Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C06-2
(326 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C (Kines... 33 0.26
sp|P31916|MAT2_EUGGR Maturase-like protein 2 32 0.58
sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C (Kines... 32 0.58
sp|P45157|EX5B_HAEIN Exodeoxyribonuclease V beta chain 31 1.00
sp|Q58173|Y763_METJA Hypothetical protein MJ0763 31 1.00
sp|Q98QP0|PEPF_MYCPU Oligoendopeptidase F homolog 29 3.8
sp|Q6P2U9|CSN3_BRARE COP9 signalosome complex subunit 3 (Si... 29 3.8
sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 (Mitotic k... 28 4.9
sp|P21223|OMP7_STAAU 65 kDa outer membrane protein precurso... 28 4.9
sp|Q5HEI2|OMP7_STAAC 77 kDa outer membrane protein precursor 28 4.9
>sp|O60282|KIF5C_HUMAN Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
2)
Length = 957
Score = 32.7 bits (73), Expect = 0.26
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = -1
Query: 245 QKQRRKYSDLQDRKQQIINEIDDYEMKLCVFQEKYSICFNE 123
QKQ + D + KQ+II+EI D KL + QEK S +N+
Sbjct: 715 QKQLSRLRDEIEEKQKIIDEIRDLNQKLQLEQEKLSSDYNK 755
>sp|P31916|MAT2_EUGGR Maturase-like protein 2
Length = 758
Score = 31.6 bits (70), Expect = 0.58
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 62 RNVWIKSGFSFYFK*NCYPGFH*NKWNIFLEIHTVSFRSHRF 187
+N++ S +FK NCYP F+ K F +T SFR +F
Sbjct: 446 KNIFHYSRCFNFFKKNCYPNFYKKKNFSFFNFYTESFRILKF 487
>sp|P28738|KIF5C_MOUSE Kinesin heavy chain isoform 5C (Kinesin heavy chain neuron-specific
2)
Length = 956
Score = 31.6 bits (70), Expect = 0.58
Identities = 17/41 (41%), Positives = 25/41 (60%)
Frame = -1
Query: 245 QKQRRKYSDLQDRKQQIINEIDDYEMKLCVFQEKYSICFNE 123
QKQ + D + KQ+II+EI D KL + QE+ S +N+
Sbjct: 714 QKQLSRLRDEIEEKQRIIDEIRDLNQKLQLEQERLSSDYNK 754
>sp|P45157|EX5B_HAEIN Exodeoxyribonuclease V beta chain
Length = 1211
Score = 30.8 bits (68), Expect = 1.00
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -1
Query: 266 FNSLTSFQKQRRKYSDLQDRKQQIINEIDDYEMKLCVFQEKYSICFNENPDN--NFI*NR 93
F S+ +++ +++ +K + ++ DY+ + + E + NEN N + +
Sbjct: 933 FTSIEQAHRRQNYFTESAGKKHAVFDDAKDYDSQNAI--EISTALLNENESNILDLPRGK 990
Query: 92 KRNHF*SKHFENCYFN 45
+ +HFENCYF+
Sbjct: 991 QVGTALHRHFENCYFS 1006
>sp|Q58173|Y763_METJA Hypothetical protein MJ0763
Length = 121
Score = 30.8 bits (68), Expect = 1.00
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -1
Query: 230 KYSDLQDRKQQIINEIDDYEMK-LCVFQEKYSICFNENPD 114
K+ +++ + +I ++ D EMK L + EKY I FNE P+
Sbjct: 23 KFKSVEEYEGRIFKDLFDVEMKNLEILYEKYLIYFNEKPN 62
>sp|Q98QP0|PEPF_MYCPU Oligoendopeptidase F homolog
Length = 613
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -1
Query: 326 NFILEKFSITKFVEKCIDALFNSLTSFQKQRRKYSDLQDRKQQIINEIDDYEMKLCVFQE 147
+F+ E K ++ D + ++ FQK + Y ++K E D + L V E
Sbjct: 259 SFLFEDQVDEKLLKNLYDKVSSNKKVFQKYYQNYKKFFEKKNSKQMEAWDIYLPLVVVDE 318
Query: 146 KYSI 135
KYSI
Sbjct: 319 KYSI 322
>sp|Q6P2U9|CSN3_BRARE COP9 signalosome complex subunit 3 (Signalosome subunit 3)
Length = 423
Score = 28.9 bits (63), Expect = 3.8
Identities = 17/72 (23%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Frame = -1
Query: 317 LEKFSITKFVEKCIDALFNSLTSFQKQ----RRKYSDLQDRKQQIINEIDDYEMKLCVFQ 150
L K ++ +K I L + + Q R + S Q+ ++ +++ I+D E+ + Q
Sbjct: 294 LVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIYASINQ 353
Query: 149 EKYSICFNENPD 114
+ +CF++NP+
Sbjct: 354 KDGMVCFHDNPE 365
>sp|Q02241|KIF23_HUMAN Kinesin-like protein KIF23 (Mitotic kinesin-like protein 1)
(Kinesin-like protein 5)
Length = 856
Score = 28.5 bits (62), Expect = 4.9
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 284 KCIDALFNSLTSFQKQRRKYSDLQDRKQQIINEID 180
+C+D +FNS+ SFQ +R + I E+D
Sbjct: 134 RCLDMIFNSIGSFQAKRYVFKSNDRNSMDIQCEVD 168
>sp|P21223|OMP7_STAAU 65 kDa outer membrane protein precursor (map-ND2C)
Length = 584
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 269 LFNSLTSFQKQRRKYSDLQDRKQQIINE---IDDYEMKLCVFQEKYSICF 129
+ +SLT + Q Y DL+DR + ++ I D +++L Q KY++ F
Sbjct: 64 ILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSK-QAKYTVYF 112
>sp|Q5HEI2|OMP7_STAAC 77 kDa outer membrane protein precursor
Length = 684
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = -1
Query: 269 LFNSLTSFQKQRRKYSDLQDRKQQIINE---IDDYEMKLCVFQEKYSICF 129
+ +SLT + Q Y DL+DR + ++ I D +++L Q KY++ F
Sbjct: 64 ILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSK-QAKYTVYF 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,240,687
Number of Sequences: 369166
Number of extensions: 584658
Number of successful extensions: 1580
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)