 CVHREREELKGKFESALRQAVMVVEERNEVLQQKLIESHALVEERDVQLEGVLRAMNLEP 393
Query: 362 NALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPS 520
L ++ ++++ L KN IKDL +EL + K ++ L E + I S
Sbjct: 394 KTLELIATEVDEWLQRKNQLIKDLHFELKKGEKLYSATLLEMERRCQTANIAS 446
>sp|Q91ZU8|BPAEA_MOUSE Bullous pemphigoid antigen 1, isoform 5 (BPA) (Hemidesmosomal plaque
protein) (Dystonia musculorum protein) (Dystonin)
Length = 2611
Score = 57.4 bits (137), Expect = 4e-08
Identities = 51/182 (28%), Positives = 93/182 (51%), Gaps = 6/182 (3%)
Frame = +2
Query: 2 KRLVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFS 181
+ LVE L++ ++ EL R + E+D LA + A ++KEK+ +LE ++ E +FS
Sbjct: 1242 RALVEELQRKRDHEEELLRLVKQMERD-LAFQKQVAEKQLKEKQKVELEARRKITEIQFS 1300
Query: 182 KVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEV---LSASN 352
E + V +++ K L+++++ LT + K E ++ E+ LSA
Sbjct: 1301 CRE-------SAAVAQARPQREQGRQKEEELKQQVDELTLANRKAEKEMRELKYELSAVQ 1353
Query: 353 LDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKA---HNDQLRTYEAKLSQFGIPSE 523
L+ + R L+D LD N+ +K L+ +L R +A ++ QLR +L+Q +E
Sbjct: 1354 LEKASSEEKARLLKDKLDETNNTLKCLKEDLERKDQAQERYSQQLRDLGGQLNQTTDKAE 1413
Query: 524 EL 529
E+
Sbjct: 1414 EV 1415
Score = 38.5 bits (88), Expect = 0.018
Identities = 39/163 (23%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Frame = +2
Query: 23 RKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKE--------YRDLEWEHEVLEQRF 178
RKA++E ELK +L+ + +K + + LK K E DLE + + E+
Sbjct: 1336 RKAEKEMRELKYELSAVQLEKASSEEKARLLKDKLDETNNTLKCLKEDLERKDQAQERYS 1395
Query: 179 SKVEEERDQLYNKFVKAIHEVQQKSGLKNV--LLERKLNTLTESLEKKEAQLNEVLSASN 352
++ + QL KA Q+ + LK + + +L +L + K + +++ V A
Sbjct: 1396 QQLRDLGGQLNQTTDKAEEVRQEANDLKKIKHTYQLELESLHQEKGKLQREVDRVTRAHA 1455
Query: 353 LDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLR 481
L + + ++ D KDL E R+C+ +D L+
Sbjct: 1456 LAERNIQCLNSQVHASRDE-----KDLSEERRRLCQRKSDHLK 1493
Score = 36.2 bits (82), Expect = 0.091
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Frame = +2
Query: 8 LVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARL-----KIKEKEYRDLEWEHEVLEQ 172
L++ R ENS+L +++ E LK K+R+ K+KE +L + +E
Sbjct: 1093 LLQRQRATMVENSKLTGKISELETMVAELKKQKSRVEEELPKVKEAAENELRKQQRNVED 1152
Query: 173 ---RFSKVEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLS 343
+ + E E Q Y + ++ I V++K + L ++ LT E + A + E L
Sbjct: 1153 IALQKLRAESEAKQ-YRRELETI--VREKEAAEREL--ERVRQLTAEAEARRAAVEENLR 1207
Query: 344 ASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYE 442
+ LED L K+S++ DL+ +
Sbjct: 1208 NFRSQLQENTFTRQTLEDHLRRKDSSLSDLEQQ 1240
Score = 34.3 bits (77), Expect = 0.35
Identities = 31/149 (20%), Positives = 67/149 (44%)
