Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_C02
(799 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07566|IPGD_SHIFL Inositol phosphate phosphatase ipgD (E... 33 0.69
sp|Q55286|IPGD_SHISO Inositol phosphate phosphatase ipgD (E... 33 0.69
sp|Q9RMG3|CR2AD_BACTU Pesticidal crystal protein cry2Ad (In... 33 1.2
sp|P21254|CR2AB_BACTK Pesticidal crystal protein cry2Ab (In... 32 2.6
sp|P53090|ARO8_YEAST Aromatic amino acid aminotransferase I 32 2.6
sp|P02978|CEA1_ECOLI Colicin-E1 31 3.4
sp|P27446|FYN_XIPHE Proto-oncogene tyrosine-protein kinase ... 30 5.8
sp|Q05876|FYN_CHICK Proto-oncogene tyrosine-protein kinase ... 30 7.6
sp|P39688|FYN_MOUSE Proto-oncogene tyrosine-protein kinase ... 30 7.6
sp|P53728|CYP8_YEAST Peptidyl-prolyl cis-trans isomerase CY... 30 7.6
>sp|Q07566|IPGD_SHIFL Inositol phosphate phosphatase ipgD (Effector protein ipgD)
Length = 538
Score = 33.5 bits (75), Expect = 0.69
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +1
Query: 73 ELMVNNNP--VSEVTIDFSAKESNIS-NELEVHCGSCKRLLDKQNNESYCNILKDHYLES 243
+L++ N+ + EV+++ N NEL + G R +DK N+ES C++L D++L++
Sbjct: 314 KLLIRNSDGLLKEVSVNLKVVTFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKN 373
>sp|Q55286|IPGD_SHISO Inositol phosphate phosphatase ipgD (Effector protein ipgD)
Length = 538
Score = 33.5 bits (75), Expect = 0.69
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Frame = +1
Query: 73 ELMVNNNP--VSEVTIDFSAKESNIS-NELEVHCGSCKRLLDKQNNESYCNILKDHYLES 243
+L++ N+ + EV+++ N NEL + G R +DK N+ES C++L D++L++
Sbjct: 314 KLLIRNSDGLLKEVSVNLKVVTFNFGVNELALKMGLGWRNVDKLNDESICSLLGDNFLKN 373
>sp|Q9RMG3|CR2AD_BACTU Pesticidal crystal protein cry2Ad (Insecticidal delta-endotoxin
CryIIA(d)) (Crystaline entomocidal protoxin) (71 kDa
crystal protein)
Length = 633
Score = 32.7 bits (73), Expect = 1.2
Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 3/131 (2%)
Frame = +1
Query: 289 AALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGSKVQRWEKKIHLDWLDTVAGLMAGY- 465
+ L+ G+ C ++ P+S FQH + + W+K H ++D + G +A +
Sbjct: 3 SVLNSGRNTICDAYNVVVHDPFS-FQHKSLDTIQKEWMEWKKDNHSLYVDPIVGTVASFL 61
Query: 466 --DLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREM 639
LG ++ ++LRNL+ + Q LN T+ + +
Sbjct: 62 LKKLGSLIGKRILSELRNLIFPSGSTNLMEDILRETEKFLNQKLNTDTLSRV-NAELTGL 120
Query: 640 MRKIEQLNRQM 672
+E+ NRQ+
Sbjct: 121 QANVEEFNRQV 131
>sp|P21254|CR2AB_BACTK Pesticidal crystal protein cry2Ab (Insecticidal delta-endotoxin
CryIIA(b)) (Crystaline entomocidal protoxin) (71 kDa
crystal protein)
Length = 633
Score = 31.6 bits (70), Expect = 2.6
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 3/131 (2%)
Frame = +1
Query: 289 AALDPGQMYWCKTCILIFEKPWSLFQHMADKAKGSKVQRWEKKIHLDWLDTVAGLMAGY- 465
+ L+ G+ C + P+S FQH + + W+K H +LD + G +A +
Sbjct: 3 SVLNSGRTTICDAYNVAAHDPFS-FQHKSLDTVQKEWTEWKKNNHSLYLDPIVGTVASFL 61
Query: 466 --DLGLFSLGKLRNDLRNLLADQHTIXXXXXXXXXXXXXXXQWLNPATIGNPWRLQQREM 639
+G ++ ++LRNL+ + Q LN T+ + +
