Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P08
(908 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O81635|ATK4_ARATH Kinesin-4 (Kinesin-like protein D) 162 1e-39
sp|P46864|ATK2_ARATH Kinesin-2 (Kinesin-like protein B) 160 4e-39
sp|P46875|ATK3_ARATH Kinesin-3 (Kinesin-like protein C) 160 5e-39
sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3 151 3e-36
sp|Q07970|ATK1_ARATH Kinesin-1 (Kinesin-like protein A) 147 4e-35
sp|P20480|NCD_DROME Claret segregational protein 146 7e-35
sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3 146 9e-35
sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3 145 1e-34
sp|P28739|KLPA_EMENI Kinesin-like protein klpA 142 1e-33
sp|Q92376|KLP1_SCHPO Kinesin-like protein 1 140 5e-33
>sp|O81635|ATK4_ARATH Kinesin-4 (Kinesin-like protein D)
Length = 987
Score = 162 bits (410), Expect = 1e-39
Identities = 101/304 (33%), Positives = 167/304 (54%), Gaps = 10/304 (3%)
Frame = +1
Query: 7 VNKQVKDDKLEFYEEKIIELD--KEIAAAKQDLVDQQQSQDNLKENHSDADLKAEIKRSL 180
V K+ + E +EE+ I L+ K I KQ L + L+ + + + + L
Sbjct: 307 VEKKFQRTNFEHHEEQKILLNQQKHIQELKQTLYTTKAGMKLLQMKYQEDFF--HLGKHL 364
Query: 181 QVKKLMSTRLQQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNRGNKQCVSFPDIYT 360
+T ++ + + YN ++DLKG IRV+CR RP + + G V D T
Sbjct: 365 NGLAYAATGYKRVLEENRKLYNLVQDLKGNIRVYCRVRPFLPGQES-GGLSAVEDIDEGT 423
Query: 361 VIVKLSK-----GEKEFQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNVCIFAYGQTGSG 525
+ +++ G+K F F++VF P+ QE++F+D L++S DG+NVCIFAYGQTGSG
Sbjct: 424 ITIRVPSKYGKAGQKPFMFNKVFGPSATQEEVFSDMQPLVRSVLDGYNVCIFAYGQTGSG 483
Query: 526 KTFTLIGN---IESNPGIVPRAFKRIFEIAHEGNIKYKTRLHCYMLELYNEKLLDLMTSD 696
KTFT+ G E + G+ RA +F ++++ + MLE+YNE++ DL+ D
Sbjct: 484 KTFTMTGPKELTEESLGVNYRALADLFLLSNQRKDTTSYEISVQMLEIYNEQVRDLLAQD 543
Query: 697 AVYSDKLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTKMNSESSRSHL 876
+ +LEI+ ++H + VP A++ +++D + +L G+ NR ++ST MN SSRSH
Sbjct: 544 G-QTKRLEIRNNSHNGINVPEASLVPVSSTDDVIQLMDLGHMNRAVSSTAMNDRSSRSHS 602
Query: 877 IVSI 888
V++
Sbjct: 603 CVTV 606
>sp|P46864|ATK2_ARATH Kinesin-2 (Kinesin-like protein B)
Length = 745
Score = 160 bits (406), Expect = 4e-39
Identities = 106/309 (34%), Positives = 168/309 (54%), Gaps = 18/309 (5%)
Frame = +1
Query: 25 DDKLEFYEEKIIELDKEIAAAKQDL-VDQQQSQDNLKENHSDADLKAEIKRSLQVKKLMS 201
+ K ++I EL ++ A+++ L V + + + E + E+K L+ +L
Sbjct: 308 ESKCSVQNKEIEELQDQLVASERKLQVADLSTFEKMNEFEEQKESIMELKGRLEEAEL-- 365
Query: 202 TRLQQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNRGNKQCVSFPDIYTVIVK--- 372
+L + LRK +N I++LKG IRVFCR RP+ E + + +S+P + +
Sbjct: 366 -KLIEGEKLRKKLHNTIQELKGNIRVFCRVRPLLSGENSSEEAKTISYPTSLEALGRGID 424
Query: 373 -LSKGEKE-FQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNVCIFAYGQTGSGKTFTLIG 546
