Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_N14
(500 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10948|YMP4_CAEEL Hypothetical protein B0361.4 in chromo... 33 0.49
sp|Q8KA53|CCA_BUCAP CCA-adding enzyme (tRNA nucleotidyltran... 30 4.2
sp|Q58517|YB17_METJA Hypothetical protein MJ1117 29 7.1
sp|Q7SEY9|ERO1_NEUCR Endoplasmic oxidoreductin 1 precursor 29 7.1
sp|P62743|AP2S1_MOUSE Clathrin coat assembly protein AP17 (... 28 9.3
sp|Q92355|SEN1_SCHPO Helicase sen1 (Endonuclease sen1) 28 9.3
sp|Q95K52|ZN283_MACFA Zinc finger protein 283 28 9.3
>sp|Q10948|YMP4_CAEEL Hypothetical protein B0361.4 in chromosome III
Length = 374
Score = 32.7 bits (73), Expect = 0.49
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +3
Query: 246 SVI*SNLLEIKLLNSSFFAPPRINKFFQTENIISFFHFNFGN 371
S+I SN + + SS FA +N FF TE + FHFNF +
Sbjct: 301 SIIVSNYFSLHKIISSIFA---VNSFFFTEKRKAHFHFNFSS 339
>sp|Q8KA53|CCA_BUCAP CCA-adding enzyme (tRNA nucleotidyltransferase) (tRNA
adenylyl-/cytidylyl- transferase) (tRNA
CCA-pyrophosphorylase) (tRNA-NT)
Length = 412
Score = 29.6 bits (65), Expect = 4.2
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 483 DESTQITKQFCNNLQIRNQSTELYETNNKFILY*FEEHFQN*NEKMKLYSR 331
D+S ++ K+ C I + EL N F ++ H+Q+ + +K++S+
Sbjct: 273 DDSAKLVKKLCKRCNIPSHIEELAVLNTGFCVFLSSIHYQSSSNIIKMFSK 323
>sp|Q58517|YB17_METJA Hypothetical protein MJ1117
Length = 196
Score = 28.9 bits (63), Expect = 7.1
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = -1
Query: 413 TKQIINSSYIDLKNISKIEMKK*NYILGLEEFI 315
TK+ INS+Y D KNI I+ YI L E I
Sbjct: 56 TKEYINSAYKDYKNIVVIDTSGKGYIEDLNECI 88
>sp|Q7SEY9|ERO1_NEUCR Endoplasmic oxidoreductin 1 precursor
Length = 668
Score = 28.9 bits (63), Expect = 7.1
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +1
Query: 88 LNNYVNQLHNFVEQLNNFIFNDKIQQFYSLIT 183
L+ Y+N+LH F E+++N FN Y+L+T
Sbjct: 308 LSCYINRLHKFPERISNLYFN------YALLT 333
>sp|P62743|AP2S1_MOUSE Clathrin coat assembly protein AP17 (Clathrin coat-associated
protein AP17) (Plasma membrane adaptor AP-2 17 kDa
protein) (Clathrin assembly protein 2 small chain)
sp|P62744|AP2S1_RAT Clathrin coat assembly protein AP17 (Clathrin coat-associated
protein AP17) (Plasma membrane adaptor AP-2 17 kDa
protein) (Clathrin assembly protein 2 small chain)
sp|Q5R940|AP2S1_PONPY Clathrin coat assembly protein AP17 (Clathrin coat-associated
protein AP17) (Plasma membrane adaptor AP-2 17 kDa
protein) (Clathrin assembly protein 2 small chain)
sp|P53680|AP2S1_HUMAN Clathrin coat assembly protein AP17 (Clathrin coat-associated
protein AP17) (Plasma membrane adaptor AP-2 17 kDa
protein) (HA2 17 kDa subunit) (Clathrin assembly protein
2 small chain)
Length = 142
Score = 28.5 bits (62), Expect = 9.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Frame = +1
Query: 97 YVNQLHNFVEQLNNFIFN----DKIQQFYSLITSLFE 195
Y+ +HNFVE LN + N D + FY + T + E
Sbjct: 80 YLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDE 116
>sp|Q92355|SEN1_SCHPO Helicase sen1 (Endonuclease sen1)
Length = 1687
Score = 28.5 bits (62), Expect = 9.3
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +1
Query: 151 DKIQQFYSLITSLFEHLIR*KAFFCKNTY-NALQLFD 258
D+ F SL +FE L+ K F CKN Y NA+ F+
Sbjct: 113 DETIDFTSLPCLIFETLLNPKLFTCKNIYKNAIDAFN 149
>sp|Q95K52|ZN283_MACFA Zinc finger protein 283
Length = 654
Score = 28.5 bits (62), Expect = 9.3
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -1
Query: 458 NFVTICKLGTNQQNY-TKQIINSSYIDLKNISKIEMKK*NYILGLEE--FINSWRSK 297
N+ + L Y TK+I + I N S+ EMK+ + LGLE F N+W+ K
Sbjct: 81 NYSNLVSLDLESTTYETKKIFSEKDIFEINFSQWEMKEKSKTLGLEASIFRNNWKCK 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,655,563
Number of Sequences: 369166
Number of extensions: 794863
Number of successful extensions: 2150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2150
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)