Sbjct: 62 LKKVGSLVGKRILSELRNLIFPSGSTNLMQDILRETEKFLNQRLNTDTLARV-NAELTGL 120
Query: 640 MRKIEQLNRQM 672
+E+ NRQ+
Sbjct: 121 QANVEEFNRQV 131
>sp|P53090|ARO8_YEAST Aromatic amino acid aminotransferase I
Length = 500
Score = 31.6 bits (70), Expect = 2.6
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Frame = +1
Query: 190 KQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQH 369
KQ+++ + L + +L LD EG ++ F L PG T KP+
Sbjct: 274 KQDHDEFLKSLANTFLS--LDTEGRVIRMDSFSKVLAPGTRLGWITGSSKILKPYLSLHE 331
Query: 370 MADKAKGSKVQ--------RWEKKIHLDWL 435
M +A Q RW +K +LDWL
Sbjct: 332 MTIQAPAGFTQVLVNATLSRWGQKGYLDWL 361
>sp|P02978|CEA1_ECOLI Colicin-E1
Length = 522
Score = 31.2 bits (69), Expect = 3.4
Identities = 22/93 (23%), Positives = 42/93 (45%)
Frame = +1
Query: 121 SAKESNISNELEVHCGSCKRLLDKQNNESYCNILKDHYLESFLDKEGDHVKYVKFKAALD 300
+A E+ I N + ++ + + +N I + H E L K +++ + K A+D
Sbjct: 292 TASETRI-NRINADITQIQKAISQVSNNRNAGIARVHEAEENLKKAQNNLLNSQIKDAVD 350
Query: 301 PGQMYWCKTCILIFEKPWSLFQHMADKAKGSKV 399
++ EK + Q +ADK+KG K+
Sbjct: 351 ATVSFYQTLTEKYGEKYSKMAQELADKSKGKKI 383
>sp|P27446|FYN_XIPHE Proto-oncogene tyrosine-protein kinase FYN (P59-FYN)
Length = 537
Score = 30.4 bits (67), Expect = 5.8
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +1
Query: 250 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 390
D++GDHVK+ K + LD G Y T F+ L QH +D+A G
Sbjct: 194 DEKGDHVKHYKIR-KLDSGGYY--ITTRAQFDTLQQLVQHYSDRAAG 237
>sp|Q05876|FYN_CHICK Proto-oncogene tyrosine-protein kinase Fyn (p59-Fyn)
Length = 534
Score = 30.0 bits (66), Expect = 7.6
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 250 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 390
D +GDHVK+ K + LD G Y T FE L QH ++KA G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSEKADG 237
>sp|P39688|FYN_MOUSE Proto-oncogene tyrosine-protein kinase Fyn (p59-Fyn)
Length = 534
Score = 30.0 bits (66), Expect = 7.6
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = +1
Query: 250 DKEGDHVKYVKFKAALDPGQMYWCKTCILIFEKPWSLFQHMADKAKG 390
D +GDHVK+ K + LD G Y T FE L QH ++KA G
Sbjct: 194 DMKGDHVKHYKIR-KLDNGGYY--ITTRAQFETLQQLVQHYSEKADG 237
>sp|P53728|CYP8_YEAST Peptidyl-prolyl cis-trans isomerase CYP8 (PPIase) (Rotamase)
Length = 308
Score = 30.0 bits (66), Expect = 7.6
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +1
Query: 64 SNMELMVNNNPVSEVTIDF-SAKESNISNELEVHCGSCKRLLDKQNNESYCNILKDHYLE 240
+N++ N P +TI + S++E I + E H +RL D QN + I +YL
Sbjct: 194 ANVKTDENGKPEQPITIGYISSQEHRIQHAKEAHEKYLQRLQDYQNGDLEKGITLKNYLY 253
Query: 241 SFLDKEGDHVKY 276
++ + KY
Sbjct: 254 QGSQRKLEDAKY 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.134 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,021,832
Number of Sequences: 369166
Number of extensions: 1673514
Number of successful extensions: 4790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4790
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)