Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A15
(462 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 61 1e-09
sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 61 1e-09
sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-lik... 61 1e-09
sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-lik... 61 1e-09
sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromo... 35 0.062
sp|P41474|Y084_NPVAC HYPOTHETICAL 21.7 KD PROTEIN IN GP41-P... 31 1.2
sp|Q7TNR9|ARHG4_MOUSE Rho guanine nucleotide exchange facto... 30 2.6
sp|P90837|SRE32_CAEEL Serpentine receptor class epsilon-32 ... 29 4.5
>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1
Length = 371
Score = 60.8 bits (146), Expect = 1e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +1
Query: 1 LGIQDNDRRLADHFGGKLHLGFINLRIRLNEIQKYLNDKSDR 126
LG+ DNDRRLADHFGGKLHLGFI +R +L++++K + +K ++
Sbjct: 197 LGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEK 238
>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2
Length = 392
Score = 60.8 bits (146), Expect = 1e-09
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +1
Query: 1 LGIQDNDRRLADHFGGKLHLGFINLRIRLNEIQKYLNDKSDR 126
LG+ DNDRRLADHFGGKLHLGFI +R +L E+++ + +K ++
Sbjct: 197 LGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEK 238
>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 (SR+89) (Putative SR
protein LUC7B1)
Length = 371
Score = 60.8 bits (146), Expect = 1e-09
Identities = 25/42 (59%), Positives = 36/42 (85%)
Frame = +1
Query: 1 LGIQDNDRRLADHFGGKLHLGFINLRIRLNEIQKYLNDKSDR 126
LG+ DNDRRLADHFGGKLHLGFI +R +L++++K + +K ++
Sbjct: 197 LGLHDNDRRLADHFGGKLHLGFIQIREKLDQLRKTVAEKQEK 238
>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 (CGI-74 homolog)
Length = 392
Score = 60.8 bits (146), Expect = 1e-09
Identities = 25/42 (59%), Positives = 35/42 (83%)
Frame = +1
Query: 1 LGIQDNDRRLADHFGGKLHLGFINLRIRLNEIQKYLNDKSDR 126
LG+ DNDRRLADHFGGKLHLGFI +R +L E+++ + +K ++
Sbjct: 197 LGLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEK 238
>sp|Q09217|YP68_CAEEL Hypothetical protein B0495.8 in chromosome II
Length = 313
Score = 35.4 bits (80), Expect = 0.062
Identities = 12/39 (30%), Positives = 27/39 (69%)
Frame = +1
Query: 1 LGIQDNDRRLADHFGGKLHLGFINLRIRLNEIQKYLNDK 117
L I D++ R+ADH+ GK+H+G + R ++++ ++++
Sbjct: 198 LNITDHESRIADHYNGKMHIGMVETRETYLKMKETIDER 236
>sp|P41474|Y084_NPVAC HYPOTHETICAL 21.7 KD PROTEIN IN GP41-PNK INTERGENIC REGION
Length = 188
Score = 31.2 bits (69), Expect = 1.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 190 DCDLYFLICPVFYRANLEIVYFCLICHLNIFE 95
+CD ++ ++NL I YFC+IC LN+F+
Sbjct: 154 NCDRGHVVEEKQLQSNLYIDYFCMICGLNVFK 185
>sp|Q7TNR9|ARHG4_MOUSE Rho guanine nucleotide exchange factor 4 (APC-stimulated guanine
nucleotide exchange factor) (Asef)
Length = 484
Score = 30.0 bits (66), Expect = 2.6
Identities = 10/44 (22%), Positives = 29/44 (65%)
Frame = +2
Query: 65 LLI*ESDLMKFKNI*MTNQTEIDDLQICPIKDGTDQEVEIAIEN 196
L+ + DL++ + + ++DDL++ ++DG D+++ ++++N
Sbjct: 322 LIYCKKDLLRRDVLYYKGRLDMDDLEVVDVEDGKDRDLHVSVKN 365
>sp|P90837|SRE32_CAEEL Serpentine receptor class epsilon-32 (Protein sre-32)
Length = 361
Score = 29.3 bits (64), Expect = 4.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -3
Query: 235 NFLEIVSCLSDFHIFDCDLYFLICPVFYRANLEIVYFCLIC 113
+ +E+V +S FH+ LY ++ + NL I+Y + C
Sbjct: 33 SIIELVFYISCFHLMTISLYVMLKVQIFHRNLYILYIPMFC 73
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,490,695
Number of Sequences: 369166
Number of extensions: 594533
Number of successful extensions: 1123
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1123
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)