Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C17
(762 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40065|YET6_YEAST Hypothetical 35.8 kDa protein in NUP15... 37 0.058
sp|Q10191|YAWH_SCHPO Hypothetical protein C3F10.17 in chrom... 34 0.38
sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen) 33 0.84
sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain 32 2.4
sp|P30199|EPIP_STAEP Epidermin leader peptide-processing se... 31 3.2
sp|Q8D244|PUR9_WIGBR Bifunctional purine biosynthesis prote... 31 4.2
sp|P39646|PTA_BACSU Phosphate acetyltransferase (Phosphotra... 30 9.3
sp|Q03563|SPK1_CAEEL Serine/threonine-protein kinase spk-1 30 9.3
sp|P16628|VMAT_MEASB Matrix protein 30 9.3
>sp|P40065|YET6_YEAST Hypothetical 35.8 kDa protein in NUP157-PDH5 intergenic region
Length = 302
Score = 37.0 bits (84), Expect = 0.058
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Frame = +1
Query: 58 DDPTESANIIVPLEPEHFKY----GIYFNDGYDYMSHLISREDFDDVTVDLKELVNQSRA 225
D+ + NI++ + +H++Y + + DY + +E+ +D+T+++ ++ +
Sbjct: 162 DESWKMENILLKEQEKHYEYFPIGQLLIPNNIDYTNKQKRKENIEDLTIEIDSIIETNHQ 221
Query: 226 KCKMLPSQVMKSATVIKEFE-AEDDYNCDDRETV 324
K + LP V+ + +E E A DD++ D R+ +
Sbjct: 222 KKRFLPQSVL----IKREDEIAFDDFHLDARKVL 251
>sp|Q10191|YAWH_SCHPO Hypothetical protein C3F10.17 in chromosome I
Length = 386
Score = 34.3 bits (77), Expect = 0.38
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Frame = +1
Query: 70 ESANIIVPLEPEHFKYGIYFND-GYDYMSHLISREDFDDVTVDL----------KELVNQ 216
E + I P E E YGIYF+D YDYM HL + + D V+ K+ Q
Sbjct: 58 EYGSTIRPNEGEAANYGIYFDDTEYDYMQHLRNIGNEDATWVEAPATRKTQDKQKKQQIQ 117
Query: 217 SRAKCKMLPSQVMKSATVIKEFEAEDDYNCDDRETV 324
R + +LP +V+ S E E E Y D+++V
Sbjct: 118 LRDQPSILPQEVLPS-----EVELERTY--QDQQSV 146
>sp|P21249|ANT1_ONCVO Major antigen (Myosin-like antigen)
Length = 2022
Score = 33.1 bits (74), Expect = 0.84
Identities = 54/238 (22%), Positives = 94/238 (39%), Gaps = 4/238 (1%)
Frame = +1
Query: 43 NDLLKDDPTESANIIVPLEPEHFKYGIYFNDGYDYMSHLISREDFDDVTVDLKELVNQSR 222
N LKD+ N I +E E Y + + E+ D+ LK L N +
Sbjct: 560 NKRLKDENDGMKNRIQDIEKE-------------YNTIIRKLEEKDNA---LKNLENTRQ 603
Query: 223 AKCKMLPSQVMKSATVIKEFE-AEDDYNCDDRETV-LEKLQKAAKDNIDEDILNXXXXXX 396
L Q + T+ EF+ +Y+ ++ TV +E K K+ DE I
Sbjct: 604 RLVNELEEQRTRFDTMTSEFDNLRTNYDSANKNTVAIELTVKQIKEQRDEIIKQKDKLAK 663
Query: 397 XXXXXXXXFVDIADTINVKPVIKGDKDIFSQFFGNKIEKDGDDLGDFVDNIRQPINDISK 576
D+ + +N + ++GD + +Q ++I DN ++ IN+
Sbjct: 664 E-------LADLENKLNNETKMRGDAEKLNQRHLDEI-----------DNFKKQINEYIT 705
Query: 577 QINFGEGYNDSLRYQMPKDLSSKRSIMSKAFLHAYEKFK--NEGEKKLQFEAIDKSGA 744
++ ND QM K +K S M + + A ++ + +E +LQ + D GA
Sbjct: 706 EVTIIRRQNDDFDTQM-KTNQAKLSSMKNSLIAAKKEIEKLSEMNNRLQQDKNDLIGA 762
>sp|P21421|RPOB_PLAFA DNA-directed RNA polymerase beta chain
Length = 1024
Score = 31.6 bits (70), Expect = 2.4
Identities = 26/69 (37%), Positives = 36/69 (52%)
Frame = -1
Query: 621 LVSQRIIISFSKVNLF*NIINRLSYVIDKISQIITVLFNFISKKLTKNILISFNNWFYID 442
