Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O14
(678 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P36059|YKP1_YEAST Protein YKL151c 139 5e-33
sp|P32740|YNH2_CAEEL Hypothetical protein R107.2 in chromos... 124 2e-28
sp|P74217|Y1433_SYNY3 Hypothetical protein sll1433 74 3e-13
sp|P31806|YJEF_ECOLI Hypothetical protein yjeF 68 3e-11
sp|O06250|Y3433_MYCTU Hypothetical protein Rv3433c/MT3539 57 4e-08
sp|P96051|YFOL_STRTR Hypothetical protein in folD-pbp2B int... 54 5e-07
sp|Q58981|Y1586_METJA Hypothetical protein MJ1586 52 2e-06
sp|P37391|Y373_MYCLE Hypothetical protein ML0373 46 1e-04
sp|Q9WZR0|PYRG_THEMA CTP synthase (UTP--ammonia ligase) (CT... 34 0.40
sp|P36021|MOT8_HUMAN Monocarboxylate transporter 8 (MCT 8) ... 31 3.4
>sp|P36059|YKP1_YEAST Protein YKL151c
Length = 337
Score = 139 bits (351), Expect = 5e-33
Identities = 91/222 (40%), Positives = 124/222 (55%), Gaps = 24/222 (10%)
Frame = +1
Query: 79 KNSIPPLDAIKYKGNAG-KICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPII 255
K IPPL +KG +G ++C+IGG ++YTGAPYFSA + L G DL HVIC +A +I
Sbjct: 16 KRCIPPLLPKFHKGQSGGRVCIIGGCEDYTGAPYFSANATALMGCDLTHVICEYNAGTVI 75
Query: 256 KSYSPELIVHPIL-----------GTNRDECCKWLDKMHAVIIGPGLGRD--YIQESMDL 396
KSY+P L+VHP L R + LD++H V+IGPGLGRD ++ D+
Sbjct: 76 KSYTPNLMVHPYLRMSNTKLDVDMDEQRKKINSLLDRIHVVVIGPGLGRDPLMLKSIKDI 135
Query: 397 IRYVKTQ---DIPLIVDADGLHLICLDPSIVSGYK-----KAILTPNINESKMLFEKVTK 552
IRY+ + IPL++DADGL L+ D + K + ILTPN+ E K L + + K
Sbjct: 136 IRYILEKHEGKIPLVIDADGLFLVTQDSEVKEMLKSYPKGRVILTPNVVEFKRLCDAIGK 195
Query: 553 GTTFNFDMSVCSQIACSLGNITIVAKGIHDMI--TDGTKDAI 672
+ +M S IA L N +V KG D I D KD +
Sbjct: 196 KGDSHSEMG--SLIAQEL-NCIVVEKGQSDKIFSPDSEKDML 234
>sp|P32740|YNH2_CAEEL Hypothetical protein R107.2 in chromosome III
Length = 307
Score = 124 bits (311), Expect = 2e-28
Identities = 78/199 (39%), Positives = 107/199 (53%), Gaps = 12/199 (6%)
Frame = +1
Query: 88 IPPLDAIKYKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYS 267
+P L KG+ GK+ VIGGS EYTGAPYF+A SA GADL+H+ C DAA +IK YS
Sbjct: 8 LPKLTPHLRKGDCGKMGVIGGSLEYTGAPYFAASSASRLGADLIHIFCDPDAAQVIKGYS 67
Query: 268 PELIVHPILGTNRDECCKWLDKMHAVIIGPGLGR--DYIQESMDLIRYVKTQDIPLIVDA 441
P+LIVHP G + L +M A++IGPGLGR + +L +V+ +D+P ++D
Sbjct: 68 PDLIVHP--GMTANSIIPKLSRMDAIVIGPGLGRNPNIWPLMQELFEFVRNRDVPFVIDG 125
Query: 442 DGLHLICLD-PSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDM------SVCSQIAC 600
DGL + +LTPNI E F ++ K D+ S +A
Sbjct: 126 DGLWFVSEHIEKFPRQMSATVLTPNIVE----FSRLCKSALGEEDVLNVRNNSQLQHLAA 181
Query: 601 SLG---NITIVAKGIHDMI 648
L N+TI KG D++
Sbjct: 182 ELSRKMNVTIYLKGEVDLV 200
>sp|P74217|Y1433_SYNY3 Hypothetical protein sll1433
Length = 524
Score = 74.3 bits (181), Expect = 3e-13
Identities = 56/192 (29%), Positives = 88/192 (45%), Gaps = 7/192 (3%)
Frame = +1
Query: 106 IKYKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVH 285