L G+ F FD+VF P+ QED+F + S+L+QSA DG+ VCIFAYGQTGSGKT+T++G
Sbjct: 425 LLQNGQSHCFTFDKVFVPSASQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMG 484
Query: 547 NIESNP---GIVPRAFKRIFEIAHEGNIK-YKTRLHCYMLELYNEKLLDLMTS--DAVYS 708
NP G++PR ++IF+ + +K L MLE+YNE + DL+++ +AV +
Sbjct: 485 R-PGNPDEKGLIPRCLEQIFQTRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVRA 543
Query: 709 D------KLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTKMNSESSRS 870
D K IK D G V + +S Q+ L NR + T MN +SSRS
Sbjct: 544 DNGVSPQKYAIKHDASGNTHVVELTVVDVRSSKQVSFLLDHAARNRSVGKTAMNEQSSRS 603
Query: 871 HLIVSIMLT 897
H + ++ ++
Sbjct: 604 HFVFTLKIS 612
>sp|P46875|ATK3_ARATH Kinesin-3 (Kinesin-like protein C)
Length = 754
Score = 160 bits (405), Expect = 5e-39
Identities = 109/310 (35%), Positives = 157/310 (50%), Gaps = 20/310 (6%)
Frame = +1
Query: 28 DKLEFYEEKIIELDKEIAAAKQDLVDQQQSQDNLKENHSDADLKAEIKRSLQVKKLMSTR 207
D+L E ++ D + DQ+QS +LK +A+LK
Sbjct: 332 DRLVNSERRLQVSDLSTFEKMNEYEDQKQSIIDLKSRVEEAELK---------------- 375
Query: 208 LQQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNRGNKQCVSFPDIYTVIVKLSKG- 384
L + LRK +N I +LKG IRVFCR RP+ E N + +S+P T + L +G
Sbjct: 376 LVEGEKLRKKLHNTILELKGNIRVFCRVRPLLPGENNGDEGKTISYP---TSLEALGRGI 432
Query: 385 -------EKEFQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNVCIFAYGQTGSGKTFTLI 543
+ F FD+VF P QED+F + S+L+QSA DG+ VCIFAYGQTGSGKT+T++
Sbjct: 433 DLMQNAQKHAFTFDKVFAPTASQEDVFTEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 492
Query: 544 ---GNIESNPGIVPRAFKRIFEIAHEGNIK-YKTRLHCYMLELYNEKLLDLM-------- 687
GN+E G++PR ++IFE + +K L MLE+YNE + DL+
Sbjct: 493 GRPGNVEEK-GLIPRCLEQIFETRQSLRSQGWKYELQVSMLEIYNETIRDLLSTNKEAVR 551
Query: 688 TSDAVYSDKLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTKMNSESSR 867
T V K IK D G V I +S ++ L NR + T+MN +SSR
Sbjct: 552 TDSGVSPQKHAIKHDASGNTHVAELTILDVKSSREVSFLLDHAARNRSVGKTQMNEQSSR 611
Query: 868 SHLIVSIMLT 897
SH + ++ ++
Sbjct: 612 SHFVFTLRIS 621
>sp|P45962|KLP3_CAEEL Kinesin-like protein klp-3
Length = 598
Score = 151 bits (381), Expect = 3e-36
Identities = 102/316 (32%), Positives = 174/316 (55%), Gaps = 17/316 (5%)
Frame = +1
Query: 1 KSVNKQVKDDKLEFYEEKIIELDKE-----IAAAKQDLVDQQQSQDNLKENHSDAD--LK 159
+SV+ Q D ++ Y + + + +E + ++L ++ L + DA
Sbjct: 144 RSVSPQPTGDVIKPYPQMVQSMREEGHWKKLQRCAEELKTEKDELKRLALDTKDAFNVCM 203
Query: 160 AEIKRSLQVK-----KLMSTRLQQEIILRKTYYNQIEDLKGKIRVFCRCRP-ISQEEVNR 321
AE++ L K +++ R + E+ RK +NQ+ +L G IRVF R RP ++ E N+
Sbjct: 204 AEMRMMLTSKTTDFFRVLIERYKAEMEKRKQLHNQLVELNGNIRVFYRIRPQLASETDNQ 263
Query: 322 GNKQCVSFPDIYTVIVKLSKGEKEFQF--DRVFPPNTLQEDIFNDTSKLLQSAFDGFNVC 495
+ D V V + G ++ D+V P + Q+ IFN+ S ++ S DG+NVC
Sbjct: 264 KPVVVIDEMDNGVVHVSNTTGTRKTSAGADKVIPTDFSQDQIFNEVSPIITSCIDGYNVC 323
