Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A17
(470 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa... 190 1e-48
sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 189 4e-48
sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 188 5e-48
sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 188 5e-48
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 188 6e-48
sp|P35133|UBCA_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 187 8e-48
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 186 2e-47
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 184 7e-47
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 184 9e-47
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 182 3e-46
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 190 bits (483), Expect = 1e-48
Identities = 88/114 (77%), Positives = 95/114 (83%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP DSPY GG+F +SI FPPDYPFKPP V F TK+FHPNINSNGSICLDILK Q
Sbjct: 33 WQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLL DPN DDPL A++YK DR K++ TARSWT KYA
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 146
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
11) (Ubiquitin carrier protein 11)
Length = 148
Score = 189 bits (479), Expect = 4e-48
Identities = 86/114 (75%), Positives = 95/114 (83%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP +SPY GG+F +SI FPPDYPFKPP V F TK++HPNINSNGSICLDILK Q
Sbjct: 33 WQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLL DPN DDPL A++YK DR K++ TARSWT KYA
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYA 146
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
8) (Ubiquitin carrier protein 8) (UBCAT4A)
Length = 148
Score = 188 bits (478), Expect = 5e-48
Identities = 86/114 (75%), Positives = 96/114 (84%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGPA+SPY GG+F ++I FPPDYPFKPP V F TK+FHPNINSNGSICLDILK Q
Sbjct: 33 WQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLL DPN DDPL A++YK DR K++ TAR+WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYA 146
>sp|P35132|UBC9_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 9 (Ubiquitin-protein ligase
9) (Ubiquitin carrier protein 9) (UBCAT4B)
Length = 148
Score = 188 bits (478), Expect = 5e-48
Identities = 85/114 (74%), Positives = 96/114 (84%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP+DSPY GG+F ++I FPPDYPFKPP V F TK+FHPNINSNGSICLDILK Q
Sbjct: 33 WQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLL DPN DDPL A++YK D+ K++ TAR+WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYA 146
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 188 bits (477), Expect = 6e-48
Identities = 85/114 (74%), Positives = 95/114 (83%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP DSPY+GG+F L+I FP DYPFKPP V F T+I+HPNINSNGSICLDIL+ Q
Sbjct: 33 WQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLLCDPN DDPL A +YK DR+K++E AR WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYA 146
>sp|P35133|UBCA_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 10/12 (Ubiquitin-protein
ligase 10/12) (Ubiquitin carrier protein 10/12)
Length = 148
Score = 187 bits (476), Expect = 8e-48
Identities = 85/114 (74%), Positives = 96/114 (84%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP++SPY GG+F ++I FPPDYPFKPP V F TK+FHPNINSNGSICLDILK Q
Sbjct: 33 WQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLL DPN DDPL A++YK D+ K++ TARSWT KYA
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYA 146
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 186 bits (472), Expect = 2e-47
Identities = 84/114 (73%), Positives = 94/114 (82%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP DSPY+GG+F L+I FP DYPFKPP V F T+I+HPNINSNGSICLDIL+ Q
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLLCDPN DDPL A +YK DR+K++ AR WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYA 146
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 184 bits (468), Expect = 7e-47
Identities = 82/114 (71%), Positives = 95/114 (83%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP +SPY+GG+F L+I FP DYPFKPP V F T+I+HPNINSNGSICLDIL+ Q
Sbjct: 33 WQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLLCDPN DDPL A +YK DR+++++ AR WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA 146
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 184 bits (467), Expect = 9e-47
Identities = 83/114 (72%), Positives = 93/114 (81%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP DSPY+GG+F L+I FP DYPFKPP V F T+I+HPNINSNGSICLDIL+ Q
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALTISKVLLSICSLLCDPN DDPL A +YK DR K++ +R WT KYA
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 182 bits (463), Expect = 3e-46
Identities = 80/114 (70%), Positives = 94/114 (82%)
Frame = +3
Query: 24 WAATIMGPADSPYEGGIFSLSIEFPPDYPFKPPMVKFDTKIFHPNINSNGSICLDILKGQ 203
W ATIMGP DS Y+GG+F L++ FP DYPFKPP + F TKI+HPNINSNGSICLDIL+ Q
Sbjct: 33 WQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ 92
Query: 204 WSPALTISKVLLSICSLLCDPNADDPLDSNAANLYKKDRKKFDETARSWTMKYA 365
WSPALT+SKVLLSICSLLCDPN DDPL + A +YK D++K++ AR WT KYA
Sbjct: 93 WSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYA 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,972,080
Number of Sequences: 369166
Number of extensions: 1007729
Number of successful extensions: 2725
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2671
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)