Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C09
(685 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta... 110 3e-24
sp|P26308|GBB1_DROME Guanine nucleotide-binding protein bet... 110 4e-24
sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/... 109 6e-24
sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I... 109 6e-24
sp|Q5R5W8|GBB1_PONPY Guanine nucleotide-binding protein G(I... 109 8e-24
sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I... 108 1e-23
sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I... 108 1e-23
sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein bet... 108 2e-23
sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein bet... 108 2e-23
sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I... 108 2e-23
>sp|P23232|GBB_LOLFO Guanine nucleotide-binding protein beta subunit
Length = 341
Score = 110 bits (276), Expect = 3e-24
Identities = 46/76 (60%), Positives = 61/76 (80%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL+ GYDD+NC+VWDVL++ER G+++ HD RVSC+ V+ +
Sbjct: 265 YSHDNIICGITSVAFSKSGRLLLGGYDDFNCNVWDVLKQERAGVLAGHDNRVSCLGVTED 324
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 325 GMAVATGSWDSFLKIW 340
Score = 37.4 bits (85), Expect = 0.037
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ R ++G D + ++D+ + H+ ++ ++ PNG ATGS D+
Sbjct: 190 SLSLAPDMRTFVSGACDASAKLFDIRDGICKQTFTGHESDINAITYFPNGFAFATGSDDA 249
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 250 TCRLFDIRADQ 260
>sp|P26308|GBB1_DROME Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 110 bits (274), Expect = 4e-24
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL+AGYDD+NC+VWD ++ ER GI++ HD RVSC+ V+ N
Sbjct: 264 YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTMKAERSGILAGHDNRVSCLGVTEN 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS +W
Sbjct: 324 GMAVATGSWDSFLRVW 339
Score = 39.3 bits (90), Expect = 0.010
Identities = 18/71 (25%), Positives = 36/71 (50%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
++SL+ + ++G D + +WD+ H+ ++ V+ PNG ATGS D+
Sbjct: 189 ALSLAPQCKTFVSGACDASAKLWDIREGVCKQTFPGHESDINAVTFFPNGQAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDIRADQ 259
Score = 33.5 bits (75), Expect = 0.53
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D +C +WD+ +V H G V +S++P +G+ D+S +W
Sbjct: 157 IVTSSGDMSCGLWDIETGLQVTSFLGHTGDVMALSLAPQCKTFVSGACDASAKLW 211
>sp|P54311|GBB1_RAT Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62874|GBB1_MOUSE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62873|GBB1_HUMAN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62872|GBB1_CANFA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
sp|P62871|GBB1_BOVIN Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 109 bits (273), Expect = 6e-24
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSVS SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ RL ++G D + +WDV + H+ ++ + PNG ATGS D+
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S++P+ +G+ D+S +W
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD +V + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>sp|Q6TMK6|GBB1_CRIGR Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 109 bits (273), Expect = 6e-24
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSVS SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ RL ++G D + +WDV + H+ ++ + PNG ATGS D+
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 35.0 bits (79), Expect = 0.18
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ +D C +WD+ ++ + H G V +S++P+ +G+ D+S +W
Sbjct: 157 IVTSSEDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD +V + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>sp|Q5R5W8|GBB1_PONPY Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 109 bits (272), Expect = 8e-24
Identities = 46/76 (60%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSVS SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDDRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ RL ++G D + +WDV + H+ ++ + PNG ATGS D+
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S++P+ +G+ D+S +W
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD +V + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>sp|P79959|GBB1_XENLA Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1) (XGbeta1)
Length = 340
Score = 108 bits (270), Expect = 1e-23
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKADRAGVLAGHDNRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 42.0 bits (97), Expect = 0.002
Identities = 20/71 (28%), Positives = 36/71 (50%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ R ++G D + +WDV + H+ ++ + PNG ATGS D+
Sbjct: 189 SLSLAPDSRCFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 35.4 bits (80), Expect = 0.14
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
+I D C +WD+ ++ + H G V +S++P+ +G+ D+S +W
Sbjct: 157 IITSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDSRCFVSGACDASAKLW 211
