Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B11
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 107 3e-23
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 107 3e-23
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 91 3e-18
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 91 4e-18
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 86 1e-16
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 86 1e-16
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 85 2e-16
sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type ... 83 7e-16
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 83 9e-16
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 82 1e-15
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 107 bits (268), Expect = 3e-23
Identities = 63/152 (41%), Positives = 83/152 (54%), Gaps = 4/152 (2%)
Frame = +2
Query: 5 KDVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGEN 178
K N LK HN+ RA H VP L L L + AQ+Y++ LA T HS S G+ GEN
Sbjct: 7 KQFNNEVLKAHNEYRAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGEN 66
Query: 179 LASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRA 358
LA + Y TG WY EIK Y F + +G GHF+ +VWK+TK G G+A
Sbjct: 67 LAWA-----SYDQTGKDVADRWYSEIKSYNFQQPGFTSGT-GHFTAMVWKNTKKIGVGKA 120
Query: 359 KCSNGNFIIVGQYKPPGNFL--GKFKENILSP 448
S+G+ +V +Y P GN + G F+EN+ P
Sbjct: 121 SASDGSSFVVARYFPAGNIVNQGFFEENVPPP 152
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 107 bits (268), Expect = 3e-23
Identities = 62/152 (40%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Frame = +2
Query: 5 KDVNETALKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHS--KSEGKYGEN 178
K + LK HN+ R H VP L L +L + AQ+Y++ LA T HS S G+ GEN
Sbjct: 7 KQFHNEVLKAHNEYRQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGEN 66
Query: 179 LASSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRA 358
LA + Y TG WY EIK+Y F + +G GHF+ +VWK+TK G G+A
Sbjct: 67 LAWA-----SYDQTGKEVADRWYSEIKNYNFQQPGFTSGT-GHFTAMVWKNTKKMGVGKA 120
Query: 359 KCSNGNFIIVGQYKPPGNFL--GKFKENILSP 448
S+G+ +V +Y P GN + G F+EN+L P
Sbjct: 121 SASDGSSFVVARYFPAGNVVNEGFFEENVLPP 152
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 90.9 bits (224), Expect = 3e-18
Identities = 61/141 (43%), Positives = 72/141 (51%), Gaps = 3/141 (2%)
Frame = +2
Query: 26 LKHHNKLRALHRVPNLTLDWD--LAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNS 199
L HNK RALH V L W LA AQ YAD+ + +HS +G YGENLA
Sbjct: 30 LNEHNKFRALH-VDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLAL---- 82
Query: 200 KPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC-SNGN 376
GY TG A WY EI Y ++ GHF+QVVWK T G G C + N
Sbjct: 83 --GYTDTG--AVDAWYGEISKYNYSNPGFSEST-GHFTQVVWKSTAEIGCGYKYCGTTWN 137
Query: 377 FIIVGQYKPPGNFLGKFKENI 439
IV Y PPGN+LG+F E +
Sbjct: 138 NYIVCSYNPPGNYLGEFAEEV 158
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 90.5 bits (223), Expect = 4e-18
Identities = 56/147 (38%), Positives = 78/147 (53%), Gaps = 3/147 (2%)
Frame = +2
Query: 8 DVNETALKHHNKLRALHR-VPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLA 184
D + L HNK RALH+ P L+ LA AQ+YAD + + +HS G YGENLA
Sbjct: 161 DFASSVLAEHNKKRALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHSG--GPYGENLA 218
Query: 185 SSFNSKPGYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKC 364
++ G AA WY+EI +Y F+ + GHF+QVVWK T G G C
Sbjct: 219 LGYD--------GPAAVDAWYNEISNYDFSNPGFSSNT-GHFTQVVWKSTTQVGCGIKTC 269
Query: 365 SN--GNFIIVGQYKPPGNFLGKFKENI 439
G+++I Y P GN+ G++ +N+
Sbjct: 270 GGAWGDYVIC-SYDPAGNYEGEYADNV 295
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 85.9 bits (211), Expect = 1e-16
Identities = 50/134 (37%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +2
Query: 26 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 205