Query: 496 IFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIFEIAHE--GNIKYKTRLHCYMLELYNE 669
IFAYG TGSGKT+T+ G + + PGI RA ++FE A E G+IKY ++ M+E+YNE
Sbjct: 324 IFAYGHTGSGKTYTMDGPV-TMPGINQRAIMQLFETAKERTGDIKYDIKV--AMMEIYNE 380
Query: 670 KLLDLMTSDAVYSDKLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTKM 849
K+ DL+ + + L I++ G +PG + +++++ E +G N+ +A+T+
Sbjct: 381 KIRDLLNTS---NTNLAIRQTEEGRSSIPGLEEVSVNSAEEVTETLARGRKNKAVAATEA 437
Query: 850 NSESSRSHLIVSIMLT 897
N ESSRSH+IV ++++
Sbjct: 438 NIESSRSHVIVRVLVS 453
>sp|Q07970|ATK1_ARATH Kinesin-1 (Kinesin-like protein A)
Length = 793
Score = 147 bits (371), Expect = 4e-35
Identities = 98/313 (31%), Positives = 165/313 (52%), Gaps = 30/313 (9%)
Frame = +1
Query: 49 EKIIELDKEIAAAKQDLVDQQQSQDNLKENHSDADLKAEIKRSLQVKKL----------M 198
E+ L KE + ++++QQ + N ++ +DA + + K L M
Sbjct: 352 EETCSLQKE----RLNMLEQQLAIANERQKMADASVSLTRTEFEEQKHLLCELQDRLADM 407
Query: 199 STRLQQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNRGNKQCVSFPDIYTV----I 366
+L + +LRK +N I +LKG IRVFCR RP+ ++ R +++P +
Sbjct: 408 EHQLCEGELLRKKLHNTILELKGNIRVFCRVRPLLPDDGGRHEATVIAYPTSTEAQGRGV 467
Query: 367 VKLSKGEKE-FQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNVCIFAYGQTGSGKTFTLI 543
+ G K F FD+VF QE++F + S+L+QSA DG+ VCIFAYGQTGSGKT+T++
Sbjct: 468 DLVQSGNKHPFTFDKVFNHEASQEEVFFEISQLVQSALDGYKVCIFAYGQTGSGKTYTMM 527
Query: 544 GNIES--NPGIVPRAFKRIFEIAHE-GNIKYKTRLHCYMLELYNEKLLDLMTS------D 696
G E+ G++PR+ ++IF+ + G +K ++ MLE+YNE + DL+++ D
Sbjct: 528 GRPEAPDQKGLIPRSLEQIFQASQSLGAQGWKYKMQVSMLEIYNETIRDLLSTNRTTSMD 587
Query: 697 AVYSD------KLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTKMNSE 858
V +D + I D +G V I + ++ L + +R + T+MN +
Sbjct: 588 LVRADSGTSGKQYTITHDVNGHTHVSDLTIFDVCSVGKISSLLQQAAQSRSVGKTQMNEQ 647
Query: 859 SSRSHLIVSIMLT 897
SSRSH + ++ ++
Sbjct: 648 SSRSHFVFTMRIS 660
>sp|P20480|NCD_DROME Claret segregational protein
Length = 700
Score = 146 bits (369), Expect = 7e-35
Identities = 101/318 (31%), Positives = 160/318 (50%), Gaps = 22/318 (6%)
Frame = +1
Query: 7 VNKQVKDDKLEFYEEKIIELDKEIAAAKQDLVDQQQSQDNLKENHSDAD-----LKAEIK 171
+ +QVK + KI + + K++L + Q + +K H+ L+ +
Sbjct: 254 LQRQVKQ-----HTAKIETITSTLGRTKEELSELQAIHEKVKTEHAALSTEVVHLRQRTE 308
Query: 172 RSLQVKKLMSTRLQ-------QEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNRGNK 330
L+ + + L+ Q + RK +N + DL+G IRVFCR RP + E NR
Sbjct: 309 ELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENR--- 365
Query: 331 QCVS--FPDIYTVIV-------KLSKGEKEFQFDRVFPPNTLQEDIFNDTSKLLQSAFDG 483
C + + D TV + K G++ F FD+VF P + Q DIF S L+QSA DG
Sbjct: 366 MCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDG 425
Query: 484 FNVCIFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIFE-IAHEGNIKYKTRLHCYMLEL 660
