Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C20
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0 194 2e-49
sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(... 189 5e-48
sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E) 189 5e-48
sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0) 189 7e-48
sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E) 188 1e-47
sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E) 187 3e-47
sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E) 186 4e-47
sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E) 186 5e-47
sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E) 186 5e-47
sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E) 184 2e-46
>sp|Q93572|RLA0_CAEEL 60S acidic ribosomal protein P0
Length = 312
Score = 194 bits (492), Expect = 2e-49
Identities = 94/167 (56%), Positives = 128/167 (76%)
Frame = +2
Query: 17 APAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGDIVK 196
APAKA A+AP V +P Q T +GPEKTSFFQALQIPTKI RGTIEI+NDV LIK GD V
Sbjct: 109 APAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVG 168
Query: 197 QSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAVSLA 376
SE+ LL ML + PF YGL ++Q+Y++G+ Y+P+ LD+T +++ + F+ + VA+VSLA
Sbjct: 169 ASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLA 228
Query: 377 LNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+N PTLASV H +AN ++ ++G++ VTD + KEAE IK ++ DP+KF
Sbjct: 229 VNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF 275
>sp|P19889|RLA0_DROME 60S acidic ribosomal protein P0 (DNA-(apurinic or apyrimidinic
site) lyase) (Apurinic-apyrimidinic endonuclease)
Length = 317
Score = 189 bits (480), Expect = 5e-48
Identities = 92/170 (54%), Positives = 123/170 (72%)
Frame = +2
Query: 8 KIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGD 187
K++APA+ A+AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD
Sbjct: 106 KVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGD 165
Query: 188 IVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAV 367
V SEA LL ML I PF YGL + Q+Y++GS +SP+ LDI +D+ F + +AAV
Sbjct: 166 KVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAV 225
Query: 368 SLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
L++ PT+AS PH IAN K ++ ++ T+ KEA IKEY+KDP+KF
Sbjct: 226 CLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKF 275
>sp|Q90YX1|RLA0_ICTPU 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 189 bits (480), Expect = 5e-48
Identities = 96/172 (55%), Positives = 124/172 (72%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LI+
Sbjct: 104 ANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRP 163
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD V SEA LL ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F+E + +A
Sbjct: 164 GDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIA 223
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PTLAS+PH I N K V+ ++V TDY+ A+ +K +L DP++F
Sbjct: 224 SVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275
>sp|Q9U3U0|RLA0_CERCA 60S acidic ribosomal protein P0 (CcP0)
Length = 317
Score = 189 bits (479), Expect = 7e-48
Identities = 93/170 (54%), Positives = 123/170 (72%)
Frame = +2
Query: 8 KIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKAGD 187
K++APA+A A+AP+ V++P Q T LGPEKTSFFQAL IPTKI++GTIEIINDV ++K GD
Sbjct: 106 KVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGD 165
Query: 188 IVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVAAV 367
V SEA LL ML I PF YGL I Q+Y++GS +SP+ LDI +D+ F +AAV
Sbjct: 166 KVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAV 225
Query: 368 SLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
SL + PT+AS PH IAN K ++ ++ T+ K+A IKE++KDP+KF
Sbjct: 226 SLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKF 275
>sp|Q9DG68|RLA0_RANSY 60S acidic ribosomal protein P0 (L10E)
Length = 315
Score = 188 bits (477), Expect = 1e-47
Identities = 96/172 (55%), Positives = 122/172 (70%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 104 ANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKT 163
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD V SEA LL ML I PF +GL IQQ+Y+NGS YSP+ LDITED + F+E + +A
Sbjct: 164 GDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIA 223
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PT+ASVPH + N K V+ L+V TDY+ A+ +K +L DP+ F
Sbjct: 224 SVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF 275
>sp|Q9PV90|RLA0_BRARE 60S acidic ribosomal protein P0 (L10E)
Length = 319
Score = 187 bits (474), Expect = 3e-47
Identities = 99/175 (56%), Positives = 122/175 (69%), Gaps = 3/175 (1%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 104 ANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKP 163
Query: 182 GDIVKQSEAQLLQMLK---IFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQ 352
GD V SEA LL ML I PF YGL IQQ+Y+NGS YSP+ LDITED + + F++ +
Sbjct: 164 GDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVR 223
Query: 353 KVAAVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+A+V L + PTLAS+PH I N K V+ ++V TDY AE +K YL DPT F
Sbjct: 224 NIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAF 278
>sp|P05388|RLA0_HUMAN 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 186 bits (473), Expect = 4e-47
Identities = 97/172 (56%), Positives = 121/172 (70%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 104 ANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKT 163
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD V SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA
Sbjct: 164 GDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVA 223
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 224 SVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P19945|RLA0_RAT 60S acidic ribosomal protein P0 (L10E)
Length = 317
Score = 186 bits (472), Expect = 5e-47
Identities = 98/172 (56%), Positives = 120/172 (69%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 104 ANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKT 163
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD V SEA LL ML I PF +GL IQQ+++NGS YSP+ LDITE + F+E + VA
Sbjct: 164 GDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVA 223
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 224 SVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 275
>sp|P47826|RLA0_CHICK 60S acidic ribosomal protein P0 (L10E)
Length = 316
Score = 186 bits (472), Expect = 5e-47
Identities = 95/172 (55%), Positives = 122/172 (70%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 104 ANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKT 163
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD V SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + + F+E + VA
Sbjct: 164 GDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVA 223
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PT+ASVPH I N K V+ ++V TDY AE +K +L DP+ F
Sbjct: 224 SVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAF 275
>sp|Q95140|RLA0_BOVIN 60S acidic ribosomal protein P0 (L10E)
Length = 309
Score = 184 bits (467), Expect = 2e-46
Identities = 96/172 (55%), Positives = 120/172 (69%)
Frame = +2
Query: 2 SQKIQAPAKADAVAPVSVMVPKQLTTLGPEKTSFFQALQIPTKITRGTIEIINDVDLIKA 181
+ K+ A A+A A+AP V VP Q T LGPEKTSFFQAL I TKI+RGTIEI++DV LIK
Sbjct: 95 ANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKT 154
Query: 182 GDIVKQSEAQLLQMLKIFPFQYGLKIQQIYENGSCYSPDALDITEDDILRGFMESTQKVA 361
GD SEA LL ML I PF +GL IQQ+++NGS Y+P+ LDITE+ + F+E + VA
Sbjct: 155 GDKEGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVA 214
Query: 362 AVSLALNKPTLASVPHIIANTIKAVIGLSVVTDYNLKEAEGIKEYLKDPTKF 517
+V L + PT+ASVPH I N K V+ LSV TDY AE +K +L DP+ F
Sbjct: 215 SVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAF 266
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,103,312
Number of Sequences: 369166
Number of extensions: 1175503
Number of successful extensions: 3105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3099
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)