Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P10
(474 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10190|YAWG_SCHPO Hypothetical GTP-binding protein C3F10... 45 1e-04
sp|P53145|YGJ9_YEAST Hypothetical GTP-binding protein in SE... 38 0.010
sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-... 37 0.030
sp|Q9BX26|SYCP2_HUMAN Synaptonemal complex protein 2 (SCP-2... 33 0.25
sp|Q8IN81|FRU_DROME Sex determination protein fruitless 32 0.57
sp|P35177|SPT7_YEAST Transcriptional activator SPT7 30 2.8
sp|Q9ZM46|IF2_HELPJ Translation initiation factor IF-2 30 3.7
sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein... 29 4.8
sp|P23482|HYFB_ECOLI Hydrogenase-4 component B 29 6.3
sp|Q9UKJ3|K0553_HUMAN Protein KIAA0553 29 6.3
>sp|Q10190|YAWG_SCHPO Hypothetical GTP-binding protein C3F10.16c in chromosome I
Length = 616
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +1
Query: 4 PNLDRAARIILKDYVDGRLLYRHPPP 81
P+ RAARI+LKDYV+G+LLY HPPP
Sbjct: 442 PDDSRAARILLKDYVNGKLLYVHPPP 467
>sp|P53145|YGJ9_YEAST Hypothetical GTP-binding protein in SEH1-PRP20 intergenic region
Length = 640
Score = 38.1 bits (87), Expect = 0.010
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +1
Query: 16 RAARIILKDYVDGRLLYRHPPP 81
RA+R ILKDYV+G+LLY +PPP
Sbjct: 482 RASRYILKDYVNGKLLYVNPPP 503
>sp|P54675|PI3K3_DICDI Phosphatidylinositol 3-kinase 3 (PI3-kinase) (PtdIns-3-kinase)
(PI3K)
Length = 1585
Score = 36.6 bits (83), Expect = 0.030
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Frame = +1
Query: 136 MKNRPKPSGVKNTKTFEPEIPLHGETIQSI------KGPNYLTIKNTAMHEGLKRLAINQ 297
++ P + + K E E + GETI +I +GP+ LT+ M + L+ + N
Sbjct: 146 LEKSPSKGFIISPKKPEEENEIEGETINNIAITNYTQGPSMLTL----MKKKLENIKKNN 201
Query: 298 NNNNDTCDTESASSNAKPWRQNNKRG 375
NNNN+ + + S+N NN G
Sbjct: 202 NNNNNNGNGNNNSNNNNSNSNNNNNG 227
>sp|Q9BX26|SYCP2_HUMAN Synaptonemal complex protein 2 (SCP-2 protein) (Synaptonemal
complex lateral element protein) (hsSCP2)
Length = 1530
Score = 33.5 bits (75), Expect = 0.25
Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Frame = +1
Query: 133 KMKNRPKPSGVKNTKTF-EPEIPLHGETIQSIKGPNYLTIKNTAMHEGL---KRLAINQN 300
+ +N PK SG KNT+ + + P+ ET + K + N + E L K+ ++++
Sbjct: 695 QQQNHPKYSGQKNTENAKQSDWPVESET--TFKS----VLLNKTIEESLIYRKKYILSKD 748
Query: 301 NNNDTCD-TESASSNAKPWRQNNKR---------GKKEKMRNK 399
N TCD SAS N + R+ K K++KMR K
Sbjct: 749 VNTATCDKNPSASKNVQSHRKAEKELTSELNSWDSKQKKMREK 791
>sp|Q8IN81|FRU_DROME Sex determination protein fruitless
Length = 955
Score = 32.3 bits (72), Expect = 0.57
Identities = 13/42 (30%), Positives = 25/42 (59%)
Frame = +1
Query: 292 NQNNNNDTCDTESASSNAKPWRQNNKRGKKEKMRNKHAALDQ 417
N NNNN+ ++ S ++N+ R+ N G++E+ R + D+
