Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B16
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 235 1e-61
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 225 9e-59
sp|O65353|RL5_HELAN 60S ribosomal protein L5 214 3e-55
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 210 3e-54
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 208 2e-53
sp|P09895|RL5_RAT 60S ribosomal protein L5 207 2e-53
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 207 3e-53
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 207 3e-53
sp|P22451|RL5_CHICK 60S ribosomal protein L5 207 3e-53
sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B 206 4e-53
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 235 bits (599), Expect = 1e-61
Identities = 125/254 (49%), Positives = 163/254 (64%), Gaps = 3/254 (1%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VRFTN+DI+CQI YARI+GD V+ +AY+HELPRYG+K
Sbjct: 46 TPKYRMIVRFTNKDIVCQIAYARIEGDVVICAAYAHELPRYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+DE Y G T++DG +E +D + F A LD GL RT+TGA VFGAMKG
Sbjct: 106 SRRLLNKFGLDEIYEGQTEIDGDEFYVEDVDGKPGAFRAFLDVGLARTTTGAKVFGAMKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSK 536
A DGGL+IPHS KRFPGY E ++A++H+ IFG HV +M L EE+E F RQFS+
Sbjct: 166 AADGGLDIPHSTKRFPGYDDESGDFSAEVHRSHIFGGHVSNYMKELEEEDEEAFKRQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTG-PKITLKKKMNLLQKRDRIKQI 713
YI+ G++ + +EE H AIREDP+P K KT + G K +KKM Q+RDR+KQ
Sbjct: 226 YIKHGVTADTVEEMYTKAHAAIREDPTPKK--KTDFAGKTKRWNRKKMTFSQRRDRVKQK 283
Query: 714 KDTYLAKLRAENQE 755
K ++ LRA+ QE
Sbjct: 284 KASF---LRAKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 225 bits (574), Expect = 9e-59
Identities = 117/251 (46%), Positives = 157/251 (62%), Gaps = 3/251 (1%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYRL+VR +N+D+ CQ+ Y+RI+GD ++ +AYSHELPRYG+K
Sbjct: 46 TPKYRLIVRLSNKDVTCQVAYSRIEGDHIVCAAYSHELPRYGVKVGLTNYAAAYSTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+D Y G TDV G ++E +D F LD GL RT+TG VFGAMKG
Sbjct: 106 ARRLLQRLGLDTLYTGTTDVTGDEYNVEPVDNGPGAFRCYLDVGLARTTTGRRVFGAMKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVLE-ENEAMFNRQFSK 536
AVDGGLN+PHS KRFPGY E K+NA++H+ IFG HV E+M LE ++E F RQFSK
Sbjct: 166 AVDGGLNVPHSIKRFPGYDAESKKFNAEVHRAHIFGLHVAEYMRSLEQDDEDSFKRQFSK 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTE-KTPYTGPKITLKKKMNLLQKRDRIKQI 713
YI+ G++ + IE HEAIR DPS K E K K K+K+ L ++++RIKQ
Sbjct: 226 YIKLGVTADAIEAIYKKAHEAIRADPSHKKKELKKDSVKQKRWNKRKLTLAERKNRIKQK 285
Query: 714 KDTYLAKLRAE 746
K +++ +L+A+
Sbjct: 286 KASFIKRLQAQ 296
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 214 bits (544), Expect = 3e-55
Identities = 110/253 (43%), Positives = 160/253 (63%), Gaps = 2/253 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYRLVVRF+NRDI CQ+ Y+RI+GDK+L +AY+HELP+YG+K
Sbjct: 46 TPKYRLVVRFSNRDITCQVAYSRIEGDKILCAAYAHELPQYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+D+ Y+G+T+V G+ +++ +++ F LD GL+RT+TGA VFGAMKG
Sbjct: 106 ARKLLSQLGLDKLYIGSTEVTGEEFNVKPVEDGPGAFRCYLDVGLMRTTTGARVFGAMKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSK 536
AVDGGLNI HS KRFPG+ E ++NAD+H+ IFG+HV E+M L EE++ + RQFS+
Sbjct: 166 AVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFGQHVAEYMRQLAEEDDEAYKRQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ G++ + IE HEAIR +P+ K + + T +KK+ Q++ ++ K
Sbjct: 226 YIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAHPKKRWT-EKKLTREQRQGKVAAAK 284
Query: 717 DTYLAKLRAENQE 755
+L K+ A E
Sbjct: 285 AEWLKKIEAGEVE 297
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 210 bits (535), Expect = 3e-54
Identities = 104/245 (42%), Positives = 154/245 (62%), Gaps = 6/245 (2%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYRL+VR TN+D++ Q+ Y++I+GD V++SAYSHELPRYGLK
Sbjct: 46 TPKYRLIVRITNKDVVAQLAYSKIEGDVVVASAYSHELPRYGLKVGLTNYAAAYATGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLEIDEERRPFTAVLDTGLVRTSTGANVFGAMKGA 362
+D Y G ++ G+ ++E + +R PF AVLD GL RT+TG+ +F MKG
Sbjct: 106 ARRHLKTIGLDSTYKGHEELTGEDYNVEEEGDRAPFKAVLDIGLARTTTGSKIFAVMKGV 165
Query: 363 VDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSKY 539