+N+CIFAYGQTGSGKT+T+ G + + G++PR +F+ I N+ ++ + LE+
Sbjct: 426 YNICIFAYGQTGSGKTYTMDG-VPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 484
Query: 661 YNEKLLDLMTSDAVYSDKLEIKKDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIAS 840
YNE L DL++++ ++ + K+ + V +T + L+ L NR AS
Sbjct: 485 YNEVLYDLLSNEQ-KDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAS 543
Query: 841 TKMNSESSRSHLIVSIML 894
T N SSRSH + + L
Sbjct: 544 TAGNERSSRSHAVTKLEL 561
>sp|O35231|KIFC3_MOUSE Kinesin-like protein KIFC3
Length = 687
Score = 146 bits (368), Expect = 9e-35
Identities = 94/254 (37%), Positives = 143/254 (56%), Gaps = 9/254 (3%)
Frame = +1
Query: 154 LKAEIKRSLQVKKLMSTRL----QQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNR 321
+KAEI ++++ + L ++E+ LRK +N++ LKG IRV R RP+++E+
Sbjct: 264 VKAEIGQAIEEVNSNNQELLRKYRRELQLRKKCHNELVRLKGNIRVIARVRPVTKEDGEG 323
Query: 322 GNK-QCVSF-PDIYTVIVKLSKGEK-EFQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNV 492
V+F PD ++I L KG+ F+ D+VF P Q+D+F + L+ S DGFNV
Sbjct: 324 PEATNAVTFDPDDDSIIHLLHKGKPVSFELDKVFSPWASQQDVFQEVQALITSCIDGFNV 383
Query: 493 CIFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIFEIAHEGNIKYKTRLHCYMLELYNEK 672
CIFAYGQTG+GKT+T+ G E NPGI RA + +F E ++ + E+YNE
Sbjct: 384 CIFAYGQTGAGKTYTMEGTPE-NPGINQRALQLLFSEVQEKASDWQYNITVSAAEIYNEV 442
Query: 673 LLDLMTSDAVYSDKLEIK--KDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTK 846
L DL+ + +KLEI+ D G + VPG + D + ++F G +NR T
Sbjct: 443 LRDLLGKEP--QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGYNNRTTEFTN 500
Query: 847 MNSESSRSHLIVSI 888
+N SSRSH ++ +
Sbjct: 501 LNEHSSRSHALLIV 514
>sp|Q9BVG8|KIFC3_HUMAN Kinesin-like protein KIFC3
Length = 694
Score = 145 bits (367), Expect = 1e-34
Identities = 93/254 (36%), Positives = 143/254 (56%), Gaps = 9/254 (3%)
Frame = +1
Query: 154 LKAEIKRSLQVKKLMSTRL----QQEIILRKTYYNQIEDLKGKIRVFCRCRPISQEEVNR 321
+KAEI ++++ + L ++E+ LRK +N++ LKG IRV R RP+++E+
Sbjct: 264 VKAEIGQAIEEVNSNNQELLRKYRRELQLRKKCHNELVRLKGNIRVIARVRPVTKEDGEG 323
Query: 322 GNK-QCVSFP-DIYTVIVKLSKGEK-EFQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNV 492
V+F D ++I L KG+ F+ D+VF P Q+D+F + L+ S DGFNV
Sbjct: 324 PEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNV 383
Query: 493 CIFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIFEIAHEGNIKYKTRLHCYMLELYNEK 672
CIFAYGQTG+GKT+T+ G E NPGI RA + +F E ++ + E+YNE
Sbjct: 384 CIFAYGQTGAGKTYTMEGTAE-NPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEV 442
Query: 673 LLDLMTSDAVYSDKLEIK--KDTHGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTK 846
L DL+ + +KLEI+ D G + VPG + D + ++F G++NR T
Sbjct: 443 LRDLLGKEP--QEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTN 500
