Planarian EST Database


Dr_sW_002_A08

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_002_A08
         (769 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62433|NDRG1_MOUSE  NDRG1 protein (N-myc downstream regul...    76   1e-13
sp|Q92597|NDRG1_HUMAN  NDRG1 protein (N-myc downstream regul...    74   6e-13
sp|O02485|YDJ1_CAEEL  Hypothetical protein ZK1073.1 in chrom...    63   8e-10
sp|Q9R0B6|LAMC3_MOUSE  Laminin gamma-3 chain precursor (Lami...    34   0.50 
sp|P52736|ZN133_HUMAN  Zinc finger protein 133                     33   1.1  
sp|Q92GL5|RNH_RICCN  Ribonuclease HI (RNase HI)                    33   1.1  
sp|P43807|RNH_HAEIN  Ribonuclease HI (RNase HI)                    32   2.5  
sp|Q8XBJ0|YFEW_ECO57  Hypothetical UPF0214 protein yfeW prec...    32   2.5  
sp|P77619|YFEW_ECOLI  Hypothetical UPF0214 protein yfeW prec...    32   2.5  
sp|Q12667|XYNA_PIRSP  Endo-1,4-beta-xylanase A precursor (1,...    31   3.2  
>sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regulated gene 1 protein) (Protein
           Ndr1)
          Length = 394

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
 Frame = +2

Query: 5   PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181
           P  + GL LMN +    G+  W  +        K    T  + + ++ H FG      N+
Sbjct: 154 PEMVEGLVLMNVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEIHNNV 205

Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
           ++ H+Y Q +L ++NP  +  +I +Y +R  L + RP+    T+T TL+  A LV G+ +
Sbjct: 206 EVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDNS 263

Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
             +  A+VE N  +DPTKT  + + D  G      P KL+  F  +++ +G M + +  +
Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322

Query: 539 LQRA 550
           L R+
Sbjct: 323 LMRS 326
>sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regulated gene 1 protein)
           (Differentiation-related gene 1 protein) (DRG1)
           (Reducing agents and tunicamycin-responsive protein)
           (RTP) (Nickel-specific induction protein Cap43) (Rit42)
          Length = 394

 Score = 73.6 bits (179), Expect = 6e-13
 Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
 Frame = +2

Query: 5   PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181
           P  + GL L+N +    G+  W  +        K    T  + + ++ H FG    + N+
Sbjct: 154 PEMVEGLVLINVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEMQSNV 205

Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
           ++ H+Y Q ++ ++NP  +  +I +Y +R  L + RP+    T+T TL+  A LV G+ +
Sbjct: 206 EVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDSS 263

Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
             +  A+VE N  +DPTKT  + + D  G      P KL+  F  +++ +G M + +  +
Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322

Query: 539 LQRA 550
           L R+
Sbjct: 323 LMRS 326
>sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X
          Length = 325

 Score = 63.2 bits (152), Expect = 8e-10
 Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 1/183 (0%)
 Frame = +2

Query: 2   YPNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTERNM 181
           +PN+++G+ L++   TT G   + +    ++  L++ +++D   ++LL H FG  ++   
Sbjct: 127 HPNRIMGIVLVHCTSTTAGIIEYCKEKVMNMR-LENSIMSDGAWDYLLAHKFGGESKSRQ 185

Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
           +    YL+ L   LNP  ++ Y+ ++  RT L  T         T    VDA LVTG  A
Sbjct: 186 E----YLEELKATLNPKNLSKYLVAFTKRTDLSST-------IGTKLETVDALLVTGSKA 234

Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
           + L   +   + +M+  KT  + V+D    VM E PDKL+   +   +  G++  V    
Sbjct: 235 SHL-HTVYTTHKSMNKKKTTLL-VVDNVADVMQEAPDKLARSLILLCKGCGVLSGVAIPG 292

Query: 539 LQR 547
           ++R
Sbjct: 293 MER 295
>sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit)
          Length = 1581

 Score = 33.9 bits (76), Expect = 0.50
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = -3

Query: 371 EINLWPFLPLLEMHPPSTW--TCLCPKN*SGESYQEQCDSCKIQYNQPL 231
           E+ L    P  E+ PP++W  TCLCP+  +G+     C+ C + Y + +
Sbjct: 663 EVQLTSAWPQRELAPPASWVETCLCPQGYTGQF----CEFCALGYKREI 707
>sp|P52736|ZN133_HUMAN Zinc finger protein 133
          Length = 654

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 416 ESWWDPYCHSFPPSLEINLWPFLPLLEMHPPSTWTCLC 303
           E + DP+C   PP      +P   +L  HPP  +TCLC
Sbjct: 78  ELYLDPFC---PPGFSSQKFPMQHVLCNHPPWIFTCLC 112
>sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI)
          Length = 152

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +2

Query: 80  IWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187
           I++D  YL+ G+ T WI NW+ ++W  S  E  +N DL
Sbjct: 67  IYTDSKYLQQGI-TAWIHNWIKNNWCKSNNEPVKNADL 103
>sp|P43807|RNH_HAEIN Ribonuclease HI (RNase HI)
          Length = 154

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +2

Query: 65  PWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187
           P    ++SD  Y+K+G+ T WI NW  ++W  S  +  +N DL
Sbjct: 62  PCLITLYSDSQYMKNGI-TKWIFNWKKNNWKASSGKPVKNQDL 103
>sp|Q8XBJ0|YFEW_ECO57 Hypothetical UPF0214 protein yfeW precursor
          Length = 434

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
 Frame = +2

Query: 2   YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154
           YPNK +   L + D          T   Y P ++ I+SD+ Y+  G + + +    LD +
Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226

Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238
                 R + L H+ +  LL    P  +A
Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|P77619|YFEW_ECOLI Hypothetical UPF0214 protein yfeW precursor
          Length = 434

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
 Frame = +2

Query: 2   YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154
           YPNK +   L + D          T   Y P ++ I+SD+ Y+  G + + +    LD +
Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226

Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238
                 R + L H+ +  LL    P  +A
Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|Q12667|XYNA_PIRSP Endo-1,4-beta-xylanase A precursor (1,4-beta-D-xylan
           xylanohydrolase) (Xylanase A) (XYLA)
          Length = 625

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 11  KLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGS 163
           KL+   + N D +  G Y WTR      P ++  VV +W+  W    W G+
Sbjct: 484 KLVKQNIQNVDYSYVGIYGWTRN-----PLVEFYVVDNWLSQWRPGDWVGN 529
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,440,738
Number of Sequences: 369166
Number of extensions: 2094409
Number of successful extensions: 5595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5591
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)