Sbjct: 401 NNNNNNNNNNSSSNNNNSSSNRERNNSGERERERERERERDR 442
>sp|P35177|SPT7_YEAST Transcriptional activator SPT7
Length = 1332
Score = 30.0 bits (66), Expect = 2.8
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 13/102 (12%)
Frame = +1
Query: 139 KNRPKPSGVKNTKTFEPEIPLHGETIQSI-----KGPNYLTIKNTAMHEGLKRLAINQNN 303
K K S ++KT + E P + + + S+ K + +HE + + I +N
Sbjct: 595 KENGKVSEKDSSKTVKDEAPTNDDKLTSVIPEGEKEKDKTASSTVTVHENVNKNEIKENG 654
Query: 304 NNDTCD-------TESASSNAKPWRQNNKRGKKEK-MRNKHA 405
N+ D TE +S +A +++ + G ++K NK A
Sbjct: 655 KNEEQDMVEESSKTEDSSKDADAAKKDTEDGLQDKTAENKEA 696
>sp|Q9ZM46|IF2_HELPJ Translation initiation factor IF-2
Length = 949
Score = 29.6 bits (65), Expect = 3.7
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Frame = +1
Query: 130 KKMKNRPKP----SGVKNTKTFEPEIPLHGETIQSIKGPNYLTIKNTAMHEGLKRLAIN- 294
+K K P P ++ TFE + PL T +++ K R A+N
Sbjct: 111 EKKKEAPAPIIKKKEIEIVNTFENQTPLVENTPKAVSHSQIEKAKQKLQEIQKSREALNK 170
Query: 295 --QNNNNDTCDTESAS--SNAKPWRQNNKRGKKEKMRNKH 402
Q+N N T + SAS SNAK K+ ++E R+++
Sbjct: 171 LTQSNTNTTNNANSASNVSNAKKEISEVKKQEQEIKRHEN 210
>sp|P40631|MLH_TETTH Micronuclear linker histone polyprotein (MIC LH) [Contains:
Micronuclear linker histone-alpha; Micronuclear linker
histone-beta; Micronuclear linker histone-delta;
Micronuclear linker histone-gamma]
Length = 633
Score = 29.3 bits (64), Expect = 4.8
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +1
Query: 205 GETIQSIKGPNYLTIKNTAMHEGLKRLAINQNNNNDTCDTESASSNAKPWRQNNKRGKKE 384
G++ KG + KN+ K + N+N+T T +S NA Q RG++
Sbjct: 421 GKSASKSKGKSSSKGKNSKSRSASKPKSNAAQNSNNTHQTADSSENASSTTQTRTRGRQR 480
Query: 385 KMRN 396
+ ++
Sbjct: 481 EQKD 484
>sp|P23482|HYFB_ECOLI Hydrogenase-4 component B
Length = 672
Score = 28.9 bits (63), Expect = 6.3
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -1
Query: 258 CILNCQVIWSLD*LNSFTVQWYFWFESFCI 169
C++ C I ++ LN F +WY W F +
Sbjct: 388 CLIGCLAISAIPPLNGFISEWYTWQSLFSL 417
>sp|Q9UKJ3|K0553_HUMAN Protein KIAA0553
Length = 1089
Score = 28.9 bits (63), Expect = 6.3
Identities = 21/89 (23%), Positives = 43/89 (48%)
Frame = +1
Query: 142 NRPKPSGVKNTKTFEPEIPLHGETIQSIKGPNYLTIKNTAMHEGLKRLAINQNNNNDTCD 321
N+ +P G ++T + G ++ S K + + ++ E K +++ D
Sbjct: 230 NKQEPGGSHGSETEDT-----GRSLPSKKERSGKSHRHKKKKEHKKS---SKHKRKPKAD 281
Query: 322 TESASSNAKPWRQNNKRGKKEKMRNKHAA 408
TE SS A+ ++ KR K+++ +NK +A
Sbjct: 282 TEEKSSKAESGEKSKKRKKRKRKKNKSSA 310
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,394,818
Number of Sequences: 369166
Number of extensions: 1107825
Number of successful extensions: 3409
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3293
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)