LV IIS + L II L Y I ++ I V FNFI K+ IL++ N ID
Sbjct: 9 LVKNNYIISNLYLLLIQEIIYNLRYYILFLNNNINVKFNFIYYKII--ILLTNININSID 66
Query: 441 SIRNIYKII 415
+I+NI ++
Sbjct: 67 TIQNINNLL 75
>sp|P30199|EPIP_STAEP Epidermin leader peptide-processing serine protease epiP precursor
Length = 461
Score = 31.2 bits (69), Expect = 3.2
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Frame = +1
Query: 469 DKDIFSQFFGNKIEKDGDDLGDFVDNIRQPINDISKQINFGEGY---------NDSLRYQ 621
D D+ + GN + KD + D+ + + + K IN+ + ND + +
Sbjct: 244 DNDVINVSLGNYLIKDNQNKKKLRDDEKVDYDALQKAINYAQKKGSIVVAAVGNDGINVK 303
Query: 622 MPKDLSSKRSIMSKAFLHAYEKFKN 696
K+++ KR++ SK Y+ N
Sbjct: 304 KVKEINKKRNLNSKTSKKVYDSPAN 328
>sp|Q8D244|PUR9_WIGBR Bifunctional purine biosynthesis protein purH [Includes:
Phosphoribosylaminoimidazolecarboxamide
formyltransferase (AICAR transformylase); IMP
cyclohydrolase (Inosinicase) (IMP synthetase) (ATIC)]
Length = 529
Score = 30.8 bits (68), Expect = 4.2
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Frame = +2
Query: 290 KMIITVMIEKLY*RNFKKQPKITLMKIF*MPLIVMQSSLNWKMXXXXXXXXSM*NQLLKE 469
++II +IEK K + KI +++ + LN+K N++LKE
Sbjct: 342 EIIIAPVIEKDALLTLKSKSKIIVLEC---GYLSKNFLLNFKKVNCGLLLQDSDNKILKE 398
Query: 470 IRIFLVSFLE---IKLKRTVMIWEILSIT*DNRLMIFQNKLTL 589
I +VS + ++++ ++ IW+I+ N ++ +NK TL
Sbjct: 399 KDIKIVSKRQPSKLEIESSIFIWKIIKFIKSNAIIYGKNKRTL 441
>sp|P39646|PTA_BACSU Phosphate acetyltransferase (Phosphotransacetylase) (Vegetative
protein 43) (VEG43)
Length = 323
Score = 29.6 bits (65), Expect = 9.3
Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Frame = +1
Query: 193 DLKELVNQSRAKCKMLPSQVMKSATVIKEFEAEDDYNCDDRETVLEKLQKAAKDNIDEDI 372
DL E+ +S KM ++ + F + D+ E V + + K AK+ E
Sbjct: 177 DLAEIAIESANTAKMFD---IEPRVAMLSFSTKGSAKSDETEKVADAV-KIAKEKAPELT 232
Query: 373 LNXXXXXXXXXXXXXXFVDIADTINVKPVIKGDKDIF---SQFFGNKIEKDGDDLGDF-- 537
L+ +A+ IKGD ++F S GN K LG+F
Sbjct: 233 LDGEFQFDAAFVP-----SVAEKKAPDSEIKGDANVFVFPSLEAGNIGYKIAQRLGNFEA 287
Query: 538 ----VDNIRQPINDISKQINFGEGYNDSL 612
+ + P+ND+S+ N + YN +L
Sbjct: 288 VGPILQGLNMPVNDLSRGCNAEDVYNLAL 316
>sp|Q03563|SPK1_CAEEL Serine/threonine-protein kinase spk-1
Length = 1003
Score = 29.6 bits (65), Expect = 9.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 403 RALHHYQGHLKYLHQCYLWLLFEVSLVQFLYHH 305
R H GHL ++HQ W L+EV ++ + H
Sbjct: 839 REFFHKNGHLLHIHQLKPWSLYEVLRQKYEWSH 871
>sp|P16628|VMAT_MEASB Matrix protein
Length = 343
Score = 29.6 bits (65), Expect = 9.3
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +1
Query: 181 DVTVDLKELVNQSRAKCKMLPSQVMKSATVIKEFEAEDDYNCDDRETVLEKLQKAAKDN 357
D+ DL L+ +SR CK+ Q + +V +EF DD +D + + + LQ N
Sbjct: 286 DINEDLNRLLWRSR--CKIARIQAVLQPSVPQEFRIYDDVIINDDQGLFKALQTVVPSN 342
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,897,968
Number of Sequences: 369166
Number of extensions: 1380649
Number of successful extensions: 4334
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4332
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)