Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C04
(810 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52654|TF2AA_DROME Transcription initiation factor IIA s... 69 1e-11
sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA s... 69 2e-11
sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA s... 69 2e-11
sp|Q5RCU0|TF2AA_PONPY Transcription initiation factor IIA s... 69 2e-11
sp|O08949|TF2AA_RAT Transcription initiation factor IIA sub... 69 2e-11
sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor (Gen... 62 2e-09
sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor (Gen... 59 2e-08
sp|P32773|TOA1_YEAST Transcription initiation factor IIA la... 36 0.14
sp|Q21767|SRD2_CAEEL Serpentine receptor class delta-2 (Pro... 33 1.2
sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromo... 32 1.6
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 (dTFIIA-L) [Contains:
Transcription initiation factor IIA alpha chain (TFIIA
p30 subunit); Transcription initiation factor IIA beta
chain (TFIIA p20 subunit)]
Length = 366
Score = 69.3 bits (168), Expect = 1e-11
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGIAN 810
PLNSEDD++D+D ++F+ DNVIVCQY+K+ R+RNKWK GI N
Sbjct: 303 PLNSEDDVTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMN 349
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 (General
transcription factor IIA1) [Contains: Transcription
initiation factor IIA alpha chain (TFIIA p35 subunit);
Transcription initiation factor IIA beta chain (TFIIA
p19 subunit)]
Length = 378
Score = 68.6 bits (166), Expect = 2e-11
Identities = 25/47 (53%), Positives = 40/47 (85%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGIAN 810
PLNSEDD+SD++ +++F+ +NV+VCQY+K++R++NKWK + GI N
Sbjct: 315 PLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 361
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 (General
transcription factor IIA1) (TFIIA-42) (TFIIAL)
[Contains: Transcription initiation factor IIA alpha
chain (TFIIA p35 subunit); Transcription initiation
factor IIA beta chain (TFIIA p19 subunit)]
Length = 376
Score = 68.6 bits (166), Expect = 2e-11
Identities = 25/47 (53%), Positives = 40/47 (85%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGIAN 810
PLNSEDD+SD++ +++F+ +NV+VCQY+K++R++NKWK + GI N
Sbjct: 313 PLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 359
>sp|Q5RCU0|TF2AA_PONPY Transcription initiation factor IIA subunit 1 (General
transcription factor IIA1) [Contains: Transcription
initiation factor IIA alpha chain (TFIIA p35 subunit);
Transcription initiation factor IIA beta chain (TFIIA
p19 subunit)]
Length = 376
Score = 68.6 bits (166), Expect = 2e-11
Identities = 25/47 (53%), Positives = 40/47 (85%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGIAN 810
PLNSEDD+SD++ +++F+ +NV+VCQY+K++R++NKWK + GI N
Sbjct: 313 PLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 359
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 (General
transcription factor IIA1) [Contains: Transcription
initiation factor IIA alpha chain (TFIIA p35 subunit);
Transcription initiation factor IIA beta chain (TFIIA
p19 subunit)]
Length = 377
Score = 68.6 bits (166), Expect = 2e-11
Identities = 25/47 (53%), Positives = 40/47 (85%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGIAN 810
PLNSEDD+SD++ +++F+ +NV+VCQY+K++R++NKWK + GI N
Sbjct: 314 PLNSEDDVSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 360
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor (General transcription factor II
A, 1-like factor)
Length = 478
Score = 61.6 bits (148), Expect = 2e-09
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGI 804
PLNS DD+S+ D +F+ DNVIVCQY+K++R++NKWK G+
Sbjct: 415 PLNSGDDVSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGV 459
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor (General transcription factor II
A, 1-like factor)
Length = 468
Score = 58.9 bits (141), Expect = 2e-08
Identities = 22/45 (48%), Positives = 34/45 (75%)
Frame = +1
Query: 670 PLNSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGI 804
PLNS DD+S+ D +F+ +NVIVCQY+K++R++N+WK G+
Sbjct: 405 PLNSGDDVSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGV 449
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large chain (TFIIA 32 kDa
subunit)
Length = 286
Score = 35.8 bits (81), Expect = 0.14
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +1
Query: 676 NSEDDISDDDPEKIFEADNVIVCQYEKVNRTRNKWKLNFVSGI 804
+S+DD + E+ +N+++C Y+KV RT+ +WK + G+
Sbjct: 224 DSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGV 266
>sp|Q21767|SRD2_CAEEL Serpentine receptor class delta-2 (Protein srd-2)
Length = 347
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +1
Query: 169 VMPEQNYNTPRMTVPLIVQQGNNFRPVPMVISTNPQHALPIFPQYHSLLNQNHGTQIITD 348
V PE +Y+ + IV GN P+ + + +P P Y ++L H T++I +
Sbjct: 179 VHPEYHYDDESIWKKSIVVSGNISAFAPITLISILYMTIPCVPIYCAILYFRHNTRVILN 238
Query: 349 NNVVNL 366
N +NL
Sbjct: 239 NPHINL 244
>sp|Q9W5D0|Y34F_DROME Hypothetical protein CG12467 in chromosome 1
Length = 1561
Score = 32.3 bits (72), Expect = 1.6
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Frame = +1
Query: 55 SHFSSIMQPSDMNRNNAVRMPTLSNPTSRLIKPSGQ-GSVMPEQNYNTPRMTVPLIVQQG 231
SH SS ++ + + + P+ S TS + P+ + GS P+ + +Q
Sbjct: 477 SHNSSSTDNTETSTSGSASSPSKSLKTSSSLSPAKRSGSESPKN------AKARVHIQSR 530
Query: 232 NNFRPVPMVISTNPQHALPIFPQYHSLLNQNHGTQI 339
+ P + QH P Q+H+L NQNHG Q+
Sbjct: 531 TSTTPSSRI----NQHLQPSQHQHHTLSNQNHGHQL 562
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.313 0.130 0.381
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,172,878
Number of Sequences: 369166
Number of extensions: 1206816
Number of successful extensions: 2301
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2300
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)