Frame = +2
Query: 26 KAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFSKVEEERDQ 205
+ ++E ++LK+ Y+ + +L K +L ++E + H + E+ Q
Sbjct: 1414 EVRQEANDLKKIKHTYQLELESLHQEKGKL---QREVDRVTRAHALAERNI--------Q 1462
Query: 206 LYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNALAIVTR 385
N V A + + S + L +RK + L E E+ AQL + + A + + + +
Sbjct: 1463 CLNSQVHASRDEKDLSEERRRLCQRKSDHLKEEFERSHAQLLQNIQAEKENNDKI----Q 1518
Query: 386 KLEDVLDSKNSAIKDLQYELARVCKAHND 472
KL L+ N + L+ ++ + + +N+
Sbjct: 1519 KLNKELEKSNECAETLKQKVDELTRQNNE 1547
>sp|Q9JIR0|RIMB1_RAT Peripheral-type benzodiazepine receptor-associated protein 1
(PRAX-1) (RIM binding protein 1) (RIM-BP1)
Length = 1847
Score = 50.1 bits (118), Expect = 6e-06
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 9/201 (4%)
Frame = +2
Query: 8 LVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRFSKV 187
L + RK Q EL+ QL + + L +RL K E +EWE+ L+ + V
Sbjct: 351 LEQEARKKQRRCEELELQLRAAQNENARLVEENSRLSGKATEKEQVEWENAELKGQLLGV 410
Query: 188 EEERDQLYNK---------FVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVL 340
+ERD K ++ + E +K + LE + SL++K+ ++ +
Sbjct: 411 TQERDSALRKSQGLQSKLESLEQVLEHMRKVAQRRQQLEEEHEQARLSLQEKQEEVRRLQ 470
Query: 341 SASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPS 520
A + LE LDS + +++L+ + C++ ++ +L F +
Sbjct: 471 QAQAEAKREHEGAVQLLESTLDSMQARVRELEGQ----CRSQTERFSLLAQELQAFRLHP 526
Query: 521 EELGFKPLESTVGNQSLGYGP 583
L L S +G +LG P
Sbjct: 527 GPLDL--LTSALGCNALGDHP 545
>sp|Q8VDD5|MYH9_MOUSE Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1960
Score = 49.7 bits (117), Expect = 8e-06
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
Frame = +2
Query: 8 LVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYR-DLEWEHEVLEQRFSK 184
L E LR+ +++ EL++ E D L + A L+ + E + L + E L+ ++
Sbjct: 1032 LEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALAR 1091
Query: 185 VEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPN 364
VEEE Q N +K I E LE +++ L E LE + A N+
Sbjct: 1092 VEEEAAQK-NMALKKIRE-----------LETQISELQEDLESERASRNKAEKQKRDLGE 1139
Query: 365 ALAIVTRKLEDVLDSKNSAIKDL----QYELARVCKAHNDQLRTYEAKLSQ 505
L + +LED LDS +A ++L + E++ + K D+ +T+EA++ +
Sbjct: 1140 ELEALKTELEDTLDS-TAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQE 1189
Score = 38.1 bits (87), Expect = 0.024
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Frame = +2
Query: 11 VEPLRKAQEENSELKRQLTNYEKDKLAL----KNTKARLKIKEKEYRDLEWEHEVLEQRF 178
++ LRK Q + + R+L + + + K + +LK E E L+ E E+
Sbjct: 1637 IKQLRKLQAQMKDCMRELDDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERAK 1696
Query: 179 SKVEEERDQLYNKFV----KAIHEVQQKSGL--KNVLLERKL-----NT--LTESLEKKE 319
