Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_P02
(541 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49260|PLA2R_RABIT 180 kDa secretory phospholipase A2 re... 38 0.018
sp|O60449|LY75_HUMAN Lymphocyte antigen 75 precursor (DEC-2... 37 0.031
sp|P22897|MANR1_HUMAN Macrophage mannose receptor precursor... 37 0.040
sp|P23805|CONG_BOVIN Conglutinin precursor 35 0.089
sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precurs... 35 0.15
sp|P49259|PLA2R_BOVIN 180 kDa secretory phospholipase A2 re... 30 2.9
sp|Q66S63|MBL2_PANTR Mannose-binding protein C precursor (M... 30 3.7
sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2 30 3.7
sp|Q85BJ7|RK23_ANTFO Chloroplast 50S ribosomal protein L23 30 3.7
sp|P11226|MBL2_HUMAN Mannose-binding protein C precursor (M... 30 4.9
>sp|P49260|PLA2R_RABIT 180 kDa secretory phospholipase A2 receptor precursor (PLA2-R)
Length = 1458
Score = 37.7 bits (86), Expect = 0.018
Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 22/173 (12%)
Frame = +2
Query: 50 HCAAGGNLPDGFWDGENCDTSLGVLC-------------------YISGSLPAKETYTTS 172
HC + W NC+++L +C Y + P Y +
Sbjct: 327 HCGTFNSFMPRAWRSRNCESTLPYICKKYLNHVDDEIVEKDAWKYYATDCEPGWAPYHRN 386
Query: 173 TIEILPDVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPFWIDADDSKVLG 352
++ + T A+ C + +L+ I + + + T + + WI +
Sbjct: 387 CYKLQKEEKTWNEALHSCLSSNSTLIDIGSLAEVEFLVTLLGNENASETWIGLSSNTFPV 446
Query: 353 QTEYTSGGRTVYGRWMSSSRQ---QKDRCTIGLFQPNKVWKYVPCFNENVVVC 502
E+++G ++ W + Q + + + Q WK C + VC
Sbjct: 447 SFEWSNGSSVIFTNWHTLEPQIFPNRSQLCVSAEQSEGHWKVTDCEETHFYVC 499
>sp|O60449|LY75_HUMAN Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen) (gp200-MR6)
Length = 1722
Score = 37.0 bits (84), Expect = 0.031
Identities = 34/159 (21%), Positives = 59/159 (37%), Gaps = 24/159 (15%)
Frame = +2
Query: 74 PDGFWDGENCDTSL-GVLCY------------ISGSLPAKETYTTSTIEILPDVVTHRAA 214
P G W E C++ G +CY S PA + + I+ A
Sbjct: 1493 PKGTWKHEKCNSVKDGAICYKPTKSKKLSRLTYSSRCPAAKENGSRWIQYKGHCYKSDQA 1552
Query: 215 VQICAAKKK---------SLLKIQTEEINDMVFTYISER--ISVPFWIDADDSKVLGQTE 361
+ + KK +++ I+ E+ N V + E I++ W+ V
Sbjct: 1553 LHSFSEAKKLCSKHDHSATIVSIKDEDENKFVSRLMRENNNITMRVWLGLSQHSVDQSWS 1612
Query: 362 YTSGGRTVYGRWMSSSRQQKDRCTIGLFQPNKVWKYVPC 478
+ G + +W + S+ RC++ L N+ WK V C
Sbjct: 1613 WLDGSEVTFVKWENKSKSGVGRCSM-LIASNETWKKVEC 1650
>sp|P22897|MANR1_HUMAN Macrophage mannose receptor precursor (MMR) (CD206 antigen)
Length = 1456
Score = 36.6 bits (83), Expect = 0.040
Identities = 35/174 (20%), Positives = 61/174 (35%), Gaps = 30/174 (17%)
Frame = +2
Query: 5 YNKWGIGLPNKLTTQHCAAGGNLPDGFWDGENCDTSLGVLCYISGSLPAKETYTTSTIEI 184
Y W G P+ + C + + W+ C LG +C K+ TT +
Sbjct: 300 YLNWLPGSPSAEPGKSCVSLNPGKNAKWENLECVQKLGYIC--------KKGNTTLNSFV 351
Query: 185 LP---DVVTH-----------------------RAAVQICAAKKKSLLKIQTEEINDMVF 286
+P DV TH R A+ C + L I T E D +
Sbjct: 352 IPSESDVPTHCPSQWWPYAGHCYKIHRDEKKIQRDALTTCRKEGGDLTSIHTIEELDFII 411
