Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O15
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP... 378 e-104
sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP... 376 e-104
sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cy... 364 e-100
sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cy... 362 e-100
sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cy... 362 e-100
sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cy... 362 e-100
sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cyto... 361 1e-99
sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mi... 360 2e-99
sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cy... 358 9e-99
sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mi... 356 4e-98
>sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 643
Score = 378 bits (970), Expect = e-104
Identities = 176/262 (67%), Positives = 208/262 (79%), Gaps = 1/262 (0%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FV+CVHSVG P+P KVINHWPCNPEKT+IAH P ER KKCFAL
Sbjct: 207 FVRCVHSVGQPKPVATKVINHWPCNPEKTIIAHRPAEREIWSFGSGYGGNSLLGKKCFAL 266
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA I YDEGWMAEHMLIM VT+PKGEE+F+AAAFPSACGKTN+AMLEP++PGWKV+V+
Sbjct: 267 RIAMNIGYDEGWMAEHMLIMGVTSPKGEERFVAAAFPSACGKTNLAMLEPTIPGWKVRVI 326
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+F G L AINPE GFFGVAPGT++KTNP AM +FQ+N+IFTNVAET+DG Y
Sbjct: 327 GDDIAWMKFGADGRLYAINPEYGFFGVAPGTSHKTNPMAMASFQENTIFTNVAETADGEY 386
Query: 542 YWEGLEDEV-DKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKG 718
+WEGLE EV + +++ +WLG +GD+SK AAH NSRF PA QCPIIHP WE P+G
Sbjct: 387 FWEGLEHEVKNPKVDMINWLGEPWHIGDESK--AAHPNSRFTAPAGQCPIIHPDWEKPEG 444
Query: 719 VPISAIVFGGRRPEGIPLIMQA 784
VPI AI+FGGRRPEG+PL+ ++
Sbjct: 445 VPIDAIIFGGRRPEGVPLVFES 466
>sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 619
Score = 376 bits (966), Expect = e-104
Identities = 177/261 (67%), Positives = 204/261 (78%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FV+C+HSVG PRP ++VINHWPCNPE+ LIAH P ER KK AL
Sbjct: 184 FVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPAEREIWSFGSGYGGNSLLGKKMLAL 243
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA IA DEGWMAEHMLIM VT P G+E FIAAAFPSACGKTN+AMLEP+LPGWKV+ V
Sbjct: 244 RIASNIAKDEGWMAEHMLIMGVTRPDGKEHFIAAAFPSACGKTNLAMLEPALPGWKVRCV 303
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+F E G L AINPE GFFGVAPGT+ KTNP A+ TFQKNSIFTNV ET++G Y
Sbjct: 304 GDDIAWMKFGEDGRLYAINPEYGFFGVAPGTSKKTNPMAVATFQKNSIFTNVGETANGEY 363
Query: 542 YWEGLEDEV-DKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKG 718
+WEGLEDE+ DKN+++ +WLG K ++GD GL AH NSRF PASQCPIIHP+WE PKG
Sbjct: 364 FWEGLEDEIKDKNVDMINWLGEKWRIGD--PGLCAHPNSRFAAPASQCPIIHPEWESPKG 421
Query: 719 VPISAIVFGGRRPEGIPLIMQ 781
VPI AI+FGGRRP G+PL+ +
Sbjct: 422 VPIDAIIFGGRRPAGVPLVFE 442
>sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 364 bits (934), Expect = e-100
Identities = 165/263 (62%), Positives = 201/263 (76%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
F+KC+HSVGCP P + ++N+W CNPE TLIAHLPD R KKCFAL
Sbjct: 189 FIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA R+A +EGW+AEHMLI+ +TNP+G++K++AAAFPSACGKTN+AM+ PSLPGWKV+ V
Sbjct: 249 RIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPSLPGWKVECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT QKN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG+++ + + ITSW + + D AH NSRFC PASQCPII P WE P+GV