+ ++ERD+L ++ K +++K L + LLE +L NT + + L+K
Sbjct: 1697 RQAQQERDELADEIANSSGKGALALEEKRRLEARIALLEEELEEEQGNTELINDRLKKAN 1756
Query: 320 AQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKA-HNDQLRTYEAK 496
Q++++ + NL+ + A L+ +N +K E+ K+ + + EAK
Sbjct: 1757 LQIDQINTDLNLE-RSHAQKNENARQQLERQNKELKAKLQEMESAVKSKYKASIAALEAK 1815
Query: 497 LSQ 505
++Q
Sbjct: 1816 IAQ 1818
>sp|Q9NQX4|MYO5C_HUMAN Myosin-5C (Myosin Vc)
Length = 1742
Score = 48.9 bits (115), Expect = 1e-05
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Frame = +2
Query: 23 RKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYRDLEWE-HEVLEQRFSKVEEER 199
R+ + N ++ ++T + + + + K ++ EK+ +DLE +E E+ K+EE
Sbjct: 1188 REENDINESIRHEVTRLTSENMMIPDFKQQISELEKQKQDLEIRLNEQAEKMKGKLEELS 1247
Query: 200 DQLY---------NKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASN 352
+QL+ K ++A +E+ K K + +++ ++ L+K+ +EV
Sbjct: 1248 NQLHRSQEEEGTQRKALEAQNEIHTKEKEKLIDKIQEMQEASDHLKKQFETESEVKCNFR 1307
Query: 353 LDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCK 460
+ + L + R LE+ LD K+ IK LQ ++ + K
Sbjct: 1308 QEASRLTLENRDLEEELDMKDRVIKKLQDQVKTLSK 1343
>sp|P14105|MYH9_CHICK Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1959
Score = 48.5 bits (114), Expect = 2e-05
Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 5/171 (2%)
Frame = +2
Query: 8 LVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYR-DLEWEHEVLEQRFSK 184
L E LR+ +++ EL++ E D L + A L+ + E + L + E L+ ++
Sbjct: 1032 LEERLRREEKQRQELEKTRRKLEGDSSDLHDQIAELQAQIAELKIQLSKKEEELQAALAR 1091
Query: 185 VEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPN 364
VEEE Q N +K I E LE ++ L E LE + A N+
Sbjct: 1092 VEEEAAQK-NMALKKIRE-----------LESQITELQEDLESERASRNKAEKQKRDLGE 1139
Query: 365 ALAIVTRKLEDVLDSKNSAIKDL----QYELARVCKAHNDQLRTYEAKLSQ 505
L + +LED LDS +A ++L + E+ + K D+ +T+EA++ +
Sbjct: 1140 ELEALKTELEDTLDS-TAAQQELRSKREQEVTVLKKTLEDEAKTHEAQIQE 1189
Score = 36.6 bits (83), Expect = 0.070
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 25/190 (13%)
Frame = +2
Query: 11 VEPLRKAQEENSELKRQL----TNYEKDKLALKNTKARLKIKEKEYRDLEWEHEVLEQRF 178
++ +RK Q + + R+L T+ E+ K + +LK E E L+ E E+
Sbjct: 1637 IKHVRKLQAQMKDYMRELEDTRTSREEILAQAKENEKKLKSMEAEMIQLQEELAAAERAK 1696
Query: 179 SKVEEERDQLYNKFVKAIHEVQQKSGLKNVL-------LERKLNTLTESLEKKEAQ---L 328
+ ++ERD+L + E+ SG K L LE ++ L E LE+++ +
Sbjct: 1697 RQAQQERDELAD-------EIANSSG-KGALAMEEKRRLEARIAQLEEELEEEQGNTEII 1748
Query: 329 NEVLSASNL-------DPNALAIVTRKLEDVLDSKNSAIKDLQYEL----ARVCKAHNDQ 475
N+ L +NL D NA +K E+ K+L+ +L + V +
Sbjct: 1749 NDRLKKANLQIDQMNADLNAERSNAQKNENARQQMERQNKELKLKLQEMESAVKSKYKAT 1808
Query: 476 LRTYEAKLSQ 505
+ EAK+ Q