+ +K G + +I GS++Y G + + A SG +V V P ++ S PE++V
Sbjct: 245 VTHKYQQGHLLLICGSQQYAGGALLTTLGARASGVGMVTVAVPMGIKALLHSQCPEVLVK 304
Query: 286 PILGTNRDECCKW----LDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLH 453
+L T L + AV +GPGLG D L+ V + + PLI+DADGL+
Sbjct: 305 GLLETPSGAIAGLGNLDLSRYSAVALGPGLGSDV----GPLVEEVLSVNCPLILDADGLN 360
Query: 454 LIC---LDPSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIV 624
+ L P + +LTP+ E K LF + +G D Q A ++ T++
Sbjct: 361 QLAQQQLLPLLAVRTAPTVLTPHGGEFKRLFPDIDQG-----DRLTAVQTAAAMCQATVL 415
Query: 625 AKGIHDMITDGT 660
KG +I T
Sbjct: 416 LKGAKTVIASPT 427
>sp|P31806|YJEF_ECOLI Hypothetical protein yjeF
Length = 515
Score = 67.8 bits (164), Expect = 3e-11
Identities = 46/165 (27%), Positives = 83/165 (50%)
Frame = +1
Query: 40 MRNLPSKALLMWMKNSIPPLDAIKYKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLV 219
++ ++ L W+K P +KG+ G++ +IGG GA + +AL +GA LV
Sbjct: 230 IQRFSAEQLSHWLK----PRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEAALRAGAGLV 285
Query: 220 HVICPQDAAPIIKSYSPELIVHPILGTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLI 399
V+ + + + PEL+VH + + E +W D V+IGPGLG+ + +
Sbjct: 286 RVLTRSENIAPLLTARPELMVHELTMDSLTESLEWAD---VVVIGPGLGQQ--EWGKKAL 340
Query: 400 RYVKTQDIPLIVDADGLHLICLDPSIVSGYKKAILTPNINESKML 534
+ V+ P++ DAD L+L+ ++P ++TP+ E+ L
Sbjct: 341 QKVENFRKPMLWDADALNLLAINP---DKRHNRVITPHPGEAARL 382
>sp|O06250|Y3433_MYCTU Hypothetical protein Rv3433c/MT3539
Length = 473
Score = 57.0 bits (136), Expect = 4e-08
Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Frame = +1
Query: 115 KGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPIL 294
K G V+ GS Y GA +A+ + + +V A + ++ PE+I P
Sbjct: 227 KYTQGVTGVLAGSSTYPGAAVLCTGAAVAATSGMVRYAGTAHAE--VLAHWPEVIASPTP 284
Query: 295 GTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPS 474
++ A ++GPGLG D + + + D+P++VDADGL ++ P
Sbjct: 285 AA--------AGRVQAWVVGPGLGTD--EAGAAALWFALDTDLPVLVDADGLTMLADHPD 334
Query: 475 IVSGYK-KAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIVAKGIHDMIT 651
+V+G +LTP+ E F ++ + + C Q+A +LG T++ KG +I
Sbjct: 335 LVAGRNAPTVLTPHAGE----FARLAGAPPGDDRVGACRQLADALG-ATVLLKGNVTVIA 389
Query: 652 D 654
D
Sbjct: 390 D 390
>sp|P96051|YFOL_STRTR Hypothetical protein in folD-pbp2B intergenic region (ORF1091)
Length = 278
Score = 53.5 bits (127), Expect = 5e-07
Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 4/145 (2%)
Frame = +1
Query: 112 YKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPI 291
+KG+ G++ ++GG Y GA +AI+ + SGA LV V ++ + ++ PE + +
Sbjct: 20 HKGSYGRVLLVGGLYPYGGAIIMAAIACVNSGAGLVTVATDRENIIALHAHLPEAMAFDL 79
Query: 292 LGTNRDECCKWLDKMHA---VIIGPGLGRDYIQE-SMDLIRYVKTQDIPLIVDADGLHLI 459
T R +LDK+ A ++IG GLG + + +++L+ + L+VD L+L+
Sbjct: 80 RETER-----FLDKLRAADVILIGSGLGEEETADWALELVLANIRSNQNLVVDGSALNLL 134
Query: 460 CLDPSIVSGYKKAILTPNINESKML 534
