Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P16
(653 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 (Ubi... 268 9e-72
sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme ... 255 6e-68
sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 (U... 236 3e-62
sp|Q42541|UBCD_ARATH Ubiquitin-conjugating enzyme E2 13 (Ub... 228 8e-60
sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubi... 226 5e-59
sp|P42747|UBC14_ARATH Ubiquitin-conjugating enzyme E2 14 (U... 224 1e-58
sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 (Ubi... 200 2e-51
sp|P60605|UB2G2_MOUSE Ubiquitin-conjugating enzyme E2 G2 (U... 165 8e-41
sp|Q29503|UBC3_RABIT Ubiquitin-conjugating enzyme E2-32 kDa... 164 2e-40
sp|Q02159|UBC7_YEAST Ubiquitin-conjugating enzyme E2-18 kDa... 163 4e-40
>sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
sp|P62254|UB2G1_MOUSE Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
sp|P62253|UB2G1_HUMAN Ubiquitin-conjugating enzyme E2 G1 (Ubiquitin-protein ligase G1)
(Ubiquitin carrier protein G1) (E217K) (UBC7)
Length = 170
Score = 268 bits (685), Expect = 9e-72
Identities = 125/165 (75%), Positives = 146/165 (88%), Gaps = 1/165 (0%)
Frame = +3
Query: 33 TNSASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDF 212
T S LLL++QLAELNKN EGFSAGL+DD ++++W+VLIIGPPDTLYEGG FKA L F
Sbjct: 2 TELQSALLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTF 61
Query: 213 PKDYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETII 392
PKDYP PPKM+FITEIWHPN+ +G+VCISILHEPGED+YGYEKPEERWLP+HTVETI+
Sbjct: 62 PKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIM 121
Query: 393 TSVISMLAEPNADSPANVDAAKDFRENFS-EFKRKVQRCVRRSQE 524
SVISMLA+PN DSPANVDAAK++RE+ + EFKRKV RCVR+SQE
Sbjct: 122 ISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166
>sp|P34477|UBC7_CAEEL Probable ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein
ligase 7) (Ubiquitin carrier protein 7)
Length = 164
Score = 255 bits (652), Expect = 6e-68
Identities = 116/160 (72%), Positives = 141/160 (88%)
Frame = +3
Query: 45 SVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFPKDY 224
S LLL+KQLA++ + +GFSAGLVDD +I+KW+VL+IGPPDTLYEGG+FKA LDFP+DY
Sbjct: 4 SSLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 63
Query: 225 PNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIITSVI 404
P PPKM+FI+EIWHPNI G VCISILH+PG+D++GYE+PEERWLPVHTVETI+ SVI
Sbjct: 64 PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 123
Query: 405 SMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 524
SML +PN +SPANVDAAK REN++EFK+KV +CVRRSQE
Sbjct: 124 SMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163
>sp|Q9Y818|UBC15_SCHPO Ubiquitin-conjugating enzyme E2 15 (Ubiquitin-protein ligase 15)
(Ubiquitin carrier protein 15)
Length = 167
Score = 236 bits (603), Expect = 3e-62
Identities = 110/163 (67%), Positives = 135/163 (82%)
Frame = +3
Query: 36 NSASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFP 215
+SAS LL+KQL E+ KN +GFS GLVDD++IF+W+V+IIGP DTLYEGG+F A L FP
Sbjct: 3 SSASEQLLRKQLKEIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFP 62
Query: 216 KDYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIIT 395
+DYP PPKM+F TEIWHPN+ +GEVCISILH PG+D+YGYE ERWLPVH+ ETI+
Sbjct: 63 QDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILI 122
Query: 396 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 524
SVISML+ PN +SPAN+DAAK+FREN EFK++V+R VRRS E
Sbjct: 123 SVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIE 165
>sp|Q42541|UBCD_ARATH Ubiquitin-conjugating enzyme E2 13 (Ubiquitin-protein ligase 13)
(Ubiquitin carrier protein 13)
Length = 166
Score = 228 bits (582), Expect = 8e-60
Identities = 106/165 (64%), Positives = 132/165 (80%)
Frame = +3
Query: 36 NSASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFP 215
NS + LLLQKQL +L K+ +GFSAGLVD++NIF+W V IIGPPDTLYEGG+F A + FP
Sbjct: 2 NSQACLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFP 61
Query: 216 KDYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIIT 395
++YPN PP +RF ++IWHPN+ G VCISILH PG+D GYE ERW PVHTVE+I+
Sbjct: 62 QNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIML 121
Query: 396 SVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQECF 530
S+ISML+ PN +SPANV+AAK++RE EFK+KV RCVR+SQE F
Sbjct: 122 SIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEMF 166
>sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein ligase 7)
(Ubiquitin carrier protein 7)
Length = 166
Score = 226 bits (575), Expect = 5e-59
Identities = 104/164 (63%), Positives = 132/164 (80%)
Frame = +3
Query: 39 SASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFPK 218
S + LLLQKQL +L K+ +GFSAGLVD++NIF+W V IIGPPDTLYEGG+F A + FP+
Sbjct: 3 SQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQ 62
Query: 219 DYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIITS 398
