Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B15
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related pr... 416 e-116
sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related pr... 416 e-116
sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related pr... 412 e-115
sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related pr... 405 e-112
sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related pr... 392 e-109
sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related pr... 391 e-108
sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related pr... 390 e-108
sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related pr... 384 e-106
sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related pr... 323 3e-88
sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related pr... 316 4e-86
>sp|Q99JY9|ARP3_MOUSE Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 416 bits (1068), Expect = e-116
Identities = 200/269 (74%), Positives = 227/269 (84%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DHYFLLTEPPLNTPENRE+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGT
Sbjct: 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGT 166
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTHVIPV +GYVIGS IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK
Sbjct: 167 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKA 226
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
+KERYSYVCPD+ KEF KYD+D KWIK + + +FS DVGYE+FLGPE+FF PE
Sbjct: 227 VKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGVNAISKKEFSIDVGYERFLGPEIFFHPE 286
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD R
Sbjct: 287 FANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDAR 346
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
LKL+EE S G+LKP PIDV+V++H MQRY
Sbjct: 347 LKLSEELSGGRLKPKPIDVQVITHHMQRY 375
>sp|P61157|ARP3_BOVIN Actin-like protein 3 (Actin-related protein 3) (Actin-2)
sp|P61158|ARP3_HUMAN Actin-like protein 3 (Actin-related protein 3)
sp|Q5R8R1|ARP3_PONPY Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 416 bits (1068), Expect = e-116
Identities = 200/269 (74%), Positives = 227/269 (84%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DHYFLLTEPPLNTPENRE+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGT
Sbjct: 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGT 166
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTHVIPV +GYVIGS IKHIPIAGRDIT+FIQQLLR+RE IPP+ S+E AK
Sbjct: 167 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKA 226
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
+KERYSYVCPD+ KEF KYD+D KWIK + + +FS DVGYE+FLGPE+FF PE
Sbjct: 227 VKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPE 286
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD R
Sbjct: 287 FANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDAR 346
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
LKL+EE S G+LKP PIDV+V++H MQRY
Sbjct: 347 LKLSEELSGGRLKPKPIDVQVITHHMQRY 375
>sp|O73723|ARP3_FUGRU Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 412 bits (1059), Expect = e-115
Identities = 198/269 (73%), Positives = 226/269 (84%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DHYFLLTEPPLNTPENRE+TAEIMFE+FNVPGLYIAVQAVLALAASWTSR ERTLTGT
Sbjct: 107 DHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGT 166
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTHVIPV +GYVIGS IKHIPIAGRDIT+F QQLLRERE IPP+ S+E AK
Sbjct: 167 VIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFTQQLLREREVGIPPEQSLETAKA 226
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
+KER+SYVCPD+ KEF KYD+D KWIK + + +F+ DVGYE+FLGPE+FF PE
Sbjct: 227 VKERFSYVCPDLVKEFNKYDTDGSKWIKQYTGINAITKKEFTIDVGYERFLGPEIFFHPE 286
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N DF IS+VVD VIQ+CPID RRPLY NIVLSGGS+MF+ RR+QRD+K+ VD R
Sbjct: 287 FANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDAR 346
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
LK++EE S GKLKP PIDV+V++H MQRY
Sbjct: 347 LKMSEELSGGKLKPKPIDVQVITHHMQRY 375