Sbjct: 1809 ITALEAKIVQ 1818
Score = 30.0 bits (66), Expect = 6.5
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 10/174 (5%)
Frame = +2
Query: 38 ENSELKRQLTNYEKDKLALKNTKARLKIKEKEYR----DLEWEHEVLEQRFSKVEEERDQ 205
E +L+ QL + + +ARL K++E DLE E E+R ++ E+ +
Sbjct: 881 EKMQLQEQLQAEAELCAEAEEIRARLTAKKQELEEICHDLEARVEEEEERCQHLQAEKKK 940
Query: 206 LYNKFVKAIHEVQ------QKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPNA 367
+ + +++ QK L+ V E KL L E + E Q ++ L +
Sbjct: 941 MQQNIQELEEQLEEEESARQKLQLEKVTTEAKLKKLEEDVIVLEDQNLKLAKEKKLLEDR 1000
Query: 368 LAIVTRKLEDVLDSKNSAIKDLQYELARVCKAHNDQLRTYEAKLSQFGIPSEEL 529
++ T L + + S LA++ H + E +L + +EL
Sbjct: 1001 MSEFTTNLTEEEEKSKS--------LAKLKNKHEAMITDLEERLRREEKQRQEL 1046
>sp|Q62812|MYH9_RAT Myosin-9 (Myosin heavy chain, nonmuscle IIa) (Nonmuscle myosin heavy
chain IIa) (NMMHC II-a) (NMMHC-IIA) (Cellular myosin
heavy chain, type A) (Nonmuscle myosin heavy chain-A)
(NMMHC-A)
Length = 1961
Score = 48.5 bits (114), Expect = 2e-05
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)
Frame = +2
Query: 8 LVEPLRKAQEENSELKRQLTNYEKDKLALKNTKARLKIKEKEYR-DLEWEHEVLEQRFSK 184
L E LR+ +++ EL++ E D L + A L+ + E + L + E L+ ++
Sbjct: 1032 LEERLRREEKQRQELEKTRRKLEGDSTDLSDQIAELQAQIAELKMQLAKKEEELQAALAR 1091
Query: 185 VEEERDQLYNKFVKAIHEVQQKSGLKNVLLERKLNTLTESLEKKEAQLNEVLSASNLDPN 364
VEEE Q N +K I E LE +++ L E LE + A N+
Sbjct: 1092 VEEEAAQK-NMALKKIRE-----------LETQISELQEDLESERACRNKAEKQKRDLGE 1139
Query: 365 ALAIVTRKLEDVLDSKNSAIKDL----QYELARVCKAHNDQLRTYEAKLSQ 505
L + +LED LDS +A ++L + E++ + K D+ +T+EA++ +
Sbjct: 1140 ELEALKTELEDTLDS-TAAQQELRSKREQEVSILKKTLEDEAKTHEAQIQE 1189
Score = 36.6 bits (83), Expect = 0.070
Identities = 41/183 (22%), Positives = 84/183 (45%), Gaps = 18/183 (9%)
Frame = +2
Query: 11 VEPLRKAQEENSELKRQLTNYEKDKLAL----KNTKARLKIKEKEYRDLEWEHEVLEQRF 178
++ LRK Q + + R + + + + K + +LK E E L+ E E+
Sbjct: 1638 IKQLRKLQAQMKDCMRDVDDTRASREEILAQAKENEKKLKSMEAEMIQLQEELAAAERAK 1697
Query: 179 SKVEEERDQLYNKFV----KAIHEVQQKSGLKNV--LLERKL-----NT--LTESLEKKE 319
+ ++ERD+L ++ K +++K L+ + LLE +L NT + + L+K
Sbjct: 1698 RQAQQERDELADEIANSSGKGALALEEKRRLEALIALLEEELEEEQGNTELINDRLKKAN 1757
Query: 320 AQLNEVLSASNLDPNALAIVTRKLEDVLDSKNSAIKDLQYELARVCKA-HNDQLRTYEAK 496
Q++++ + NL+ + A L+ +N +K E+ K+ + + EAK
Sbjct: 1758 LQIDQINTDLNLE-RSHAQKNENARQQLERQNKELKAKLQEMESAVKSKYKASIAALEAK 1816
Query: 497 LSQ 505
++Q
Sbjct: 1817 IAQ 1819
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,867,627
Number of Sequences: 369166
Number of extensions: 1471395
Number of successful extensions: 6507
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6355
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)