Sbjct: 369 YWEGIDEPLAPGVTITSWKNKEWRPQDAEP--CAHPNSRFCTPASQCPIIDPAWESPEGV 426
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI I+FGGRRPEG+PL+ +A +
Sbjct: 427 PIEGIIFGGRRPEGVPLVYEALS 449
>sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 362 bits (928), Expect = e-100
Identities = 169/264 (64%), Positives = 199/264 (75%), Gaps = 1/264 (0%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FVKC+HSVGCP P +IN+WPCNPE TLIAHLPD R KKCFAL
Sbjct: 189 FVKCLHSVGCPLPLKEPLINNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA RIA +EGW+AEHMLI+ +TNP+GE+K+ AAAFPSACGKTN+AM+ PS PGWK++ V
Sbjct: 249 RIASRIAKEEGWLAEHMLILGITNPEGEKKYFAAAFPSACGKTNLAMMNPSRPGWKIECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FDE G LRAINPE GFFGVAPGT+ KTNPNA+KT KN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDELGNLRAINPENGFFGVAPGTSIKTNPNAIKTIFKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKG-LAAHANSRFCCPASQCPIIHPKWEDPKG 718
YWEG+++ + + +TSW K K G AH NSRFC PASQCPI+ P WE P+G
Sbjct: 369 YWEGIDEPLPPGVTLTSW---KNKDWTPDNGEPCAHPNSRFCTPASQCPIMDPAWESPEG 425
Query: 719 VPISAIVFGGRRPEGIPLIMQAFN 790
VPI I+FGGRRP G+PL+ +AFN
Sbjct: 426 VPIEGIIFGGRRPAGVPLVYEAFN 449
>sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 362 bits (928), Expect = e-100
Identities = 165/263 (62%), Positives = 199/263 (75%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FVKC+HSVGCP P + ++N+WPCNPE TLIAHLPD R KKCFAL
Sbjct: 189 FVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
R+A R+A +EGW+AEHMLI+ +TNP+GE+K++AAAFPSACGKTN+AM+ PSLPGWKV+ V
Sbjct: 249 RMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT QKN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG+++ + + ITSW + D AH NSRFC PASQCPII WE P+GV
Sbjct: 369 YWEGIDEPLASGVTITSWKNKEWSSEDGEP--CAHPNSRFCTPASQCPIIDAAWESPEGV 426
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI I+FGGRRP G+PL+ +A +
Sbjct: 427 PIEGIIFGGRRPAGVPLVYEALS 449
>sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 362 bits (928), Expect = e-100
Identities = 165/263 (62%), Positives = 199/263 (75%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FVKC+HSVGCP P + ++N+WPCNPE TLIAHLPD R KKCFAL
Sbjct: 189 FVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
R+A R+A +EGW+AEHMLI+ +TNP+GE+K++AAAFPSACGKTN+AM+ PSLPGWKV+ V
Sbjct: 249 RMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT QKN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG+++ + + ITSW + D AH NSRFC PASQCPII WE P+GV
Sbjct: 369 YWEGIDEPLASGVTITSWKNKEWSPEDGEP--CAHPNSRFCTPASQCPIIDAAWESPEGV 426
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI I+FGGRRP G+PL+ +A +
Sbjct: 427 PIEGIIFGGRRPAGVPLVYEALS 449
>sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 361 bits (927), Expect = 1e-99
Identities = 163/263 (61%), Positives = 201/263 (76%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
F+KC+HSVGCP P + ++N+W CNPE TLIAHLPD R KKCFAL
Sbjct: 189 FIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA R+A +EGW+AEHMLI+ +TNP+G++K++AAAFPSACGKTN+AM+ P+LPGWKV+ V
Sbjct: 249 RIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT QKN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG+++ + + ITSW + + D+ AH NSRFC PASQCPII P WE P+GV
Sbjct: 369 YWEGIDEPLAPGVTITSWKNKEWRPQDEEP--CAHPNSRFCTPASQCPIIDPAWESPEGV 426
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI I+FGGRRP G+PL+ +A +
