Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O18
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondri... 272 1e-72
sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial... 269 8e-72
sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondri... 267 2e-71
sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein ho... 266 7e-71
sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondri... 265 2e-70
sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondri... 259 8e-69
sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precu... 250 4e-66
sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondria... 243 5e-64
sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial prec... 238 1e-62
sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial prec... 235 1e-61
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 272 bits (695), Expect = 1e-72
Identities = 140/281 (49%), Positives = 192/281 (68%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
+V S+VP LE+ N+ + PL+IIAEDVD E Q+ AVKAPGFGDNR
Sbjct: 253 SVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQ 312
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L+D+A +TG +FG E + +ED+ LG+ E+ V++DD +++ G G +I++RI+
Sbjct: 313 LKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGEKAQIEKRIQ 372
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ +QL+I TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR
Sbjct: 373 EITEQLEITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAV 432
Query: 543 XEGIVVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV+GGG ALLRCIP LD L S D++IG+E++K AL+ P TIA NAG+ G ++V+
Sbjct: 433 EEGIVLGGGCALLRCIPALDSLKPSNEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVE 492
Query: 720 KLLKLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
K+L+ IGYDA ++V+M E GIIDP KVVRTAL DAA
Sbjct: 493 KILQSSSEIGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAA 533
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (HSP-65)
Length = 573
Score = 269 bits (687), Expect = 8e-72
Identities = 138/281 (49%), Positives = 190/281 (67%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
+V S+VP LE+ N+ + PL+IIAEDVD E Q+ AVKAPGFGDNR
Sbjct: 253 SVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQ 312
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L+D+A +TG +FG E + +ED+ LG+ E+ V++DD +++ G G I++RI+
Sbjct: 313 LKDMAIATGGAVFGEEGLNLNLEDVQAHDLGKVGEVIVTKDDAMLLKGKGDKAHIEKRIQ 372
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ +QL I TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR
Sbjct: 373 EITEQLDITTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAV 432
Query: 543 XEGIVVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV+GGG ALLRCIP LD L + D++IG+E++K AL+ P TIA NAG+ G ++V+
Sbjct: 433 EEGIVLGGGCALLRCIPALDSLKPANEDQKIGIEIIKRALKIPAMTIAKNAGVEGSLIVE 492
Query: 720 KLLKLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
K+L+ +GYDA ++V+M E GIIDP KVVRTAL DAA
Sbjct: 493 KILQSSSEVGYDAMLGDFVNMVEKGIIDPTKVVRTALLDAA 533
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1) (P60 lymphocyte
protein) (HuCHA60)
Length = 573
Score = 267 bits (683), Expect = 2e-71
Identities = 135/281 (48%), Positives = 191/281 (67%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
++ S+VP LE+ N+ + PL+IIAEDVD E Q+ AVKAPGFGDNR
Sbjct: 253 SIQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQ 312
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L+D+A +TG +FG E T+ +ED+ LG+ E+ V++DD +++ G G +I++RI+
Sbjct: 313 LKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLKGKGDKAQIEKRIQ 372
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ +QL + TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR
Sbjct: 373 EIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAV 432
Query: 543 XEGIVVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV+GGG ALLRCIP LD L + D++IG+E++K L+ P TIA NAG+ G ++V+
Sbjct: 433 EEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVE 492
Query: 720 KLLKLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
K+++ +GYDA ++V+M E GIIDP KVVRTAL DAA
Sbjct: 493 KIMQSSSEVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAA 533
>sp|Q9VMN5|CH60C_DROME Probable 60 kDa heat shock protein homolog 2, mitochondrial precursor
(Hsp60) (60 kDa chaperonin) (CPN60) (Heat shock protein
