Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O02
(781 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 492 e-139
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 491 e-138
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 491 e-138
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 490 e-138
sp|P52273|TBA_BOMMO Tubulin alpha chain 489 e-138
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 488 e-138
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 488 e-138
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 488 e-138
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 488 e-138
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 488 e-138
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 492 bits (1266), Expect = e-139
Identities = 242/259 (93%), Positives = 245/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 491 bits (1263), Expect = e-138
Identities = 242/259 (93%), Positives = 245/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLAD CTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADLCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 491 bits (1263), Expect = e-138
Identities = 240/259 (92%), Positives = 246/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYT+GKEI+DLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDLVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 490 bits (1262), Expect = e-138
Identities = 239/259 (92%), Positives = 246/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 489 bits (1259), Expect = e-138
Identities = 241/259 (93%), Positives = 244/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIE PTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 488 bits (1257), Expect = e-138
Identities = 238/259 (91%), Positives = 246/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYT+GKE++D+VLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDIVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQMVKCDPRHGKYMACC+LYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQMVKCDPRHGKYMACCLLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 488 bits (1257), Expect = e-138
Identities = 239/259 (92%), Positives = 244/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDR+RKL+DQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRVRKLSDQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPL TYAPVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 488 bits (1257), Expect = e-138
Identities = 242/259 (93%), Positives = 244/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVK DPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKVDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 488 bits (1257), Expect = e-138
Identities = 238/259 (91%), Positives = 246/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYT+GKE++DLVLDRIRKLADQCTGLQGFLIFH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDLVLDRIRKLADQCTGLQGFLIFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEF+VYPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFSVYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 488 bits (1256), Expect = e-138
Identities = 238/259 (91%), Positives = 245/259 (94%)
Frame = +3
Query: 3 GTYLQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLDRIRKLADQCTGLQGFLIFHX 182
GTY QLFHPEQLITGKEDAANNYARGHYTIGKEI+DLVLDRIRKLADQCTGLQGFL+FH
Sbjct: 81 GTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHS 140
Query: 183 XXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTTLEHSDC 362
LLMERLSVDYGKKSKLEF++YPAPQ++TAVVEPYNSILTTHTTLEHSDC
Sbjct: 141 FGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDC 200
Query: 363 AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLV 542
AFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSSITASLRFDGALNVDLTEFQTNLV
Sbjct: 201 AFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLV 260
Query: 543 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYR 722
PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYR
Sbjct: 261 PYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYR 320
Query: 723 GDVVPKDVNAAIATIKTKR 779
GDVVPKDVNAAIATIKTKR
Sbjct: 321 GDVVPKDVNAAIATIKTKR 339
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,682,953
Number of Sequences: 369166
Number of extensions: 1735440
Number of successful extensions: 4642
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4564
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7308943600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)