Sbjct: 427 PIEGIIFGGRRPAGVPLVYEALS 449
>sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 360 bits (924), Expect = 2e-99
Identities = 164/263 (62%), Positives = 197/263 (74%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
F+KC+HSVG P + WPCNPEKTLI H+PD+R KKCFAL
Sbjct: 207 FIKCLHSVGQPLTGHGDPVGQWPCNPEKTLIGHVPDQREIVSFGSGYGGNSLLGKKCFAL 266
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA R+A DEGW+AEHMLI+ +TNP G+++++AAAFPSACGKTN+AM+ P+LPGWKV+ V
Sbjct: 267 RIASRLARDEGWLAEHMLILGITNPAGKKRYVAAAFPSACGKTNLAMMRPALPGWKVECV 326
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWMRFD G+LRAINPE GFFGVAPGT+ TNPNAM T Q N++FTNVAETSDG
Sbjct: 327 GDDIAWMRFDSEGQLRAINPENGFFGVAPGTSAATNPNAMATIQSNTLFTNVAETSDGGV 386
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG++ + + ITSWLG K GDK AH NSRFC PA QCPI+ P WE P+GV
Sbjct: 387 YWEGIDQPLPPGVTITSWLGKPWKPGDKEP--CAHPNSRFCVPARQCPIMDPAWEAPEGV 444
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI AI+FGGRRP+G+PL+ +AFN
Sbjct: 445 PIDAIIFGGRRPKGVPLVYEAFN 467
>sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 358 bits (919), Expect = 9e-99
Identities = 162/263 (61%), Positives = 199/263 (75%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FVKC+HSVGCP P + ++N+W CNPE TLIAHLPD R KKCFAL
Sbjct: 189 FVKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFAL 248
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
R+A R+A +EGW+AEHMLI+ +TNPKG++K+ AAAFPSACGKTN+AM+ P+LPGWKV+ V
Sbjct: 249 RMASRLAKEEGWLAEHMLILGITNPKGQKKYFAAAFPSACGKTNLAMMNPTLPGWKVECV 308
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWM+FD+ G LRAINPE GFFGVAPGT+ +TNPNA+KT QKN+IFTNVAETSDG
Sbjct: 309 GDDIAWMKFDQQGNLRAINPENGFFGVAPGTSVRTNPNAIKTIQKNTIFTNVAETSDGGV 368
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG++ + +++ SW G + D AH NSRFC PASQCPII P WE P+GV
Sbjct: 369 YWEGIDQPLAARVKLISWKGKEWDPKDGEP--CAHPNSRFCTPASQCPIIDPDWESPEGV 426
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI I+FGGRRP G+PL+ +A +
Sbjct: 427 PIEGIIFGGRRPVGVPLVYEALS 449
>sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 356 bits (914), Expect = 4e-98
Identities = 164/263 (62%), Positives = 195/263 (74%)
Frame = +2
Query: 2 FVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXXXXXXXXXXXXKKCFAL 181
FVKC+HSVG P + ++ WPCNPEKTLI H+PD+R KKCFAL
Sbjct: 207 FVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHVPDQREIISFGSGYGGNSLLGKKCFAL 266
Query: 182 RIAGRIAYDEGWMAEHMLIMSVTNPKGEEKFIAAAFPSACGKTNMAMLEPSLPGWKVQVV 361
RIA R+A DEGW+AEHMLI+ +T+P G++ AAAFPSACGKTN+AM+ P+LPGWKV+ V
Sbjct: 267 RIASRLARDEGWLAEHMLILGITSPAGKKALCAAAFPSACGKTNLAMMRPALPGWKVECV 326
Query: 362 GDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQKNSIFTNVAETSDGSY 541
GDDIAWMRFD G LRAINPE GFFGVAPGT+ TNPNAM T Q N+IFTNVAETSDG
Sbjct: 327 GDDIAWMRFDSEGRLRAINPENGFFGVAPGTSATTNPNAMATIQSNTIFTNVAETSDGGV 386
Query: 542 YWEGLEDEVDKNLEITSWLGVKMKVGDKSKGLAAHANSRFCCPASQCPIIHPKWEDPKGV 721
YWEG++ + + +TSWLG K GDK AH NSRFC PA QCPI+ P WE P+GV
Sbjct: 387 YWEGIDQPLPPGVTVTSWLGKPWKPGDKEP--CAHPNSRFCAPARQCPIMDPAWEAPEGV 444
Query: 722 PISAIVFGGRRPEGIPLIMQAFN 790
PI AI+FGGRRP+G+PL+ +AFN
Sbjct: 445 PIDAIIFGGRRPKGVPLVYEAFN 467
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,059,102
Number of Sequences: 369166
Number of extensions: 2127556
Number of successful extensions: 5525
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5379
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)