Score = 30.8 bits (68), Expect = 3.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD +V + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICPIYNLK 127
>sp|Q6PH57|GBB1_BRARE Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 108 bits (270), Expect = 1e-23
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 43.1 bits (100), Expect = 7e-04
Identities = 21/71 (29%), Positives = 37/71 (52%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SL+ RL ++G D + +WDV + H+ ++ + PNG ATGS D+
Sbjct: 189 SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 33.9 bits (76), Expect = 0.41
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S++P+ +G+ D+S +W
Sbjct: 157 IVTSSGDTTCALWDIETGQQTTTFAGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 31.2 bits (69), Expect = 2.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD +V + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>sp|P17343|GBB1_CAEEL Guanine nucleotide-binding protein beta subunit 1
sp|Q61ZF6|GBB1_CAEBR Guanine nucleotide-binding protein beta subunit 1
Length = 340
Score = 108 bits (269), Expect = 2e-23
Identities = 45/76 (59%), Positives = 59/76 (77%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL AGYDD+NC+VWD +R+ER G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVAFSKSGRLLFAGYDDFNCNVWDSMRQERAGVLAGHDNRVSCLGVTED 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ + TGSWDS IW
Sbjct: 324 GMAVCTGSWDSFLKIW 339
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SLS R I+G D + +WD+ H+ ++ V+ P+G ATGS D+
Sbjct: 189 SLSLSPDFRTFISGACDASAKLWDIRDGMCKQTFPGHESDINAVAFFPSGNAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDIRADQ 259
Score = 35.0 bits (79), Expect = 0.18
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S+SP+ +G+ D+S +W
Sbjct: 157 IVTSSGDMTCALWDIETGQQCTAFTGHTGDVMSLSLSPDFRTFISGACDASAKLW 211
Score = 30.0 bits (66), Expect = 5.9
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 46 SKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLI 225
+ R L++ D VWD +V + V + +P+G +A G D+ C I
Sbjct: 64 ASDSRNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSFVACGGLDNICSI 123
Query: 226 WTSK 237
++ K
Sbjct: 124 YSLK 127
>sp|Q9HAV0|GBB4_HUMAN Guanine nucleotide-binding protein beta subunit 4 (Transducin beta
chain 4)
Length = 340
Score = 108 bits (269), Expect = 2e-23
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSGRLL+AGYDD+NC+VWD L+ +R G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVAFSKSGRLLLAGYDDFNCNVWDTLKGDRAGVLAGHDNRVSCLGVTDD 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLRIW 339
Score = 41.2 bits (95), Expect = 0.003
Identities = 22/71 (30%), Positives = 36/71 (50%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SLS R ++G D + +WD+ + H ++ VS PNG ATGS D+
Sbjct: 189 SLSLSPDMRTFVSGACDASSKLWDIRDGMCRQSFTGHVSDINAVSFFPNGYAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDLRADQ 259
Score = 35.8 bits (81), Expect = 0.11
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S+SP+ +G+ D+S +W
Sbjct: 157 IVTSSGDTTCALWDIETAQQTTTFTGHSGDVMSLSLSPDMRTFVSGACDASSKLW 211
Score = 30.0 bits (66), Expect = 5.9
Identities = 15/60 (25%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
RLL++ D +WD ++ + V + +P+G +A G D+ C I+ K
Sbjct: 68 RLLVSASQDGKLIIWDSYTTNKMHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127
>sp|O45040|GBB1_HOMAM Guanine nucleotide-binding protein G(I)/G(S)/G(T) beta subunit 1
(Transducin beta chain 1)
Length = 340
Score = 108 bits (269), Expect = 2e-23
Identities = 45/76 (59%), Positives = 60/76 (78%)
Frame = +1
Query: 1 YTDDYITCGSTSVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPN 180
Y+ D I CG TSV+ SKSG+LL+AGYDD+NC+VWD +R ER G+++ HD RVSC+ V+ +
Sbjct: 264 YSHDNIICGITSVAFSKSGKLLLAGYDDFNCNVWDSMRTERAGVLAGHDNRVSCLGVTED 323
Query: 181 GVGIATGSWDSSCLIW 228
G+ +ATGSWDS IW
Sbjct: 324 GMAVATGSWDSFLKIW 339
Score = 40.0 bits (92), Expect = 0.006
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +1
Query: 34 SVSLSKSGRLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDS 213
S+SLS + R +G D + +WD+ H+ ++ V+ PNG ATGS D+
Sbjct: 189 SLSLSPNMRTFTSGACDASAKLWDIRDGMCRQTFPGHESDINAVTFFPNGHAFATGSDDA 248
Query: 214 SCLIWTSKPSQ 246
+C ++ + Q
Sbjct: 249 TCRLFDIRADQ 259
Score = 36.6 bits (83), Expect = 0.063
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +1
Query: 64 LIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIW 228
++ D C +WD+ ++ + H G V +S+SPN +G+ D+S +W
Sbjct: 157 IVTSSGDMTCALWDIETGQQCTQFTGHTGDVMSLSLSPNMRTFTSGACDASAKLW 211
Score = 29.6 bits (65), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 58 RLLIAGYDDYNCHVWDVLREERVGIMSAHDGRVSCVSVSPNGVGIATGSWDSSCLIWTSK 237
R L++ D VWD +V + V + +P+G +A G D+ C I++ K
Sbjct: 68 RNLVSASQDGKLIVWDSYTTNKVHAIPLRSSWVMTCAYAPSGSYVACGGLDNICSIYSLK 127
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,623,578
Number of Sequences: 369166
Number of extensions: 1229150
Number of successful extensions: 4149
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4106
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)