Query: 287 TYISERISVPFWIDADDSKVLGQTEYTSGGRTVYGRWM----SSSRQQKDRCTI 436
+ + + WI +D K+ E++ G + +W+ S +++ C +
Sbjct: 412 SQLGYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLRGEPSHENNRQEDCVV 465
Score = 32.3 bits (72), Expect = 0.75
Identities = 35/182 (19%), Positives = 58/182 (31%), Gaps = 15/182 (8%)
Frame = +2
Query: 2 TYNKWGIGLPN-KLTTQHCAAGGNLPDGFWDGENCDTSLGVLCYISGSLPAKETYTTST- 175
T+ KW G P+ + Q DG+W C+ LG +C + E
Sbjct: 444 TFTKWLRGEPSHENNRQEDCVVMKGKDGYWADRGCEWPLGYICKMKSRSQGPEIVEVEKG 503
Query: 176 ------------IEILPDVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPF 319
I + T A Q C + L I+ + +++ R F
Sbjct: 504 CRKGWKKHHFYCYMIGHTLSTFAEANQTCNNENAYLTTIEDRYEQAFLTSFVGLRPEKYF 563
Query: 320 WIDADDSKVLGQTEYTSGGRTVYGRWMSSSRQQKDRC-TIGLFQPNKVWKYVPCFNENVV 496
W D + G ++T + W S +K C + +W + C +
Sbjct: 564 WTGLSDIQTKGTFQWTIEEEVRFTHWNSDMPGRKPGCVAMRTGIAGGLWDVLKCDEKAKF 623
Query: 497 VC 502
VC
Sbjct: 624 VC 625
>sp|P23805|CONG_BOVIN Conglutinin precursor
Length = 371
Score = 35.4 bits (80), Expect = 0.089
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 5/108 (4%)
Frame = +2
Query: 194 VVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPFWIDADDSKVLGQTEYTSG 373
V ++ A Q+C K L ++ N+ V T + ++ +D G+ Y +G
Sbjct: 265 VKSYSDAEQLCREAKGQLASPRSSAENEAV-TQMVRAQEKNAYLSMNDISTEGRFTYPTG 323
Query: 374 GRTVYGRWM-----SSSRQQKDRCTIGLFQPNKVWKYVPCFNENVVVC 502
VY W +S Q + C + +F P+ W VPC + +V+C
Sbjct: 324 EILVYSNWADGEPNNSDEGQPENC-VEIF-PDGKWNDVPCSKQLLVIC 369
>sp|Q61830|MANR1_MOUSE Macrophage mannose receptor 1 precursor (MMR)
Length = 1456
Score = 34.7 bits (78), Expect = 0.15
Identities = 34/171 (19%), Positives = 58/171 (33%), Gaps = 27/171 (15%)
Frame = +2
Query: 5 YNKWGIGLPNKLTTQHCAAGGNLPDGFWDGENCDTSLGVLCYISGSLPAKETYTTSTIEI 184
Y W G P+ + C + + W+ C LG +C T I
Sbjct: 300 YLNWLPGSPSSEPGKSCVSLNPGKNAKWENLECVQKLGYICK-----KGNNTLNPFIIPS 354
Query: 185 LPDVVT----------------HRA-------AVQICAAKKKSLLKIQTEEINDMVFTYI 295
DV T HR A+Q C + L I + E D +F+ +
Sbjct: 355 ASDVPTGCPNQWWPYAGHCYRIHREEKKIQKYALQACRKEGGDLASIHSIEEFDFIFSQL 414
Query: 296 SERISVPFWIDADDSKVLGQTEYTSGGRTVYGRWM----SSSRQQKDRCTI 436
+ WI +D K+ E++ G + +W+ S +++ C +
Sbjct: 415 GYEPNDELWIGLNDIKIQMYFEWSDGTPVTFTKWLPGEPSHENNRQEDCVV 465
Score = 34.3 bits (77), Expect = 0.20
Identities = 36/162 (22%), Positives = 54/162 (33%), Gaps = 20/162 (12%)
Frame = +2
Query: 5 YNKWGIGLPNKLTTQ------HCAA--GGNLPD-GFWDGENCDTSLGVLCYISG--SLPA 151
Y WG G P + C GGN + G W + CD+ G +C SLP
Sbjct: 1029 YTNWGKGYPGGRRSSLSYEDADCVVVIGGNSREAGTWMDDTCDSKQGYICQTQTDPSLPV 1088
Query: 152 KET---------YTTSTIEILPDVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISER 304
T Y S+ ++ + A C L I N + +
Sbjct: 1089 SPTTTPKDGFVTYGKSSYSLMKLKLPWHEAETYCKDHTSLLASILDPYSNAFAWMKMHP- 1147
Query: 305 ISVPFWIDADDSKVLGQTEYTSGGRTVYGRWMSSSRQQKDRC 430
+VP WI + + + +T R Y W + + K C
Sbjct: 1148 FNVPIWIALNSNLTNNEYTWTDRWRVRYTNWGADEPKLKSAC 1189