Query: 847 MNSESSRSHLIVSI 888
+N SSRSH ++ +
Sbjct: 501 LNEHSSRSHALLIV 514
>sp|P28739|KLPA_EMENI Kinesin-like protein klpA
Length = 770
Score = 142 bits (359), Expect = 1e-33
Identities = 94/282 (33%), Positives = 146/282 (51%), Gaps = 19/282 (6%)
Frame = +1
Query: 106 QQQSQDNLKENHSDADLKAEIKRSLQVKKLMSTRLQQEIILRKTYYNQIEDLKGKIRVFC 285
++QS+ + N D AE + + +L++E LR+ +NQ+++LKG IRVFC
Sbjct: 374 EEQSEAFERLNQQMMDAMAETNAAKE-------KLRREETLRRKLHNQVQELKGNIRVFC 426
Query: 286 RCRPISQEEVNRGNKQCVSF----------------PDIYTVIVKLSKGEKEFQFDRVFP 417
R RP + N G F P+ + +++ F FD VF
Sbjct: 427 RVRPTLE---NEGASDAAQFTYPDEGEDSKEINIIGPEEKSSFGTVTRKNHNFSFDHVFG 483
Query: 418 PNTLQEDIFNDTSKLLQSAFDGFNVCIFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIF 597
P+ D+F++ S+L+QSA DG+NVCIF YGQTGSGKT T+ S G++PRA +I+
Sbjct: 484 PSAQNSDVFDEISQLVQSALDGYNVCIFCYGQTGSGKTHTM----SSLDGMIPRAVHQIY 539
Query: 598 EIAHEGNIK-YKTRLHCYMLELYNEKLLDLM-TSDAVYSDKLEIKKD-THGMVIVPGAAI 768
E A K ++ + +E+YNE L DL+ ++ + KLEI+ D G + A
Sbjct: 540 ETATSLEEKGWRYTMEGNFVEVYNENLNDLLGKAEELDKKKLEIRHDMQRGKTTITDATT 599
Query: 769 QTATTSDQLKELFLKGNSNRHIASTKMNSESSRSHLIVSIML 894
+ + ++ L + +NR +A+TK N SSRSH I + L
Sbjct: 600 VQLESPEMVESLLKRAAANRSVAATKANERSSRSHSIFILKL 641
>sp|Q92376|KLP1_SCHPO Kinesin-like protein 1
Length = 832
Score = 140 bits (353), Expect = 5e-33
Identities = 106/316 (33%), Positives = 160/316 (50%), Gaps = 21/316 (6%)
Frame = +1
Query: 10 NKQVKDD-KLEFYEEKIIELDKEIAAAKQDLVDQQQSQDNLKENHSDA-DLKAEIKRSLQ 183
NK +K++ K EK+ EL K +A+ QD + N +A +L+A I++ +
Sbjct: 401 NKLLKEEHKHHSTSEKLEELSKYVASI----------QDKERNNGQNALELQARIQQLER 450
Query: 184 VKKLMSTRLQQEIILRKTYYNQIEDLKGKIRVFCRCRPI-SQEEVNRGNKQCVSFPDI-- 354
+ M +L E I+R+ +N I++LKG IRVFCR RP+ EE + FPD
Sbjct: 451 RNEDMYNKLLAEEIIRRKLHNDIQELKGNIRVFCRVRPLLPSEESEYCIADVLQFPDKDA 510
Query: 355 ---YTVIVKLSKGEK----------EFQFDRVFPPNTLQEDIFNDTSKLLQSAFDGFNVC 495
+I+K E EF FDRVF P + +F + S+L+QSA DG+NV
Sbjct: 511 LEPQKLILKGPNVESSLGHTYDRNYEFSFDRVFAPESDNSSVFEEISQLIQSAIDGYNVS 570
Query: 496 IFAYGQTGSGKTFTLIGNIESNPGIVPRAFKRIFEIAHEGNIK-YKTRLHCYMLELYNEK 672
IFAYGQTGSGKT+T+ S G++ + K IF K + +L LE+YNE
Sbjct: 571 IFAYGQTGSGKTYTM----SSQDGMIAMSIKHIFNYLSTLREKGWVYKLRGQFLEIYNET 626
Query: 673 LLDLMT-SDAVYSDKLEIKKD-THGMVIVPGAAIQTATTSDQLKELFLKGNSNRHIASTK 846
+ DL+ ++ + + K +I D V +I D + ++ + NR IA+TK
Sbjct: 627 IYDLLNKAEMLKNPKHDIHHDEKERRTTVDNVSIIDFNEEDTVYKMLNRAGENRFIAATK 686
Query: 847 MNSESSRSHLIVSIML 894
N SSRSH + + +
Sbjct: 687 ANERSSRSHTVFMLYI 702
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,239,465
Number of Sequences: 369166
Number of extensions: 1982437
Number of successful extensions: 6912
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6630
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)