Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B18
(746 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67115|SYW_AQUAE Tryptophanyl-tRNA synthetase (Tryptopha... 33 1.1
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 32 1.4
sp|Q9PHL1|ERA_CAMJE GTP-binding protein era homolog 32 2.4
sp|P52835|F3ST_FLABI Flavonol 3-sulfotransferase (F3-ST) 31 3.1
sp|P52837|F4ST_FLACH Flavonol 4'-sulfotransferase (F4-ST) 31 3.1
sp|Q6Q4D0|BRU1_ARATH BRUSHY protein 1 (TONSOKU protein) (MG... 30 6.9
sp|P47371|Y125_MYCGE Hypothetical protein MG125 30 9.0
>sp|O67115|SYW_AQUAE Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 395
Score = 32.7 bits (73), Expect = 1.1
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +2
Query: 17 GVVTIKKWFSINQKLTTKYQTVLCWTVLMSYFMRKLQKKISEMVRRVWSFMTNHRVIGMN 196
G++T K W +N +L T L F KL+++ISE+V +I N
Sbjct: 94 GMITPKSWLELNPTYKDLKYNLLRLTDLEKEFKEKLKERISEIV----------NLIPFN 143
Query: 197 ITSNINYRKSIKYNIS 244
IT +R+ + N++
Sbjct: 144 ITKEEKFREHLLENLT 159
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 32.3 bits (72), Expect = 1.4
Identities = 16/75 (21%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Frame = +1
Query: 232 IQHFKLFLVGNTDNDQLVTFKSWKWSYGMIYSNKETTYKKGYLEESIEELPEHLI----- 396
++H ++G +++ +KS WS+ + S++ +Y Y++ I+ + E L
Sbjct: 932 LEHLIYSILGGCGKSKIIGYKSQIWSFSSLNSHRAHSYLLEYIKGYIKGMKEPLFLTKSG 991
Query: 397 ------SFDNANNCV 423
+D NNC+
Sbjct: 992 ASWLDQVYDERNNCI 1006
>sp|Q9PHL1|ERA_CAMJE GTP-binding protein era homolog
Length = 291
Score = 31.6 bits (70), Expect = 2.4
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 322 YSNKETTYKKGYLEESIEELPEHLISFD 405
YS+K+ +YKKG L+E ++ L EH +D
Sbjct: 146 YSSKKKSYKKGLLDEIVKYLDEHEYFYD 173
>sp|P52835|F3ST_FLABI Flavonol 3-sulfotransferase (F3-ST)
Length = 312
Score = 31.2 bits (69), Expect = 3.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Frame = +1
Query: 49 KPEIDNKISNGFVLDSFNELFYAEITK------EDFGNGKKSLEFHDQPSGYWDEYYEQH 210
K E I N L SF +L E+ K E+ + + L F G W Y+
Sbjct: 232 KEEEAGVIENIIKLCSFEKLSSLEVNKSGMHRPEEAHSIENRLYFRKGKDGDWKNYFTDE 291
Query: 211 QLQKIDKIQHFKLFLVG 261
++KIDK+ KL G
Sbjct: 292 MIEKIDKLIDEKLGATG 308
>sp|P52837|F4ST_FLACH Flavonol 4'-sulfotransferase (F4-ST)
Length = 320
Score = 31.2 bits (69), Expect = 3.1
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
Frame = +1
Query: 46 YKPEIDNKISNGFVLDSFNELFYAEITKEDFGNG----KKSLEFHDQPSGYWDEYYEQHQ 213
++ E + I + L SF L E+ K G + L F G W Y+
Sbjct: 241 FEEEKEGVIESIIKLCSFENLSNLEVNKSGNSKGFLPIENRLYFRKAKDGDWKNYFTDEM 300
Query: 214 LQKIDKIQHFKLFLVG 261
+KIDK+ KL G
Sbjct: 301 TEKIDKLIDEKLSATG 316
>sp|Q6Q4D0|BRU1_ARATH BRUSHY protein 1 (TONSOKU protein) (MGOUN protein 3)
Length = 1311
Score = 30.0 bits (66), Expect = 6.9
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = +2
Query: 59 LTTKYQTVLCWTVLMSYFMRKLQKKISEMVRRVWSFMTNHRVIGMNITSNINYRKSIKYN 238
L K V W + Y RK KKIS+ + ++G + + N+RKS+K+
Sbjct: 344 LIDKSSMVFAWLKHLQYSKRK--KKISDELCDKEKLSDAFMIVGESYQNLRNFRKSLKWF 401
Query: 239 ISNYFS*ETRTTIN---WLRLRVGNG 307
I +Y E + ++ +GNG
Sbjct: 402 IRSYEGHEAIGNLEGQALAKINIGNG 427
>sp|P47371|Y125_MYCGE Hypothetical protein MG125
Length = 285
Score = 29.6 bits (65), Expect = 9.0
Identities = 19/78 (24%), Positives = 35/78 (44%)
Frame = +1
Query: 85 VLDSFNELFYAEITKEDFGNGKKSLEFHDQPSGYWDEYYEQHQLQKIDKIQHFKLFLVGN 264
V + F ++ F N + HD GY EY + + +++I ++G+
Sbjct: 174 VYEILKNTFQEKVNVLSFSNNLIEITHHDANKGYAIEYMAKREQLSLNRIA-----VIGD 228
Query: 265 TDNDQLVTFKSWKWSYGM 318
+ ND + FK K+S+ M
Sbjct: 229 SWNDYAM-FKKAKYSFAM 245
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,170,367
Number of Sequences: 369166
Number of extensions: 1885970
Number of successful extensions: 4952
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4952
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)