DGG+N+PHSE RF G+ +E +YNA+ H+DRI GKHV ++M+ L EE+E + RQFSK+
Sbjct: 166 ADGGINVPHSESRFFGFDQESKEYNAEAHRDRILGKHVADYMTYLKEEDEDRYKRQFSKF 225
Query: 540 IEAGISGENIEETIAAVHEAIREDPSPAKTEKTP----YTGPKITL-KKKMNLLQKRDRI 704
+ AG++ +N+ T VH AIR D SPA + +T ++T ++K + K+ +
Sbjct: 226 LAAGLNADNLVATYQKVHSAIRADASPAAKKAAKPSKRHTAKRLTYDERKQRVADKKALL 285
Query: 705 KQIKD 719
Q+K+
Sbjct: 286 LQLKE 290
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 208 bits (529), Expect = 2e-53
Identities = 108/244 (44%), Positives = 152/244 (62%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGIKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+D+ Y G +V G ++E ID E FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNKFGLDKVYEGQVEVTGDEYNVESIDGEPGAFTCYLDAGLTRTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++N ++H+ IF ++V E+M +L EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ G++ + +E+ H IRE+P K K K + K++L QK+DR+ Q K
Sbjct: 226 YIKNGVTADQVEDLYKKAHAGIRENPVHEKKPKKE-VKKKRWNRAKLSLEQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 207 bits (528), Expect = 2e-53
Identities = 109/244 (44%), Positives = 154/244 (63%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
MD+ Y G +V+G ++E ID + FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ ++ + +EE H AIRE+P K K K + KM+L QK+DR+ Q K
Sbjct: 226 YIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE-VKKKRWNRPKMSLAQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 207 bits (527), Expect = 3e-53
Identities = 109/244 (44%), Positives = 154/244 (63%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
MD+ Y G +V+G ++E ID + FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ ++ + +EE H AIRE+P K K K + KM+L QK+DR+ Q K
Sbjct: 226 YIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKRE-VKKKRWNRPKMSLAQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 207 bits (526), Expect = 3e-53
Identities = 109/244 (44%), Positives = 153/244 (62%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
MD+ Y G +V G ++E ID + FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ ++ + +EE H AIRE+P K K K + KM+L QK+DR+ Q K
Sbjct: 226 YIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKE-VKKKRWNRPKMSLAQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 207 bits (526), Expect = 3e-53
Identities = 106/244 (43%), Positives = 153/244 (62%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+D+ Y G +V G ++E +D + FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMS-VLEENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++NA++H+ I G++V ++M ++EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ I+ + +EE H AIR++P K K ++ KM+L QK+DR+ Q K
Sbjct: 226 YIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVKKKRVN-STKMSLAQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B
Length = 296
Score = 206 bits (525), Expect = 4e-53
Identities = 106/244 (43%), Positives = 152/244 (62%), Gaps = 2/244 (0%)
Frame = +3
Query: 3 TPKYRLVVRFTNRDIICQIVYARIDGDKVLSSAYSHELPRYGLKXXXXXXXXXXXXXXXX 182
TPKYR++VR TNRDIICQI YARI+GD ++ +AY+HELP+YG+K
Sbjct: 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLL 105
Query: 183 XXXXXXXXDMDEKYLGATDVDGKAVDLE-IDEERRPFTAVLDTGLVRTSTGANVFGAMKG 359
+D+ Y G +V G ++E +D E FT LD GL RT+TG VFGA+KG
Sbjct: 106 ARRLLNKFGLDKVYEGQVEVTGDEYNVESVDGEPGAFTCYLDAGLTRTTTGNKVFGALKG 165
Query: 360 AVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFGKHVGEFMSVL-EENEAMFNRQFSK 536
AVDGGL+IPHS KRFPGY E ++N ++H+ IF +++ E+M +L EE+E + +QFS+
Sbjct: 166 AVDGGLSIPHSTKRFPGYDSESKEFNPEVHRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQ 225
Query: 537 YIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPYTGPKITLKKKMNLLQKRDRIKQIK 716
YI+ G++ + +E+ H IRE+P K K K + K++L QK+DR+ Q K
Sbjct: 226 YIKNGVAADQLEDIYKKAHAGIRENPVHEKKPKKE-VKKKRWNRAKLSLEQKKDRVAQKK 284
Query: 717 DTYL 728
++L
Sbjct: 285 ASFL 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,150,408
Number of Sequences: 369166
Number of extensions: 1718024
Number of successful extensions: 6209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6125
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)