Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_N17
(738 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 369 e-102
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 367 e-101
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 366 e-101
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 363 e-100
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 363 e-100
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 362 e-100
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 361 e-99
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 361 e-99
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 361 1e-99
sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha) 360 2e-99
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 369 bits (946), Expect = e-102
Identities = 174/215 (80%), Positives = 199/215 (92%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
+GKTLL+ALDS+ PP RPT+KPLRLPLQDVYKIGGIGTVPVGRVETGILKPGM+VTFAPQ
Sbjct: 224 TGKTLLEALDSVVPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMIVTFAPQ 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
LTTEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+IRRG+V SDSK+DPA++ F AQ
Sbjct: 284 NLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDIRRGSVASDSKNDPAKETKMFTAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VIIMNHPG+I AGY+PVLDCHTAHIACKFAEL +K+DRRSGK +ED PK KSGDAG++
Sbjct: 344 VIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRSGKKVEDNPKSLKSGDAGIID 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 LIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 367 bits (942), Expect = e-101
Identities = 175/215 (81%), Positives = 197/215 (91%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG +LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP
Sbjct: 224 SGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPV 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSKSDP ++A F +Q
Sbjct: 284 NITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKSDPPQEAAQFTSQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVE 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
+VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 366 bits (939), Expect = e-101
Identities = 174/215 (80%), Positives = 197/215 (91%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG +LL+ALD++ PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETGIL+PGMVVTFAP
Sbjct: 224 SGVSLLEALDTILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGILRPGMVVTFAPV 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+IRRGNVC DSK+DP ++A F +Q
Sbjct: 284 NITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDIRRGNVCGDSKADPPQEAAQFTSQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKIDRRSGKKLEDNPKSLKSGDAAIVE 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
+VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 363 bits (932), Expect = e-100
Identities = 169/215 (78%), Positives = 198/215 (92%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SGKTLLDA+D+++PP RP++KPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTFAP
Sbjct: 222 SGKTLLDAIDAIDPPQRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPA 281
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVK+IRRGNVCSDSK+DPA++A F AQ
Sbjct: 282 NVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDIRRGNVCSDSKNDPAKEAGSFTAQ 341
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VI++NHPG+I AGY+PVLDCHTAHIACKFAEL++KIDRRSGK LED PK KSGD+ +V+
Sbjct: 342 VIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVK 401
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 MIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 363 bits (931), Expect = e-100
Identities = 174/215 (80%), Positives = 192/215 (89%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG TLL+ALD + PP RPTNKPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGM+VTFAP
Sbjct: 224 SGITLLEALDCIIPPQRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMIVTFAPS 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+IRRGNV DSK+DP QA F AQ
Sbjct: 284 NVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKIDRRSGKKLEDDPKFLKSGDAAIVE 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
++P KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 362 bits (928), Expect = e-100
Identities = 171/215 (79%), Positives = 198/215 (92%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SGKTLL+ALDS+ PP RPT++PLRLPLQDVYKIGGIGTVPVGRVETGI+KPGMVVTFAPQ
Sbjct: 224 SGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKIGGIGTVPVGRVETGIIKPGMVVTFAPQ 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+IRRG+VCSDSK DPA++A F AQ
Sbjct: 284 NVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPAKEARTFHAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VIIMNHPG+I GY+PVLDCHTAHIACKF EL +K+DRR+GK +EDFPK KSGDAG+V
Sbjct: 344 VIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVE 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
L+P+KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 404 LIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 361 bits (927), Expect = e-99
Identities = 174/215 (80%), Positives = 194/215 (90%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP
Sbjct: 224 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQ
Sbjct: 284 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
+VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 361 bits (927), Expect = e-99
Identities = 174/215 (80%), Positives = 194/215 (90%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP
Sbjct: 224 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQ
Sbjct: 284 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
+VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 361 bits (926), Expect = 1e-99
Identities = 173/215 (80%), Positives = 194/215 (90%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
SG TLL+ALD + PPTRPT+KPLRLPLQDVYKIGGIGTVPVGRVETG+LKPGMVVTFAP
Sbjct: 224 SGTTLLEALDCILPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPV 283
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
+TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++RRGNV DSK+DP +A F AQ
Sbjct: 284 NVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDVRRGNVAGDSKNDPPMEAAGFTAQ 343
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KIDRRSGK LED PK KSGDA +V
Sbjct: 344 VIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVD 403
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 404 MIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P41745|EF1A_ARXAD Elongation factor 1-alpha (EF-1-alpha)
Length = 459
Score = 360 bits (925), Expect = 2e-99
Identities = 170/215 (79%), Positives = 195/215 (90%)
Frame = +1
Query: 4 SGKTLLDALDSLEPPTRPTNKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPQ 183
+GKTLL+A+D+++PPTRP++KPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTFAP
Sbjct: 222 TGKTLLEAIDAVDPPTRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPA 281
Query: 184 GLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEIRRGNVCSDSKSDPARQATDFVAQ 363
G+TTEVKSVEMHHE L E LPGDNVGFN+KNVSVKEIRRGNV DSK+DP + F AQ
Sbjct: 282 GVTTEVKSVEMHHEQLPEGLPGDNVGFNVKNVSVKEIRRGNVAGDSKNDPPKGCDSFTAQ 341
Query: 364 VIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKIDRRSGKDLEDFPKQFKSGDAGLVR 543
VII NHPG+I AGYSPVLDCHTAHIAC+F EL++KIDRRSGK +ED PK K+GDA +VR
Sbjct: 342 VIIFNHPGQISAGYSPVLDCHTAHIACRFDELIEKIDRRSGKKVEDSPKFVKAGDAAIVR 401
Query: 544 LVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 648
++PSKPMCVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 402 MIPSKPMCVETFTEYPPLGRFAVRDMRQTVAVGVI 436
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,111,573
Number of Sequences: 369166
Number of extensions: 1736478
Number of successful extensions: 5690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5388
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)