L HN RA V LT D +A AQ YA +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----S 91
Query: 206 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 382
G T A + W DE + Y + G++ GH++QVVW+++ G R +C+NG ++
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYV 151
Query: 383 IVGQYKPPGNFLGK 424
+ Y PPGN+ G+
Sbjct: 152 VSCNYDPPGNYRGE 165
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 85.5 bits (210), Expect = 1e-16
Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Frame = +2
Query: 26 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 205
L HN RA V LT D +A AQ Y +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----S 91
Query: 206 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 382
G T A + W DE + Y + G++ GH++QVVW+++ G R KC+NG ++
Sbjct: 92 GDFMTAAKAVEMWVDEKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYV 151
Query: 383 IVGQYKPPGNFLGK 424
+ Y PPGN +G+
Sbjct: 152 VSCNYDPPGNVIGQ 165
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 84.7 bits (208), Expect = 2e-16
Identities = 51/134 (38%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Frame = +2
Query: 26 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 205
L HN RA V LT D +A AQ YA +LA + HS G+YGENLA
Sbjct: 38 LDAHNTARADVGVEPLTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----S 91
Query: 206 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFI 382
G T A + W +E + Y + G++ GH++QVVW+++ G R +C+NG +I
Sbjct: 92 GDFLTAAKAVEMWVNEKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYI 151
Query: 383 IVGQYKPPGNFLGK 424
+ Y PPGN +GK
Sbjct: 152 VSCNYDPPGNVIGK 165
>sp|Q41359|PR1_SAMNI Pathogenesis-related protein PR-1 type precursor
Length = 167
Score = 83.2 bits (204), Expect = 7e-16
Identities = 50/131 (38%), Positives = 69/131 (52%), Gaps = 1/131 (0%)
Frame = +2
Query: 35 HNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 214
HN R+ V +T D +A A++YA A HS + +YGENLA F S G+
Sbjct: 39 HNAARSAVNVGPVTWDESVAAFARQYAQSRAGDCRLVHS-GDPRYGENLA--FGS--GFE 93
Query: 215 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 391
TG A W E DY N GK+ GH++QVVW+++ G R +C+NG + I
Sbjct: 94 LTGRNAVDMWVAERNDYNPNTNTCAPGKVCGHYTQVVWRNSVRIGCARVRCNNGAWFITC 153
Query: 392 QYKPPGNFLGK 424
Y PPGN+ G+
Sbjct: 154 NYSPPGNYAGQ 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 82.8 bits (203), Expect = 9e-16
Identities = 53/131 (40%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Frame = +2
Query: 35 HNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKPGYI 214
HN RA V ++ D +LA AQ YA+ A + HS + GENLA K G
Sbjct: 35 HNDARAQVGVGPMSWDANLASRAQNYANSRAGDCNLIHSGA----GENLA-----KGGGD 85
Query: 215 FTGDAATQNWYDEIKDYKFNEEAQQTGKI-GHFSQVVWKDTKLCGFGRAKCSNGNFIIVG 391
FTG AA Q W E DY + GK+ GH++QVVW+++ G GRA+C+NG + I
Sbjct: 86 FTGRAAVQLWVSERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISC 145
Query: 392 QYKPPGNFLGK 424
Y P GN++G+
Sbjct: 146 NYDPVGNWVGE 156
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 82.4 bits (202), Expect = 1e-15
Identities = 49/133 (36%), Positives = 67/133 (50%)
Frame = +2
Query: 26 LKHHNKLRALHRVPNLTLDWDLAKSAQEYADKLAKTNSFSHSKSEGKYGENLASSFNSKP 205
L HN R V +T D LA AQ YA++ HS G YGENLA++F
Sbjct: 31 LNPHNAARRQVGVGPMTWDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-- 86
Query: 206 GYIFTGDAATQNWYDEIKDYKFNEEAQQTGKIGHFSQVVWKDTKLCGFGRAKCSNGNFII 385
A + W DE + Y +N + G GH++QVVW+++ G R + +NG F I
Sbjct: 87 ---LNAAGAVKMWVDEKRFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFI 143
Query: 386 VGQYKPPGNFLGK 424
Y PPGNF+G+
Sbjct: 144 TCNYDPPGNFIGQ 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,661,946
Number of Sequences: 369166
Number of extensions: 1618306
Number of successful extensions: 4553
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4465
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)