>sp|P32392|ARP3_DROME Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
66B) (Actin-2)
Length = 418
Score = 405 bits (1040), Expect = e-112
Identities = 193/269 (71%), Positives = 225/269 (83%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DHYFLLTEPPLNTPENRE+TAEIMFETFNVPGLYIAVQAVLALAASW SR A ERTLTG
Sbjct: 107 DHYFLLTEPPLNTPENREYTAEIMFETFNVPGLYIAVQAVLALAASWASRSAEERTLTGI 166
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
V+DSGDGVTHVIPV +GYVIGS IKHIPIAGR+IT FIQ LLRERE IPP+ S+E AK
Sbjct: 167 VVDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRNITSFIQSLLREREVGIPPEQSLETAKA 226
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
IKE++ Y+CPDIAKEFAKYD++P KWI++ + F+ DVGYE+FLGPE+FF PE
Sbjct: 227 IKEKHCYICPDIAKEFAKYDTEPGKWIRNFSGVNTVTKAPFNVDVGYERFLGPEIFFHPE 286
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N DF +S++VD VIQ+CPID RRPLYNNIVLSGGS+MFK RR+QRDIK+ VD R
Sbjct: 287 FSNPDFTIPLSEIVDNVIQNCPIDVRRPLYNNIVLSGGSTMFKDFGRRLQRDIKRSVDTR 346
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
L+++E S G++KP PIDV+V++H MQRY
Sbjct: 347 LRISENLSEGRIKPKPIDVQVITHHMQRY 375
>sp|P42528|ARP3_DICDI Actin-like protein 3 (Actin-related protein 3)
Length = 418
Score = 392 bits (1006), Expect = e-109
Identities = 190/278 (68%), Positives = 228/278 (82%)
Frame = +3
Query: 12 LKCSEQNQ*DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRP 191
L+C + DHYFLLTEPPLN PENREFTAEIMFETFNVPGLYIAVQAVLALAASWTS+
Sbjct: 102 LRCEPE---DHYFLLTEPPLNAPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSKN 158
Query: 192 ANERTLTGTVIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPP 371
A E+TLTGTVIDSGDGVTHVIP+ +GYVIGS+IKHIPIAGRDI+ ++QQ++RERE IPP
Sbjct: 159 A-EKTLTGTVIDSGDGVTHVIPISEGYVIGSSIKHIPIAGRDISSYVQQIMREREPNIPP 217
Query: 372 DMSMEAAKQIKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFL 551
S+E AK++KE+YSYVCPDI KEF KYDS+P+KWIK+ S FS+DVGYE+FL
Sbjct: 218 AESLEIAKRVKEQYSYVCPDIVKEFGKYDSEPDKWIKTINAQDSVTKKPFSYDVGYERFL 277
Query: 552 GPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQR 731
GPE+FF PE ++D+ T + VVD IQSCPID RR LY NIVLSGGS+MFK +R+QR
Sbjct: 278 GPELFFNPEIASSDYLTPLPKVVDDTIQSCPIDCRRGLYKNIVLSGGSTMFKDFGKRLQR 337
Query: 732 DIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
D+K+ VD+R+K +EE S GK+K P+ V V+SH+MQRY
Sbjct: 338 DVKRSVDYRIKRSEELSGGKIKAVPLAVNVISHNMQRY 375
>sp|Q61WW9|ARP3_CAEBR Actin-like protein 3 (Actin-related protein 3)
Length = 426
Score = 391 bits (1004), Expect = e-108
Identities = 187/269 (69%), Positives = 219/269 (81%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DH+FLLTEPPLNTPENRE+TAEIMFE+FNVPGLYIAVQAVLAL ASW SR A++R+LTG
Sbjct: 115 DHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWQSREASDRSLTGL 174
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTH IPV DGYVIGS IKHIPIAGRDIT+FIQ LLRERE IP + S E AK
Sbjct: 175 VIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQNLLREREHTIPAEQSYEVAKT 234
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
IKE++ YVCPD+ KEF KYD+D KW++++ S FS DVGYE+FLGPE+FF PE
Sbjct: 235 IKEKFCYVCPDVMKEFVKYDTDSSKWLRTYDGINSITKRPFSVDVGYERFLGPEIFFHPE 294
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N DF T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R++QRD+K++ D R
Sbjct: 295 FCNPDFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDAR 354
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
L+++E S G+LKP PIDV+V+SH MQRY
Sbjct: 355 LQMSETLSGGRLKPKPIDVQVISHKMQRY 383
>sp|Q9N4I0|ARP3_CAEEL Actin-like protein 3 (Actin-related protein 3)
Length = 425
Score = 390 bits (1003), Expect = e-108
Identities = 186/269 (69%), Positives = 219/269 (81%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DH+FLLTEPPLNTPENRE+TAEIMFE+FNVPGLYIAVQAVLAL ASW SR ANER+LTG
Sbjct: 114 DHFFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALTASWNSREANERSLTGL 173
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTH IPV DGYVIGS IKHIPIAGRDIT+FIQ LLR+RE IP + S E AK
Sbjct: 174 VIDSGDGVTHCIPVADGYVIGSCIKHIPIAGRDITYFIQSLLRDREHTIPAEQSYEVAKM 233
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
IKE++ YVCPD+ KEF KYD+D KW++++ S F+ DVGYE+FLGPE+FF PE