ILTP+ E + L
Sbjct: 135 AKKNQSSLPKCHLILTPHQKEWERL 159
>sp|Q58981|Y1586_METJA Hypothetical protein MJ1586
Length = 491
Score = 51.6 bits (122), Expect = 2e-06
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 5/188 (2%)
Frame = +1
Query: 100 DAIKYKGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELI 279
D+ +KG GK+ +IGGSK++ GAP + ++A L DLV ++ I K PE I
Sbjct: 244 DSNSHKGQNGKVLIIGGSKDFYGAPILAGLAA-LKIVDLVGIL--SVGKVIDKVNHPEFI 300
Query: 280 VHPILG-----TNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDAD 444
++ + G + D + K V++G GLG + ++ L ++ D +++DAD
Sbjct: 301 MYRVEGDYLSSQHVDYTLEIAKKYDVVVLGNGLGANNRTKAF-LNEFLAKYDGKVVIDAD 359
Query: 445 GLHLICLDPSIVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIV 624
+ +I D + + I TP+ E + + D+ I TIV
Sbjct: 360 AIKVI--DYNNFEFSENYIFTPHKREFEYM----------GIDLDNIENI-----KSTIV 402
Query: 625 AKGIHDMI 648
KG +D+I
Sbjct: 403 LKGKYDII 410
>sp|P37391|Y373_MYCLE Hypothetical protein ML0373
Length = 473
Score = 45.8 bits (107), Expect = 1e-04
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Frame = +1
Query: 115 KGNAGKICVIGGSKEYTGAPYFSAISALLSGADLVHVICPQDAAPIIKSYSPELIVHPIL 294
K G V+ GS Y GA +A+ + + +V A + ++ PE+I
Sbjct: 227 KYTQGVTGVLAGSSTYPGAAVLCTGAAVAATSGMVRYA--GSAYTQVLAHWPEVIASAT- 283
Query: 295 GTNRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPS 474
T W ++GPGLG D + + + D+P++VDADGL ++ P
Sbjct: 284 PTAAGRVQSW-------VVGPGLGIDATATAA--LWFALETDLPVLVDADGLTMLAAHPD 334
Query: 475 -IVSGYKKAILTPNINESKMLFEKVTKGTTFNFDMSVCSQIACSLGNITIVAKGIHDMIT 651
+++ +LTP+ +E F ++ + + C ++A S G T++ KG +I
Sbjct: 335 LVINRNAPTVLTPHASE----FARLAGTPPGDDRVGACRKLADSFG-ATVLLKGNVTVIA 389
Query: 652 D 654
D
Sbjct: 390 D 390
>sp|Q9WZR0|PYRG_THEMA CTP synthase (UTP--ammonia ligase) (CTP synthetase)
Length = 524
Score = 33.9 bits (76), Expect = 0.40
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 301 NRDECCKWLDKMHAVIIGPGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLD-PSI 477
N +E K LD+ A+II G GR ++ + I+Y + P++ G+ L+ ++
Sbjct: 323 NDEEVKKVLDEYDALIIPGGFGRRGVEGKIKAIKYARENKKPILGICLGMQLMVIEFARN 382
Query: 478 VSGYKKA 498
V GYK+A
Sbjct: 383 VFGYKEA 389
>sp|P36021|MOT8_HUMAN Monocarboxylate transporter 8 (MCT 8) (X-linked PEST-containing
transporter) (MCT 7)
Length = 613
Score = 30.8 bits (68), Expect = 3.4
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 355 PGLGRDYIQESMDLIRYVKTQDIPLIVDADGLHLICLDPSIVSGYKKAILTP 510
PGL + Y+Q L+ + + IPL D GL ++CL + G+ I+ P
Sbjct: 456 PGLKKIYLQVLSFLLLGLMSMMIPLCRDFGGLIVVCLFLGLCDGFFITIMAP 507
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,594,274
Number of Sequences: 369166
Number of extensions: 1589698
Number of successful extensions: 4367
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4357
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5733423530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)