>sp|P49259|PLA2R_BOVIN 180 kDa secretory phospholipase A2 receptor precursor (PLA2-R)
Length = 1463
Score = 30.4 bits (67), Expect = 2.9
Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 22/173 (12%)
Frame = +2
Query: 50 HCAAGGNLPDGFWDGENCDTSLGVLC-------------------YISGSLPAKETYTTS 172
HC W +C+++L +C Y + P + +
Sbjct: 329 HCGTFNAFMPKAWKSRDCESTLPYVCKKYLNPTDHGVVEKDAWKYYATHCEPGWNPHNRN 388
Query: 173 TIEILPDVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPFWIDADDSKVLG 352
++ + T A+Q C + L I + + + T + + + WI K+
Sbjct: 389 CYKLQKEKKTWNEALQSCQSNNSVLTDITSLAEVEFLVTLLGDENASETWIGLSSHKIPV 448
Query: 353 QTEYTSGGRTVYGRWMSSSRQ---QKDRCTIGLFQPNKVWKYVPCFNENVVVC 502
E+++G + W + + + + Q WK C +C
Sbjct: 449 SFEWSNGSSVTFTNWHTLEPHIFPNRSQLCVSAEQSEGHWKVKNCEETLFYLC 501
>sp|Q66S63|MBL2_PANTR Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 30.0 bits (66), Expect = 3.7
Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +2
Query: 191 DVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPFWIDADDSKVLGQTEYTS 370
+++T +C + S+ + N V I E ++ D K GQ +
Sbjct: 144 EIMTFEKVKALCVKFQASVATPRNAAENGAVRNLIKEEA----FLGITDEKTEGQFVDLT 199
Query: 371 GGRTVYGRWMS---SSRQQKDRCTIGLFQPNKVWKYVPCFNENVVVC 502
G R Y W ++ + C + L N W VPC ++ VC
Sbjct: 200 GNRLTYTNWNEGEPNNAGSDEDCVLLL--KNGQWNDVPCSTSHLAVC 244
>sp|Q9HGN1|GCN2_SCHPO Serine/threonine-protein kinase gcn2
Length = 1576
Score = 30.0 bits (66), Expect = 3.7
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = +2
Query: 242 SLLKIQTEEIN--DMVFTYISERISVPFWIDADDSKVLGQTEY 364
+L+K +++EI+ D VF + RIS P+W D + + + EY
Sbjct: 250 TLVKPESKEISLQDCVFLLRTVRISTPYWSTEDGKREIQELEY 292
>sp|Q85BJ7|RK23_ANTFO Chloroplast 50S ribosomal protein L23
Length = 91
Score = 30.0 bits (66), Expect = 3.7
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 146 VDSQKYNTILPNWYRNFLHPKIRRVNFHQPHNVELSIY*VNQYPIYYK 3
VD + T + W ++F K+ +N H+P + I V YP+ YK
Sbjct: 26 VDLKASKTEIKQWIQDFFKVKVVAMNSHRPPKKKKRIGPVLGYPVRYK 73
>sp|P11226|MBL2_HUMAN Mannose-binding protein C precursor (MBP-C) (MBP1) (Mannan-binding
protein) (Mannose-binding lectin)
Length = 248
Score = 29.6 bits (65), Expect = 4.9
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 3/107 (2%)
Frame = +2
Query: 191 DVVTHRAAVQICAAKKKSLLKIQTEEINDMVFTYISERISVPFWIDADDSKVLGQTEYTS 370
+++T +C + S+ + N + I E ++ D K GQ +
Sbjct: 144 EIMTFEKVKALCVKFQASVATPRNAAENGAIQNLIKEEA----FLGITDEKTEGQFVDLT 199
Query: 371 GGRTVYGRWMS---SSRQQKDRCTIGLFQPNKVWKYVPCFNENVVVC 502
G R Y W ++ + C + L N W VPC ++ VC
Sbjct: 200 GNRLTYTNWNEGEPNNAGSDEDCVLLL--KNGQWNDVPCSTSHLAVC 244
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,508,852
Number of Sequences: 369166
Number of extensions: 1416055
Number of successful extensions: 3533
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3532
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3685690500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)