Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C06-1
(470 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner m... 127 1e-29
sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane t... 125 6e-29
sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane t... 124 1e-28
sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane t... 122 4e-28
sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane t... 121 7e-28
sp|O35092|TI17A_RAT Mitochondrial import inner membrane tra... 121 7e-28
sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner m... 119 3e-27
sp|P39515|TIM17_YEAST Mitochondrial import inner membrane t... 116 2e-26
sp|O44477|TIM17_CAEEL Probable mitochondrial import inner m... 112 4e-25
sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner m... 110 2e-24
>sp|Q9VNA0|TI17A_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 1
Length = 179
Score = 127 bits (319), Expect = 1e-29
Identities = 61/138 (44%), Positives = 86/138 (62%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
GA+GGG F + GF++APSGL RL + RS ++GG+FA+WG TFS +DC+L+Y
Sbjct: 24 GALGGGAFQAIKGFRNAPSGLGYRLSGGLAAVRARSGLVGGNFAVWGATFSAIDCSLVYF 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVE 365
RKKEDP N+I++G TGG+LA R G + + A VG LL +IEG GI+ +S + +
Sbjct: 84 RKKEDPWNAIISGATTGGILAARTGLTSMLSSALVGGALLALIEGVGIVVSHYSADSYRQ 143
Query: 366 ESMPDNNQTISHQSLGLQ 419
S + Q + L Q
Sbjct: 144 VSPVERQQRYKQELLRQQ 161
>sp|O60830|TI17B_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 B
(JM3)
Length = 172
Score = 125 bits (313), Expect = 6e-29
Identities = 59/116 (50%), Positives = 79/116 (68%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGGG+F + GF++AP G+ RL +A +IR+P +GGSFA+WGG FS +DC L+
Sbjct: 24 GVIGGGVFQAIKGFRNAPVGIRHRLRGSANAVRIRAPQIGGSFAVWGGLFSTIDCGLVRL 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 353
R KEDP NSI +G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 84 RGKEDPWNSITSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|Q99595|TI17A_HUMAN Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 124 bits (310), Expect = 1e-28
Identities = 57/115 (49%), Positives = 80/115 (69%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGGG+F + GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++
Sbjct: 24 GTIGGGIFQAIKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSMIDCSMVQV 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 350
R KEDP NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 84 RGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9Z0V8|TI17A_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 122 bits (306), Expect = 4e-28
Identities = 57/115 (49%), Positives = 79/115 (68%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGGG+F GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC+++
Sbjct: 24 GTIGGGIFQAFKGFRNSPVGINHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCSMVQI 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 350
R KEDP NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 84 RGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9Z0V7|TI17B_MOUSE Mitochondrial import inner membrane translocase subunit Tim17 B
Length = 172
Score = 121 bits (304), Expect = 7e-28
Identities = 57/116 (49%), Positives = 77/116 (66%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGGG+F + GF++AP G+ R + +IR+P +GGSFA+WGG FS +DC L+