60) (HSP-60)
Length = 576
Score = 266 bits (679), Expect = 7e-71
Identities = 134/278 (48%), Positives = 193/278 (69%), Gaps = 1/278 (0%)
Frame = +3
Query: 12 SLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEILQD 191
S+VP LEL N+Q+ PL+IIAED+++E Q+CAVKAPGFGDNR E L D
Sbjct: 256 SIVPALELANAQRKPLVIIAEDLEAEALSTLVVNRLKVGLQVCAVKAPGFGDNRKENLMD 315
Query: 192 IATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIEMLE 371
+A +TG +FG E +++ED+ + GR E+ VS+DDT+++ G G ++++R+E L
Sbjct: 316 MAVATGGIVFGDEANMVRLEDIKMSDFGRVGEVVVSKDDTMLLKGKGQKAEVEKRVEGLR 375
Query: 372 DQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEG 551
+ ++ TS+YE+E+++ERL++LS GVA+++VGGSS+VEV+E+ DR EG
Sbjct: 376 EAIKESTSSYEKEKMQERLARLSSGVALLRVGGSSDVEVSEKKDRVIDALNATRAAVEEG 435
Query: 552 IVVGGGLALLRCIPVL-DVLNVSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLL 728
IV GGG ALLRCI L D+ + D+ +G+E+++ AL+ PC TIA NAG++G +VV K+
Sbjct: 436 IVPGGGTALLRCIQKLNDLKGANEDQNMGIEIIRRALRMPCLTIAKNAGVDGAMVVAKVE 495
Query: 729 KLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
LDG+ GYDA EY +M E GIIDP KVVRTA++DAA
Sbjct: 496 ILDGDYGYDALKGEYGNMIERGIIDPTKVVRTAISDAA 533
>sp|Q5NVM5|CH60_PONPY 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
Length = 573
Score = 265 bits (676), Expect = 2e-70
Identities = 135/281 (48%), Positives = 190/281 (67%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
+V S+VP LE+ N+ + PL+IIAEDVD E Q+ AVKAPGFGDNR
Sbjct: 253 SVQSIVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQ 312
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L+D+A +TG +FG E T+ +ED+ LG+ E+ V++DD +++ G G +I++RI+
Sbjct: 313 LKDMAIATGGAVFGEEGLTLNLEDVQPHDLGKVGEVIVTKDDAMLLEGKGDKAQIEKRIQ 372
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ +QL + TS YE+E++ ERL+KLSDGVAV+KVGG+S+VEVNE+ DR
Sbjct: 373 EIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAA 432
Query: 543 XEGIVVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV+GGG ALLRCIP LD L + D++IG+E++K L+ P TIA NAG+ G ++V+
Sbjct: 433 EEGIVLGGGCALLRCIPALDSLTPANEDQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVE 492
Query: 720 KLLKLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
K+++ +GYDA ++V+M GIIDP KVVRTAL DAA
Sbjct: 493 KIMQSSSEVGYDAMVGDFVNMVGKGIIDPTKVVRTALLDAA 533
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial precursor (Hsp60) (60 kDa
chaperonin) (CPN60) (Heat shock protein 60) (HSP-60)
(Mitochondrial matrix protein P1)
Length = 573
Score = 259 bits (661), Expect = 8e-69
Identities = 129/281 (45%), Positives = 191/281 (67%), Gaps = 1/281 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
+V S++P LEL N+Q+ PL+IIAED+D E Q+ AVKAPGFGDNR
Sbjct: 249 SVQSIIPALELANAQRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKST 308
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L D+A ++G +FG + + +++ED+ + LG+ E+ +++DDTL++ G G + + RR
Sbjct: 309 LTDMAIASGGIVFGDDADLVKLEDVKVSDLGQVGEVVITKDDTLLLKGKGKKDDVLRRAN 368
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
++DQ++ TS YE+E+++ERL++L+ GVA+++VGGSSEVEVNE+ DR
Sbjct: 369 QIKDQIEDTTSEYEKEKLQERLARLASGVALLRVGGSSEVEVNEKKDRVHDALNATRAAV 428
Query: 543 XEGIVVGGGLALLRCIPVLD-VLNVSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV GGG ALLRCI L+ V + D+++G+E+++ AL+ PC TIA NAG++G +VV
Sbjct: 429 EEGIVPGGGTALLRCIEKLEGVETTNEDQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVA 488
Query: 720 KLLKLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
K+ G+ GYDA EY ++ E GIIDP KVVRTA+TDA+
Sbjct: 489 KVENQAGDYGYDALKGEYGNLIEKGIIDPTKVVRTAITDAS 529
>sp|P25420|CH63_HELVI 63 kDa chaperonin, mitochondrial precursor (p63)
Length = 569
Score = 250 bits (638), Expect = 4e-66
Identities = 130/277 (46%), Positives = 182/277 (65%), Gaps = 1/277 (0%)
Frame = +3
Query: 15 LVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEILQDI 194
+VP LEL NSQ+ PL+IIAED D E + AVKAPGFG+ R L D+
Sbjct: 260 VVPALELANSQKKPLVIIAEDYDGEPLSVLVVNKLKIGLPVVAVKAPGFGEYRTNALLDM 319
Query: 195 ATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIEMLED 374
A +TG +F + +++ED E G+ E+ +++D TL++ G G +I++RI+ +++
Sbjct: 320 AAATGG-VFEDDTNLVRLEDCQAESFGQVGEVIITKDSTLLLKGKGDPNEIKQRIDQIKE 378
Query: 375 QLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXXEGI 554
+L+ TSNY+RER+ +RL +L GVAV+ +GG SEVEVNE+ DR EGI
