Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_002_A08 (769 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regul... 76 1e-13 sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regul... 74 6e-13 sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chrom... 63 8e-10 sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Lami... 34 0.50 sp|P52736|ZN133_HUMAN Zinc finger protein 133 33 1.1 sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI) 33 1.1 sp|P43807|RNH_HAEIN Ribonuclease HI (RNase HI) 32 2.5 sp|Q8XBJ0|YFEW_ECO57 Hypothetical UPF0214 protein yfeW prec... 32 2.5 sp|P77619|YFEW_ECOLI Hypothetical UPF0214 protein yfeW prec... 32 2.5 sp|Q12667|XYNA_PIRSP Endo-1,4-beta-xylanase A precursor (1,... 31 3.2
>sp|Q62433|NDRG1_MOUSE NDRG1 protein (N-myc downstream regulated gene 1 protein) (Protein Ndr1) Length = 394 Score = 75.9 bits (185), Expect = 1e-13 Identities = 53/184 (28%), Positives = 92/184 (50%), Gaps = 2/184 (1%) Frame = +2 Query: 5 PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181 P + GL LMN + G+ W + K T + + ++ H FG N+ Sbjct: 154 PEMVEGLVLMNVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEIHNNV 205 Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358 ++ H+Y Q +L ++NP + +I +Y +R L + RP+ T+T TL+ A LV G+ + Sbjct: 206 EVVHTYRQHILNDMNPSNLHLFISAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDNS 263 Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538 + A+VE N +DPTKT + + D G P KL+ F +++ +G M + + + Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322 Query: 539 LQRA 550 L R+ Sbjct: 323 LMRS 326
>sp|Q92597|NDRG1_HUMAN NDRG1 protein (N-myc downstream regulated gene 1 protein) (Differentiation-related gene 1 protein) (DRG1) (Reducing agents and tunicamycin-responsive protein) (RTP) (Nickel-specific induction protein Cap43) (Rit42) Length = 394 Score = 73.6 bits (179), Expect = 6e-13 Identities = 51/184 (27%), Positives = 93/184 (50%), Gaps = 2/184 (1%) Frame = +2 Query: 5 PNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCT-ERNM 181 P + GL L+N + G+ W + K T + + ++ H FG + N+ Sbjct: 154 PEMVEGLVLINVNPCAEGWMDWAAS--------KISGWTQALPDMVVSHLFGKEEMQSNV 205 Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358 ++ H+Y Q ++ ++NP + +I +Y +R L + RP+ T+T TL+ A LV G+ + Sbjct: 206 EVVHTYRQHIVNDMNPGNLHLFINAYNSRRDLEIERPMPG--THTVTLQCPALLVVGDSS 263 Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538 + A+VE N +DPTKT + + D G P KL+ F +++ +G M + + + Sbjct: 264 PAVD-AVVECNSKLDPTKTTLLKMADCGGLPQISQPAKLAEAFKYFVQGMGYMPSASMTR 322 Query: 539 LQRA 550 L R+ Sbjct: 323 LMRS 326
>sp|O02485|YDJ1_CAEEL Hypothetical protein ZK1073.1 in chromosome X Length = 325 Score = 63.2 bits (152), Expect = 8e-10 Identities = 50/183 (27%), Positives = 91/183 (49%), Gaps = 1/183 (0%) Frame = +2 Query: 2 YPNKLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTERNM 181 +PN+++G+ L++ TT G + + ++ L++ +++D ++LL H FG ++ Sbjct: 127 HPNRIMGIVLVHCTSTTAGIIEYCKEKVMNMR-LENSIMSDGAWDYLLAHKFGGESKSRQ 185 Query: 182 DLEHSYLQ-LLGELNPVAVAGYIESYMNRTALGMTRPINSLDTNTSTLKVDAFLVTGEMA 358 + YL+ L LNP ++ Y+ ++ RT L T T VDA LVTG A Sbjct: 186 E----YLEELKATLNPKNLSKYLVAFTKRTDLSST-------IGTKLETVDALLVTGSKA 234 Query: 359 TDLSRAMVEMNGNMDPTKTQFISVIDATGAVMDETPDKLSVLFLNYLRNLGIMVTVTPEK 538 + L + + +M+ KT + V+D VM E PDKL+ + + G++ V Sbjct: 235 SHL-HTVYTTHKSMNKKKTTLL-VVDNVADVMQEAPDKLARSLILLCKGCGVLSGVAIPG 292 Query: 539 LQR 547 ++R Sbjct: 293 MER 295
