Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_N04
(468 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P39526|YJU7_YEAST Hypothetical 229.9 kDa protein in NUC1... 33 0.32
sp|Q99170|GRP78_YARLI 78 kDa glucose-regulated protein homo... 32 0.55
sp|Q6BZH1|GRP78_DEBHA 78 kDa glucose-regulated protein homo... 31 1.2
sp|Q81GP2|OAT_BACCR Ornithine aminotransferase (Ornithine--... 31 1.2
sp|Q9HG01|GRP78_PICAN 78 kDa glucose-regulated protein homo... 31 1.2
sp|P83616|GRP78_ASPNG 78 kDa glucose-regulated protein homo... 30 2.1
sp|P36604|GRP78_SCHPO 78 kDa glucose-regulated protein homo... 30 2.7
sp|Q81TV3|OAT_BACAN Ornithine aminotransferase (Ornithine--... 29 4.6
sp|P22010|GRP78_KLULA 78 kDa glucose-regulated protein homo... 29 4.6
sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain 29 4.6
>sp|P39526|YJU7_YEAST Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic region
Length = 2014
Score = 33.1 bits (74), Expect = 0.32
Identities = 17/63 (26%), Positives = 34/63 (53%)
Frame = +3
Query: 255 FDFISYQLNSTDLTDSKCANFVWIDENNKFFDKHISFSGMLRNTKFENLNVDVFKKFLQY 434
F+ I + +N L D+ + N+K+ D +S SG+ + + N +++ ++L+Y
Sbjct: 338 FESIIHLINLNLLADNTFLS------NSKYLDIVLSLSGVFSSYEVNNRSMNTLSRYLRY 391
Query: 435 FQH 443
FQH
Sbjct: 392 FQH 394
>sp|Q99170|GRP78_YARLI 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
Length = 670
Score = 32.3 bits (72), Expect = 0.55
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = +3
Query: 330 ENNKFFDKHISFSGMLRNTKFENLNVDVFKKFLQYFQHGLK 452
E FFD FS L KFE LN+D+FK+ L+ + LK
Sbjct: 315 EIESFFDGE-DFSETLTRAKFEELNIDLFKRTLKPVEQVLK 354
>sp|Q6BZH1|GRP78_DEBHA 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BIP)
Length = 683
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 357 ISFSGMLRNTKFENLNVDVFKKFLQYFQHGLK 452
I FS L KFE LN++ FKK L+ Q LK
Sbjct: 335 IDFSETLSRAKFEELNIESFKKTLKPVQQVLK 366
>sp|Q81GP2|OAT_BACCR Ornithine aminotransferase (Ornithine--oxo-acid aminotransferase)
Length = 396
Score = 31.2 bits (69), Expect = 1.2
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -3
Query: 361 EICLSKNLLF--SSIHTKLAHFESVRSVEFN**LIKSNCTPSKQIACKQIG*GNFPLSTI 188
E+C +N+LF I T L+ V + +++ N TP I K +G G FP+S +
Sbjct: 214 EVCKKENVLFVADEIQTGLSRTGKVFACDWD------NVTPDMYILGKALGGGVFPISCV 267
Query: 187 SSPKSLRAV 161
++ + + V
Sbjct: 268 AANRDILGV 276
>sp|Q9HG01|GRP78_PICAN 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
Length = 665
Score = 31.2 bits (69), Expect = 1.2
Identities = 16/31 (51%), Positives = 19/31 (61%)
Frame = +3
Query: 357 ISFSGMLRNTKFENLNVDVFKKFLQYFQHGL 449
I FS L KFE LN+D+FKK L+ Q L
Sbjct: 326 IDFSESLSRAKFEELNMDLFKKTLKPVQQVL 356
>sp|P83616|GRP78_ASPNG 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
sp|P83617|GRP78_ASPKA 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
sp|P59769|GRP78_ASPAW 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
Length = 672
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +3
Query: 363 FSGMLRNTKFENLNVDVFKKFLQYFQHGLK 452
FS L KFE LN+D+FKK L+ + LK
Sbjct: 337 FSETLTRAKFEELNMDLFKKTLKPVEQVLK 366
>sp|P36604|GRP78_SCHPO 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
Length = 663
Score = 30.0 bits (66), Expect = 2.7
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3
Query: 330 ENNKFFDKHISFSGMLRNTKFENLNVDVFKKFLQYFQHGLK 452
E FF+ FS L KFE +N+D+FKK L+ + LK
Sbjct: 313 EIESFFNGQ-DFSETLSRAKFEEINMDLFKKTLKPVEQVLK 352
>sp|Q81TV3|OAT_BACAN Ornithine aminotransferase (Ornithine--oxo-acid aminotransferase)
Length = 396
Score = 29.3 bits (64), Expect = 4.6
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = -3
Query: 361 EICLSKNLLF--SSIHTKLAHFESVRSVEFN**LIKSNCTPSKQIACKQIG*GNFPLSTI 188
E+C +N+LF I T L V + +++ N TP I K +G G FP+S
Sbjct: 214 EVCKKENVLFVADEIQTGLGRTGKVFACDWD------NVTPDMYILGKALGGGVFPISCA 267
Query: 187 SSPKSLRAV 161
++ + + V
Sbjct: 268 AANRDILGV 276
>sp|P22010|GRP78_KLULA 78 kDa glucose-regulated protein homolog precursor (GRP 78)
(Immunoglobulin heavy chain binding protein homolog)
(BiP)
Length = 679
Score = 29.3 bits (64), Expect = 4.6
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +3
Query: 330 ENNKFFDKHISFSGMLRNTKFENLNVDVFKKFLQYFQHGLK 452
E + FF+ I FS L KFE LN+ +FKK L+ + LK
Sbjct: 329 EIDSFFNG-IDFSETLTRAKFEELNLALFKKTLKPVEKVLK 368
>sp|P57528|EX5C_BUCAI Exodeoxyribonuclease V gamma chain
Length = 1070
Score = 29.3 bits (64), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 330 ENNKFFDKHISFSGMLRNTKFENLNVDVFKKFLQY 434
+N KFF+ M++ KF L +FKK++ Y
Sbjct: 100 DNKKFFENCSKKKDMIKKFKFSFLMASIFKKYILY 134
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,951,441
Number of Sequences: 369166
Number of extensions: 920014
Number of successful extensions: 2044
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)