Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B06
(391 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08547|LIN1_HUMAN LINE-1 reverse transcriptase homolog 28 4.9
sp|Q7NAQ9|TRUA_MYCGA tRNA pseudouridine synthase A (tRNA-ur... 28 8.4
>sp|P08547|LIN1_HUMAN LINE-1 reverse transcriptase homolog
Length = 1259
Score = 28.5 bits (62), Expect = 4.9
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +1
Query: 73 HLYNFIKF--LEIFNRW*RNRVWLKWCWFN 156
H+YN++ F E +W ++ ++ KWCW N
Sbjct: 909 HIYNYLIFDKPEKNKQWGKDSLFNKWCWEN 938
>sp|Q7NAQ9|TRUA_MYCGA tRNA pseudouridine synthase A (tRNA-uridine isomerase I) (tRNA
pseudouridylate synthase I)
Length = 262
Score = 27.7 bits (60), Expect = 8.4
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 46 NEILLIYYDHLYNFIKFLEIFNRW*RNRVWLKW 144
N+ + Y D + K EI NR+ +N+ ++KW
Sbjct: 79 NQYISFYIDDRISLEKLREILNRYGQNKWYIKW 111
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,580,757
Number of Sequences: 369166
Number of extensions: 406754
Number of successful extensions: 741
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1670473860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)