+YPN PP +RF +++WHPN+ S G VCISILH PG+D GYE ERW PVHTVE+I+ S
Sbjct: 63 NYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLS 122
Query: 399 VISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQECF 530
+ISML+ PN +SPANV+AAK++R+ EFK+KV RCVR+SQE F
Sbjct: 123 IISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEMF 166
>sp|P42747|UBC14_ARATH Ubiquitin-conjugating enzyme E2 14 (Ubiquitin-protein ligase 14)
(Ubiquitin carrier protein 14) (TAYO29)
Length = 167
Score = 224 bits (572), Expect = 1e-58
Identities = 104/166 (62%), Positives = 134/166 (80%)
Frame = +3
Query: 27 MTTNSASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAEL 206
M N AS LLLQKQL +L K +GFSAGLVD++N+F+W V I+GPPDTLYEGG+F A +
Sbjct: 1 MANNQAS-LLLQKQLKDLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIM 59
Query: 207 DFPKDYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVET 386
FP++YP PP + F +E+WHPN+ S G+VCISILH PG+D +GYE ERW PVHTVE+
Sbjct: 60 SFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVES 119
Query: 387 IITSVISMLAEPNADSPANVDAAKDFRENFSEFKRKVQRCVRRSQE 524
I+ S+ISML+ PN +SPANV+AAK++R+N +EF++KV RCVRRSQE
Sbjct: 120 IVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQE 165
>sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein ligase 7)
(Ubiquitin carrier protein 7)
Length = 168
Score = 200 bits (509), Expect = 2e-51
Identities = 90/144 (62%), Positives = 113/144 (78%)
Frame = +3
Query: 93 SEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFPKDYPNHPPKMRFITEIWHP 272
S GF G VDD N+F+WQV IIGPP+TLY+GGYF A + FP++YPN PP +RF +E+WHP
Sbjct: 24 SMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHP 83
Query: 273 NIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIITSVISMLAEPNADSPANVDA 452
N+ G VCISI H PG+D GYE ERW PVHTVE+I+ S+ISML+ PN +SPAN++A
Sbjct: 84 NVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEA 142
Query: 453 AKDFRENFSEFKRKVQRCVRRSQE 524
AKD+RE EFK+KV+R VR+SQE
Sbjct: 143 AKDWREKQDEFKKKVRRAVRKSQE 166
>sp|P60605|UB2G2_MOUSE Ubiquitin-conjugating enzyme E2 G2 (Ubiquitin-protein ligase G2)
(Ubiquitin carrier protein G2)
sp|P60604|UB2G2_HUMAN Ubiquitin-conjugating enzyme E2 G2 (Ubiquitin-protein ligase G2)
(Ubiquitin carrier protein G2)
Length = 165
Score = 165 bits (418), Expect = 8e-41
Identities = 80/154 (51%), Positives = 106/154 (68%)
Frame = +3
Query: 57 LQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFPKDYPNHP 236
L + +L N EG AG +++EN F+W+ LI+GP DT +E G F A L FP DYP P
Sbjct: 9 LMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSP 68
Query: 237 PKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIITSVISMLA 416
PKMRF E++HPNI G VCISILH PG+D GYE ERW PV +VE I+ SV+SMLA
Sbjct: 69 PKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLA 128
Query: 417 EPNADSPANVDAAKDFRENFSEFKRKVQRCVRRS 518
EPN +S ANVDA+K +R++ +F + ++ V++S
Sbjct: 129 EPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 162
>sp|Q29503|UBC3_RABIT Ubiquitin-conjugating enzyme E2-32 kDa complementing
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
(E2-CDC34)
Length = 238
Score = 164 bits (415), Expect = 2e-40
Identities = 79/146 (54%), Positives = 100/146 (68%)
Frame = +3
Query: 33 TNSASVLLLQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDF 212
T+S L+L+ L L + EGF LVD+ +++ W+V I GPP+TLYEGGYFKA + F
Sbjct: 7 TSSQKALMLE--LKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKF 64
Query: 213 PKDYPNHPPKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETII 392
P DYP PP RF+T++WHPNI +G+VCISILH P +D E P ERW P V TI+
Sbjct: 65 PIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTIL 124
Query: 393 TSVISMLAEPNADSPANVDAAKDFRE 470
SVIS+L EPN SPANVDA+ FR+
Sbjct: 125 LSVISLLNEPNTFSPANVDASVMFRK 150
>sp|Q02159|UBC7_YEAST Ubiquitin-conjugating enzyme E2-18 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 165
Score = 163 bits (412), Expect = 4e-40
Identities = 82/154 (53%), Positives = 104/154 (67%)
Frame = +3
Query: 57 LQKQLAELNKNGSEGFSAGLVDDENIFKWQVLIIGPPDTLYEGGYFKAELDFPKDYPNHP 236
L K+L +L K+ G AG + NIF W LI GPPDT Y G F A+L+FPKDYP P
Sbjct: 9 LLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSP 68
Query: 237 PKMRFITEIWHPNIGSSGEVCISILHEPGEDRYGYEKPEERWLPVHTVETIITSVISMLA 416
PK+ F I HPNI +GEVCISILH PG+D YE EERW PV +VE I+ SV+SML+
Sbjct: 69 PKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLS 128
Query: 417 EPNADSPANVDAAKDFRENFSEFKRKVQRCVRRS 518
EPN +S AN+DA +R+N EF+R+V+ + +S
Sbjct: 129 EPNIESGANIDACILWRDNRPEFERQVKLSILKS 162
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,941,406
Number of Sequences: 369166
Number of extensions: 1250929
Number of successful extensions: 3433
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3353
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5413810770
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)