Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P09
(272 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I954|TYBB_CYPCA Thymosin beta-b 44 2e-04
sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Co... 43 3e-04
sp|P21753|TYB9_PIG Thymosin beta-9 42 4e-04
sp|P33248|TYB12_LATJA Thymosin beta-12 40 0.002
sp|P63312|TYB10_RAT Thymosin beta-10 >gi|54036496|sp|Q6ZWY8... 40 0.002
sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4) 40 0.002
sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: ... 40 0.002
sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: He... 40 0.002
sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin b... 40 0.002
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog 39 0.004
>sp|Q9I954|TYBB_CYPCA Thymosin beta-b
Length = 43
Score = 43.5 bits (101), Expect = 2e-04
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 176
+A P ++EV++F K KLK E QEK LP +TI+QEK
Sbjct: 1 MADKPDISEVSQFDKTKLKKTETQEKNTLPTKETIEQEK 39
>sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Contains: Thymosin beta-8]
Length = 42
Score = 42.7 bits (99), Expect = 3e-04
Identities = 20/39 (51%), Positives = 25/39 (64%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 176
+A P + E+N F K KLK E QEK LP +TI+QEK
Sbjct: 1 MADKPDLGEINSFDKAKLKKTETQEKNTLPTKETIEQEK 39
>sp|P21753|TYB9_PIG Thymosin beta-9
Length = 41
Score = 42.0 bits (97), Expect = 4e-04
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +3
Query: 63 ATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 176
A P + E+N F K KLK E QEK LP +TI+QEK
Sbjct: 1 ADKPDMGEINSFDKAKLKKTETQEKNTLPTKETIEQEK 38
>sp|P33248|TYB12_LATJA Thymosin beta-12
Length = 43
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +3
Query: 72 PVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEK 176
P ++EV F K KLK E QEK LP +TI+QEK
Sbjct: 4 PDISEVTSFDKTKLKKTETQEKNPLPSKETIEQEK 38
>sp|P63312|TYB10_RAT Thymosin beta-10
sp|Q6ZWY8|TYB10_MOUSE Thymosin beta-10
sp|P63313|TYB10_HUMAN Thymosin beta-10
sp|P63314|TYB10_HORSE Thymosin beta-10
Length = 44
Score = 40.0 bits (92), Expect = 0.002
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQ 185
+A P + E+ F K KLK E QEK LP +TI+QEK +
Sbjct: 1 MADKPDMGEIASFDKAKLKKTETQEKNTLPTKETIEQEKRSE 42
>sp|P34032|TYB4_RABIT Thymosin beta-4 (T beta 4)
Length = 43
Score = 40.0 bits (92), Expect = 0.002
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +3
Query: 63 ATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 188
A P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 1 ADKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 42
>sp|P20065|TYB4_MOUSE Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 50
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 188
++ P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 7 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 49
>sp|P62329|TYB4_RAT Thymosin beta-4 (T beta 4) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
sp|P62328|TYB4_HUMAN Thymosin beta-4 (T beta 4) (Fx) [Contains: Hematopoietic system
regulatory peptide (Seraspenide)]
Length = 44
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 188
++ P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 1 MSDKPDMAEIEKFDKSKLKKTETQEKNPLPSKETIEQEKQAGE 43
>sp|P18758|TYB4_XENLA Thymosin beta-4 (T beta 4) (Thymosin beta 4Xen)
Length = 44
Score = 39.7 bits (91), Expect = 0.002
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 60 LATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQE 188
++ P + E+ +F K KLK E QEK LP +TI+QEK E
Sbjct: 1 MSDKPDMAEIEKFDKAKLKKTETQEKNPLPSKETIEQEKQTSE 43
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
Length = 1169
Score = 38.9 bits (89), Expect = 0.004
Identities = 25/82 (30%), Positives = 44/82 (53%)
Frame = +3
Query: 24 NKSIMSETAETKLATSPVVNEVNEFQKDKLKHVEAQEKVVLPDHDTIKQEKTEQELKDEI 203
NK I+ E E L ++N +NE + + +E +EK++ + +K+ ++++ LK
Sbjct: 748 NKDILEELEELNLKREEILNRINEIESKINELIERREKII----NELKEYESDENLKRMN 803
Query: 204 EKGTKLKHVETTEKTVLPNEED 269
E +LK +E EK L NE D
Sbjct: 804 EIEGELKILE-KEKAKLKNEID 824
Score = 33.5 bits (75), Expect = 0.16
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +3
Query: 27 KSIMSETAETKLATSPVVNEVNEFQKDKLK--HVEAQEKVVLPDHDTIKQEKTEQELKD- 197
+ I E KL + ++NE+NE +++ H +E V ++D + + ELK
Sbjct: 267 REIDVEIENLKLRLNNIINELNEKGNEEVLELHKSIKELEVEIENDKKVLDSSINELKKV 326
Query: 198 EIEKGTKLKHVETTEKTVLPNEEDI 272
E+E K K ++ T+K ++ N + I
Sbjct: 327 EVEIENKKKEIKETQKKIIENRDSI 351
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,792,336
Number of Sequences: 369166
Number of extensions: 399028
Number of successful extensions: 2371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2346
length of database: 68,354,980
effective HSP length: 60
effective length of database: 57,270,880
effective search space used: 1718126400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)