Sbjct: 234 IKEKFCYVCPDVMKEFVKYDTDAAKWLRTYDGINSITKKPFNVDVGYERFLGPEIFFHPE 293
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
F N +F T ISD +DT+IQ CPID RR LY NIVLSGGS+MFK R++QRD+K++ D R
Sbjct: 294 FCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKRLSDGR 353
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
L+++E S G+LKP PIDV+V+SH MQRY
Sbjct: 354 LQMSETLSGGRLKPKPIDVQVISHKMQRY 382
>sp|P53490|ARP3_ACACA Actin-like protein 3 (Actin-related protein 3)
Length = 427
Score = 384 bits (987), Expect = e-106
Identities = 185/278 (66%), Positives = 225/278 (80%)
Frame = +3
Query: 12 LKCSEQNQ*DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRP 191
L+C + DH+FLLTEPPLN PENRE+TAEIMFETFNVPGLYIAVQAVLALAASWTS+
Sbjct: 109 LRCEPE---DHHFLLTEPPLNAPENREYTAEIMFETFNVPGLYIAVQAVLALAASWTSKQ 165
Query: 192 ANERTLTGTVIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPP 371
E+TLTGTVIDSGDGVTHVIPV +GYVIGS+IKHIP+AGRDIT F+ QLLRER IPP
Sbjct: 166 VTEKTLTGTVIDSGDGVTHVIPVAEGYVIGSSIKHIPLAGRDITNFVLQLLRERNEKIPP 225
Query: 372 DMSMEAAKQIKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFL 551
++E AK+IKE +SYVCPDI KEF KYD++P+KW K+++ S ++ DVGYE+FL
Sbjct: 226 AETLEVAKRIKETFSYVCPDIVKEFKKYDTEPDKWFKTYEGIESVGKKPYNVDVGYERFL 285
Query: 552 GPEVFFRPEFVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQR 731
GPE+FF PE ++DF T + VVD IQSCPID+RR LY NIVLSGGS+MFK +R+QR
Sbjct: 286 GPEIFFNPEIFSSDFLTPLPKVVDETIQSCPIDTRRGLYKNIVLSGGSTMFKDFGKRLQR 345
Query: 732 DIKKMVDFRLKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
DIK+ VD+R+K +EE S G++K +DVKV+SH MQR+
Sbjct: 346 DIKRAVDYRIKRSEELSQGRIKSKAVDVKVISHHMQRF 383
>sp|P78712|ARP3_NEUCR Actin-like protein 3 (Actin-related protein 3)
Length = 439
Score = 323 bits (829), Expect = 3e-88
Identities = 166/269 (61%), Positives = 203/269 (75%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DH+FLLTEPPLN PENRE TAEI FE+FN GLYIAVQAVLALAASWTS +R+LTGT
Sbjct: 132 DHHFLLTEPPLNPPENRENTAEIFFESFNCAGLYIAVQAVLALAASWTSSKVQDRSLTGT 191
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTHVIPV +GYVIGS+IK IPIAGRDIT+F+Q LLR+R PD S++ A++
Sbjct: 192 VIDSGDGVTHVIPVAEGYVIGSSIKSIPIAGRDITYFVQSLLRDRG---EPDSSLKTAQE 248
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
IKE Y YVCPDI KEFAKYD D +++K + + DVGYE+F+ PE+FF PE
Sbjct: 249 IKEEYCYVCPDIVKEFAKYDRDRSRFLKHTITQPGGR--QVTVDVGYERFMAPEIFFNPE 306
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
++DF T + VVD VIQS PID RR LY NIVLSGGS+++K RR+QRDIK++VD R
Sbjct: 307 IYSSDFLTPLPVVVDGVIQSSPIDVRRGLYKNIVLSGGSTLYKDFGRRLQRDIKQLVDTR 366
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQRY 845
+K +E S G K +DV+V++H QR+
Sbjct: 367 IKASEVRS-GGAKSGGLDVQVITHKRQRH 394
>sp|P47117|ARP3_YEAST Actin-like protein 3 (Actin-related protein 3) (Actin-like protein
ARP3)
Length = 449
Score = 316 bits (810), Expect = 4e-86
Identities = 165/268 (61%), Positives = 196/268 (73%)
Frame = +3
Query: 39 DHYFLLTEPPLNTPENREFTAEIMFETFNVPGLYIAVQAVLALAASWTSRPANERTLTGT 218
DH+FLLTEPPLN PENRE AEI FE+FN GLYIAVQAVLALAASWTS +R+LTGT
Sbjct: 145 DHFFLLTEPPLNPPENREQVAEIFFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT 204
Query: 219 VIDSGDGVTHVIPVVDGYVIGSAIKHIPIAGRDITFFIQQLLRERETVIPPDMSMEAAKQ 398
VIDSGDGVTHVIPV +GYVIGSAIK+IPIAGRDIT FIQ LLRER D S+ A++
Sbjct: 205 VIDSGDGVTHVIPVAEGYVIGSAIKNIPIAGRDITLFIQSLLRERGEA---DTSLRTAEK 261
Query: 399 IKERYSYVCPDIAKEFAKYDSDPEKWIKSHKMSGSAKYPDFSFDVGYEKFLGPEVFFRPE 578
IK+ Y YVCPDI KEF K+D DP K+ + + K D+GYE+FL PE+FF PE
Sbjct: 262 IKQEYCYVCPDIVKEFNKFDKDPSKFAQ-FVVENQEKTRRKVVDIGYERFLAPEIFFNPE 320
Query: 579 FVNADFQTSISDVVDTVIQSCPIDSRRPLYNNIVLSGGSSMFKHLDRRIQRDIKKMVDFR 758
++DF T + VVD IQ+CPID R+ LYNNIVLSGGS+MFK RR+QRD+K +V+ R
Sbjct: 321 IASSDFLTPLPTVVDQTIQACPIDVRKGLYNNIVLSGGSTMFKDFGRRLQRDLKSIVNNR 380
Query: 759 LKLTEENSHGKLKPTPIDVKVVSHSMQR 842
+ +E S K T +DV V+SH QR
Sbjct: 381 IAQSELLS--GTKSTGVDVSVISHRKQR 406
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,118,179
Number of Sequences: 369166
Number of extensions: 2286984
Number of successful extensions: 8067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7231
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)