Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_D01
(231 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28361|MSX1_CHICK Homeobox protein MSX-1 (CHOX-7) 34 0.12
sp|P50223|HMGX7_CHICK Homeobox protein GHOX-7 (CHOX-7) (Hox-7) 30 1.3
sp|P23410|MSX2_COTJA Homeobox protein MSX-2 (MSX-1) (QUOX-7) 30 1.8
sp|P28362|MSX2_CHICK Homeobox protein MSX-2 (CHOX-8) (GHox-8) 30 1.8
sp|P35993|HOX7P_XENLA Homeobox protein XHOX-7.1' 29 3.0
sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 29 3.9
sp|Q03358|MSX2_MOUSE Homeobox protein MSX-2 (Hox-8.1) 29 3.9
sp|Q9GK08|MSX2_CANFA Homeobox protein MSX-2 (Hox-8) 29 3.9
sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8) 28 6.7
sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein R... 28 8.7
>sp|P28361|MSX1_CHICK Homeobox protein MSX-1 (CHOX-7)
Length = 249
Score = 33.9 bits (76), Expect = 0.12
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSD--RIKMDLSSTDSSEF 189
+FSP P P T++ + NRKP T F T+ + L+L R K LS + +EF
Sbjct: 101 RFSPPPPRAEPPACTLRKHKTNRKPRTPF---TTAQLLALERKFRQKQYLSIAERAEF 155
>sp|P50223|HMGX7_CHICK Homeobox protein GHOX-7 (CHOX-7) (Hox-7)
Length = 288
Score = 30.4 bits (67), Expect = 1.3
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 22 KFSPKPSSIRSPGA-TMKSLRQNRKPSTKFSQPTSVRYLSLSD--RIKMDLSSTDSSEF 189
+FSP P SP A T++ + NRKP T F T+ + L+L R K LS + +EF
Sbjct: 139 RFSPPPPRRLSPPACTLRKHKTNRKPRTPF---TTAQLLALERKFRQKQYLSIAERAEF 194
>sp|P23410|MSX2_COTJA Homeobox protein MSX-2 (MSX-1) (QUOX-7)
Length = 259
Score = 30.0 bits (66), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
++SP P + T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 113 RYSPPPRHLSPTACTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 167
>sp|P28362|MSX2_CHICK Homeobox protein MSX-2 (CHOX-8) (GHox-8)
Length = 259
Score = 30.0 bits (66), Expect = 1.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
++SP P + T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 113 RYSPPPRHLSPTACTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 167
>sp|P35993|HOX7P_XENLA Homeobox protein XHOX-7.1'
Length = 291
Score = 29.3 bits (64), Expect = 3.0
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +1
Query: 25 FSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
+SP P + T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 140 YSPPPRHLSPSSCTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 193
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1
Length = 811
Score = 28.9 bits (63), Expect = 3.9
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 13 LNYKFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEFD 192
LN +P P+S+RS G+ K + + S++ +SV + + ++S T S
Sbjct: 649 LNKLLNPSPNSVRSNGSKTKKKEKRKSESSQHHSSSSVTTNKFNHIDQSEISRTTSRSDT 708
Query: 193 P 195
P
Sbjct: 709 P 709
>sp|Q03358|MSX2_MOUSE Homeobox protein MSX-2 (Hox-8.1)
Length = 267
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
++SP P + T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 121 RYSPPPRHMSPTTCTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 175
>sp|Q9GK08|MSX2_CANFA Homeobox protein MSX-2 (Hox-8)
Length = 267
Score = 28.9 bits (63), Expect = 3.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
++SP P + T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 121 RYSPPPRHMSPTTCTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 175
>sp|P35548|MSX2_HUMAN Homeobox protein MSX-2 (Hox-8)
Length = 267
Score = 28.1 bits (61), Expect = 6.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +1
Query: 22 KFSPKPSSIRSPGATMKSLRQNRKPSTKFSQPTSVRYLSLSDRIKMDLSSTDSSEF 189
++SP P T++ + NRKP T F+ + + L R K LS + +EF
Sbjct: 121 RYSPPPRHTSPTTCTLRKHKTNRKPRTPFT-TSQLLALERKFRQKQYLSIAERAEF 175
>sp|Q00816|HEX2_YEAST Protein HEX2 (Protein SRN1) (Protein REG1)
Length = 1014
Score = 27.7 bits (60), Expect = 8.7
Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 16/76 (21%)
Frame = +1
Query: 37 PSSIRSPGATMKSLRQNRK------------PSTKFSQPTSVRYLSLSDRIKMDLS---- 168
P + R P +T S R N PS K ++PT R++ +DR++ ++
Sbjct: 422 PDNNRFPSSTSSSNRDNENNSMGLSSILTSNPSEKSNKPTKNRHIHFNDRVEQCMALRYP 481
Query: 169 STDSSEFDPKEERASY 216
++ S + + +E Y
Sbjct: 482 ASQSEDDESDDENKQY 497
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.308 0.122 0.329
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,005,455
Number of Sequences: 369166
Number of extensions: 434823
Number of successful extensions: 974
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)