Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A08
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regul... 76 1e-13
sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regul... 74 6e-13
sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chrom... 63 8e-10
sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Lami... 34 0.50
sp|P52736|ZN133_HUMAN Zinc finger protein 133 33 1.1
sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI) 33 1.1
sp|P43807|RNH_HAEIN Ribonuclease HI (RNase HI) 32 2.5
sp|Q8XBJ0|YFEW_ECO57 Hypothetical UPF0214 protein yfeW prec... 32 2.5
sp|P77619|YFEW_ECOLI Hypothetical UPF0214 protein yfeW prec... 32 2.5
sp|Q12667|XYNA_PIRSP Endo-1,4-beta-xylanase A precursor (1,... 31 3.2
>sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regulated gene 1 protein) (Protein
Ndr1)
Length = 394
Score = 75.9 bits (185), Expect = 1e-13
Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 2/184 (1%)
Frame = +2
Query: 5 PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181
P + GL LMN + G+ W + K T + + ++ H FG N+
Sbjct: 154 PEMVEGLVLMNVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEIHNNV 205
Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
++ H+Y Q +L ++NP + +I +Y +R L + RP+ T+T TL+ A LV G+ +
Sbjct: 206 EVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDNS 263
Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
+ A+VE N +DPTKT + + D G P KL+ F +++ +G M + + +
Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322
Query: 539 LQRA 550
L R+
Sbjct: 323 LMRS 326
>sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regulated gene 1 protein)
(Differentiation-related gene 1 protein) (DRG1)
(Reducing agents and tunicamycin-responsive protein)
(RTP) (Nickel-specific induction protein Cap43) (Rit42)
Length = 394
Score = 73.6 bits (179), Expect = 6e-13
Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 2/184 (1%)
Frame = +2
Query: 5 PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181
P + GL L+N + G+ W + K T + + ++ H FG + N+
Sbjct: 154 PEMVEGLVLINVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEMQSNV 205
Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
++ H+Y Q ++ ++NP + +I +Y +R L + RP+ T+T TL+ A LV G+ +
Sbjct: 206 EVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDSS 263
Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
+ A+VE N +DPTKT + + D G P KL+ F +++ +G M + + +
Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322
Query: 539 LQRA 550
L R+
Sbjct: 323 LMRS 326
>sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X
Length = 325
Score = 63.2 bits (152), Expect = 8e-10
Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 1/183 (0%)
Frame = +2
Query: 2 YPNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTERNM 181
+PN+++G+ L++ TT G + + ++ L++ +++D ++LL H FG ++
Sbjct: 127 HPNRIMGIVLVHCTSTTAGIIEYCKEKVMNMR-LENSIMSDGAWDYLLAHKFGGESKSRQ 185
Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358
+ YL+ L LNP ++ Y+ ++ RT L T T VDA LVTG A
Sbjct: 186 E----YLEELKATLNPKNLSKYLVAFTKRTDLSST-------IGTKLETVDALLVTGSKA 234
Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538
+ L + + +M+ KT + V+D VM E PDKL+ + + G++ V
Sbjct: 235 SHL-HTVYTTHKSMNKKKTTLL-VVDNVADVMQEAPDKLARSLILLCKGCGVLSGVAIPG 292
Query: 539 LQR 547
++R
Sbjct: 293 MER 295
>sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit)
Length = 1581
Score = 33.9 bits (76), Expect = 0.50
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 371 EINLWPFLPLLEMHPPSTW--TCLCPKN*SGESYQEQCDSCKIQYNQPL 231
E+ L P E+ PP++W TCLCP+ +G+ C+ C + Y + +
Sbjct: 663 EVQLTSAWPQRELAPPASWVETCLCPQGYTGQF----CEFCALGYKREI 707
>sp|P52736|ZN133_HUMAN Zinc finger protein 133
Length = 654
Score = 32.7 bits (73), Expect = 1.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 416 ESWWDPYCHSFPPSLEINLWPFLPLLEMHPPSTWTCLC 303
E + DP+C PP +P +L HPP +TCLC
Sbjct: 78 ELYLDPFC---PPGFSSQKFPMQHVLCNHPPWIFTCLC 112
>sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI)
Length = 152
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +2
Query: 80 IWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187
I++D YL+ G+ T WI NW+ ++W S E +N DL
Sbjct: 67 IYTDSKYLQQGI-TAWIHNWIKNNWCKSNNEPVKNADL 103
>sp|P43807|RNH_HAEIN Ribonuclease HI (RNase HI)
Length = 154
Score = 31.6 bits (70), Expect = 2.5
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 65 PWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187
P ++SD Y+K+G+ T WI NW ++W S + +N DL
Sbjct: 62 PCLITLYSDSQYMKNGI-TKWIFNWKKNNWKASSGKPVKNQDL 103
>sp|Q8XBJ0|YFEW_ECO57 Hypothetical UPF0214 protein yfeW precursor
Length = 434
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Frame = +2
Query: 2 YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154
YPNK + L + D T Y P ++ I+SD+ Y+ G + + + LD +
Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226
Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238
R + L H+ + LL P +A
Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|P77619|YFEW_ECOLI Hypothetical UPF0214 protein yfeW precursor
Length = 434
Score = 31.6 bits (70), Expect = 2.5
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%)
Frame = +2
Query: 2 YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154
YPNK + L + D T Y P ++ I+SD+ Y+ G + + + LD +
Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226
Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238
R + L H+ + LL P +A
Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|Q12667|XYNA_PIRSP Endo-1,4-beta-xylanase A precursor (1,4-beta-D-xylan
xylanohydrolase) (Xylanase A) (XYLA)
Length = 625
Score = 31.2 bits (69), Expect = 3.2
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 11 KLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGS 163
KL+ + N D + G Y WTR P ++ VV +W+ W W G+
Sbjct: 484 KLVKQNIQNVDYSYVGIYGWTRN-----PLVEFYVVDNWLSQWRPGDWVGN 529
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,440,738
Number of Sequences: 369166
Number of extensions: 2094409
Number of successful extensions: 5595
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5591
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)