>sp|Q9R0B6|LAMC3_MOUSE Laminin gamma-3 chain precursor (Laminin 12 gamma 3 subunit) Length = 1581 Score = 33.9 bits (76), Expect = 0.50 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%) Frame = -3 Query: 371 EINLWPFLPLLEMHPPSTW--TCLCPKN*SGESYQEQCDSCKIQYNQPL 231 E+ L P E+ PP++W TCLCP+ +G+ C+ C + Y + + Sbjct: 663 EVQLTSAWPQRELAPPASWVETCLCPQGYTGQF----CEFCALGYKREI 707
>sp|P52736|ZN133_HUMAN Zinc finger protein 133 Length = 654 Score = 32.7 bits (73), Expect = 1.1 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = -3 Query: 416 ESWWDPYCHSFPPSLEINLWPFLPLLEMHPPSTWTCLC 303 E + DP+C PP +P +L HPP +TCLC Sbjct: 78 ELYLDPFC---PPGFSSQKFPMQHVLCNHPPWIFTCLC 112
>sp|Q92GL5|RNH_RICCN Ribonuclease HI (RNase HI) Length = 152 Score = 32.7 bits (73), Expect = 1.1 Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = +2 Query: 80 IWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187 I++D YL+ G+ T WI NW+ ++W S E +N DL Sbjct: 67 IYTDSKYLQQGI-TAWIHNWIKNNWCKSNNEPVKNADL 103
>sp|P43807|RNH_HAEIN Ribonuclease HI (RNase HI) Length = 154 Score = 31.6 bits (70), Expect = 2.5 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%) Frame = +2 Query: 65 PWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGSCTE--RNMDL 187 P ++SD Y+K+G+ T WI NW ++W S + +N DL Sbjct: 62 PCLITLYSDSQYMKNGI-TKWIFNWKKNNWKASSGKPVKNQDL 103
>sp|Q8XBJ0|YFEW_ECO57 Hypothetical UPF0214 protein yfeW precursor Length = 434 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Frame = +2 Query: 2 YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154 YPNK + L + D T Y P ++ I+SD+ Y+ G + + + LD + Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226 Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238 R + L H+ + LL P +A Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|P77619|YFEW_ECOLI Hypothetical UPF0214 protein yfeW precursor Length = 434 Score = 31.6 bits (70), Expect = 2.5 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Frame = +2 Query: 2 YPNKLLGLFLMNPDD---------TTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHW 154 YPNK + L + D T Y P ++ I+SD+ Y+ G + + + LD + Sbjct: 167 YPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESVTGQPLDRY 226 Query: 155 FGSCTERNMDLEHS-YLQLLGELNPVAVA 238 R + L H+ + LL P +A Sbjct: 227 VEESIYRPLGLTHTVFNPLLKGFKPQQIA 255
>sp|Q12667|XYNA_PIRSP Endo-1,4-beta-xylanase A precursor (1,4-beta-D-xylan xylanohydrolase) (Xylanase A) (XYLA) Length = 625 Score = 31.2 bits (69), Expect = 3.2 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 11 KLLGLFLMNPDDTTTGYYPWTRAIWSDIPYLKSGVVTDWIQNWLLDHWFGS 163 KL+ + N D + G Y WTR P ++ VV +W+ W W G+ Sbjct: 484 KLVKQNIQNVDYSYVGIYGWTRN-----PLVEFYVVDNWLSQWRPGDWVGN 529
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 97,440,738 Number of Sequences: 369166 Number of extensions: 2094409 Number of successful extensions: 5595 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5207 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5591 length of database: 68,354,980 effective HSP length: 108 effective length of database: 48,403,600 effective search space used: 7115329200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)