Sbjct: 379 ELETATSNYDRERLIDRLGRLQSGVAVLLIGGCSEVEVNEKKDRVNDALNATRAAVEEGI 438
Query: 555 VVGGGLALLRCIPVLDVLN-VSGDEQIGLEVMKTALQSPCYTIATNAGINGDIVVDKLLK 731
V GGG ALLRCIP LD+L + D++IG+ ++K AL++PC TIA+NAG +G +VV K+
Sbjct: 439 VPGGGAALLRCIPALDLLKPANKDQEIGVSIIKKALRTPCITIASNAGFDGAVVVSKVED 498
Query: 732 LDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
+ GYDA N+EYV+M E GIIDP KVVR ALTDA+
Sbjct: 499 MGPEYGYDALNNEYVNMIEKGIIDPTKVVRRALTDAS 535
>sp|P50140|CH60_CAEEL Chaperonin homolog HSP60, mitochondrial precursor (Heat shock protein
60) (HSP-60)
Length = 568
Score = 243 bits (620), Expect = 5e-64
Identities = 128/281 (45%), Positives = 180/281 (64%), Gaps = 2/281 (0%)
Frame = +3
Query: 6 VLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEIL 185
V +VP LEL N + PL+IIAEDVD E Q+ A+KAPGFGDNR L
Sbjct: 245 VQDIVPALELANKLRRPLVIIAEDVDGEALTTLVLNRLKVGLQVVAIKAPGFGDNRKNTL 304
Query: 186 QDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIEM 365
+D+ +TGA +FG + I++ED+ LG E+ +++DDTL++ G G +I++RIE
Sbjct: 305 KDMGIATGATIFGDDSNLIKIEDITANDLGEVDEVTITKDDTLLLRGRGDQTEIEKRIEH 364
Query: 366 LEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXXX 545
+ D+++ TS+YE+E++ ERL+KLS GVAV+K+GG SEVEV E+ DR
Sbjct: 365 ITDEIEQSTSDYEKEKLNERLAKLSKGVAVLKIGGGSEVEVGEKKDRVTDALCATRAAVE 424
Query: 546 EGIVVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVDK 722
EGIV GGG+ALLR + L + D+QIG+ ++K AL P TI NAG+ ++D+
Sbjct: 425 EGIVPGGGVALLRSLTALKNYKAANEDQQIGVNIVKKALTQPIATIVKNAGLEPSSIIDE 484
Query: 723 LL-KLDGNIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
+ + + GYDA N ++VDMFE+GIIDP KVVRTAL DA+
Sbjct: 485 VTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQDAS 525
>sp|Q05046|CH62_CUCMA Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 575
Score = 238 bits (608), Expect = 1e-62
Identities = 128/282 (45%), Positives = 191/282 (67%), Gaps = 2/282 (0%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
++ S+V VLEL +Q PLLI++EDV+S+ ++CA+KAPGFG+NR
Sbjct: 260 SINSVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKAG 319
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
L D+A TG L +EE + +E + L+ LG K+I +S+DDT+I+ G G + I+ R E
Sbjct: 320 LHDLAVLTGGQLI-TEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKSIEERCE 378
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ +++ TS+Y++E+++ERL+KLS GVAV+K+GG+SE EV E+ DR
Sbjct: 379 QIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAV 438
Query: 543 XEGIVVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV GGG+ALL LD L+ + D++IG+++++ AL++P +TIA+NAG+ G +VV
Sbjct: 439 EEGIVPGGGVALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVG 498
Query: 720 KLLKLDG-NIGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
KLL+ D ++GYDA EYVDM ++GIIDP+KV+RTAL DAA
Sbjct: 499 KLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTALVDAA 540
>sp|Q43298|CH62_MAIZE Chaperonin CPN60-2, mitochondrial precursor (HSP60-2)
Length = 576
Score = 235 bits (599), Expect = 1e-61
Identities = 130/283 (45%), Positives = 190/283 (67%), Gaps = 3/283 (1%)
Frame = +3
Query: 3 NVLSLVPVLELINSQQLPLLIIAEDVDSEXXXXXXXXXXXXXXQICAVKAPGFGDNRIEI 182
N+ ++V VLE+ +Q PLLI+AEDV+SE ++CAVKAPGFG+NR
Sbjct: 262 NMHAVVKVLEMALKKQRPLLIVAEDVESEALGTLIINKLRAGIKVCAVKAPGFGENRKAN 321
Query: 183 LQDIATSTGAFLFGSEEETIQMEDMVLEHLGRAKEICVSRDDTLIVGGNGTLEKIQRRIE 362
LQD+A TG + +EE + +E++ LG K++ VS+DDT+I+ G G + I+ R +
Sbjct: 322 LQDLAILTGGEVI-TEELGMNLENVEPHMLGSCKKVTVSKDDTVILDGAGDKKSIEERAD 380
Query: 363 MLEDQLQIVTSNYERERVKERLSKLSDGVAVIKVGGSSEVEVNERTDRYXXXXXXXXXXX 542
+ ++ TS+Y++E+++ERL+KLS GVAV+K+GG+SE EV E+ DR
Sbjct: 381 QIRSAVENSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAV 440
Query: 543 XEGIVVGGGLALLRCIPVLDVLNVSG-DEQIGLEVMKTALQSPCYTIATNAGINGDIVVD 719
EGIV GGG+ALL LD L + D++IG+++++ AL++P +TIA+NAG+ G +VV
Sbjct: 441 EEGIVPGGGVALLYASKELDKLQTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVG 500
Query: 720 KLLKLDGN--IGYDAFNDEYVDMFESGIIDPVKVVRTALTDAA 842
KLL+ GN +GYDA DEYVDM ++GIIDP+KV+RTAL DAA
Sbjct: 501 KLLE-QGNTDLGYDAAKDEYVDMVKAGIIDPLKVIRTALVDAA 542
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,691,491
Number of Sequences: 369166
Number of extensions: 1881275
Number of successful extensions: 6709
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5887
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)