Sbjct: 24 GVIGGGVFQAIKGFRNAPVGIRHRFRGSVNAVRIRAPQIGGSFAVWGGLFSTIDCGLVRL 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQ 353
R KEDP NSI +G +TG VLA R G + G A +G +LL +IEG GIL R++ Q
Sbjct: 84 RGKEDPWNSISSGALTGAVLAARSGPLAMVGSAMMGGILLALIEGVGILLTRYTAQ 139
>sp|O35092|TI17A_RAT Mitochondrial import inner membrane translocase subunit Tim17 A
(Inner membrane preprotein translocase Tim17a)
Length = 171
Score = 121 bits (304), Expect = 7e-28
Identities = 57/115 (49%), Positives = 78/115 (67%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGGG+F GF+++P G++ RL + T K R+P LGGSFA+WGG FS +DC ++
Sbjct: 24 GTIGGGIFQAFKGFRNSPVGVNHRLRGSLTAIKTRAPQLGGSFAVWGGLFSTIDCGMVQI 83
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFST 350
R KEDP NSI +G +TG +LA R G + G A +G +LL +IEG GIL RF++
Sbjct: 84 RGKEDPWNSITSGALTGAILAARNGPVAMVGSAAMGGILLALIEGAGILLTRFAS 138
>sp|Q9VGA2|TI17C_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 3
Length = 222
Score = 119 bits (299), Expect = 3e-27
Identities = 56/107 (52%), Positives = 75/107 (70%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G IGG LF F+ GF++AP+GL +RL K+R+P + GSFA+WG TFS VDCAL++
Sbjct: 23 GTIGGSLFEFLKGFRNAPTGLQRRLYGGIDLVKMRTPSIAGSFAVWGATFSTVDCALVHY 82
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCG 326
R++ED NSIL+G TGG+LA R G +A A VG ++L +IEG G
Sbjct: 83 RQREDAWNSILSGAATGGILAARNGIRAMANSALVGCLVLAMIEGAG 129
>sp|P39515|TIM17_YEAST Mitochondrial import inner membrane translocase subunit TIM17
(Mitochondrial protein import protein 2) (Mitochondrial
inner membrane protein MIM17)
Length = 158
Score = 116 bits (291), Expect = 2e-26
Identities = 56/114 (49%), Positives = 79/114 (69%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
GAIGG +++ + GF+++P G +R A + K R+PVLGG+F +WGG FS DCA+
Sbjct: 25 GAIGGVVWHGIKGFRNSPLG--ERGSGAMSAIKARAPVLGGNFGVWGGLFSTFDCAVKAV 82
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFS 347
RK+EDP N+I+AG TGG LA+RGGW + A LLG+IEG G++FQR++
Sbjct: 83 RKREDPWNAIIAGFFTGGALAVRGGWRHTRNSSITCACLLGVIEGVGLMFQRYA 136
>sp|O44477|TIM17_CAEEL Probable mitochondrial import inner membrane translocase subunit
Tim17
Length = 181
Score = 112 bits (280), Expect = 4e-25
Identities = 58/136 (42%), Positives = 86/136 (63%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G +GG +F G+K+A G K+L+ ++RS + G FA WGG FS +DC L+
Sbjct: 24 GLVGGSIFQAFGGYKNAAKG--KKLVGMMREVRMRSTLTGVQFAAWGGMFSTIDCCLVAI 81
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCGILFQRFSTQAIVE 365
RKKEDPINSI++GG+TG +LAIR G +AG A +G+V+L +IEG G++ R+ A+++
Sbjct: 82 RKKEDPINSIVSGGLTGALLAIRSGPKVMAGSAILGSVILAMIEGVGLVTTRW-MGAMMD 140
Query: 366 ESMPDNNQTISHQSLG 413
+ P +SLG
Sbjct: 141 PTQPPPEALDDPRSLG 156
>sp|Q9VN97|TI17D_DROME Probable mitochondrial import inner membrane translocase subunit
Tim17 4
Length = 224
Score = 110 bits (275), Expect = 2e-24
Identities = 49/107 (45%), Positives = 73/107 (68%)
Frame = +3
Query: 6 GAIGGGLFNFVAGFKDAPSGLSKRLISAATRCKIRSPVLGGSFAMWGGTFSCVDCALIYG 185
G +GG LF ++ GF++APSGL + L ++R+P + GSFA+WG TFS VDC ++
Sbjct: 23 GTMGGSLFQYLKGFRNAPSGLRRGLHGGIESVRLRTPAIAGSFAIWGATFSTVDCVMVSY 82
Query: 186 RKKEDPINSILAGGITGGVLAIRGGWSQVAGQAFVGAVLLGIIEGCG 326
R++ED N+I++G TGG+LA R G +A AFVG ++L ++EG G
Sbjct: 83 RQREDSWNAIVSGAATGGILAARNGIRAMANSAFVGCLVLAMLEGAG 129
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,447,188
Number of Sequences: 369166
Number of extensions: 1236735
Number of successful extensions: 4079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)