Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M20
(740 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 337 2e-92
sp|P49154|RS2_URECA 40S ribosomal protein S2 330 2e-90
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 323 4e-88
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 321 1e-87
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 321 1e-87
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 319 6e-87
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 311 9e-85
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 306 4e-83
sp|O74892|RS2_SCHPO 40S ribosomal protein S2 306 5e-83
sp|P49688|RS2_ARATH 40S ribosomal protein S2 298 1e-80
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 337 bits (864), Expect = 2e-92
Identities = 165/219 (75%), Positives = 185/219 (84%), Gaps = 1/219 (0%)
Frame = +3
Query: 78 KDSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQK 254
+DSKEW P TKLGRLV+ GK+K+LEEIY+YS+PIKE EIID+FL LKDEVL I PVQK
Sbjct: 38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQK 97
Query: 255 QTRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKL 434
QTRAGQRTRFKA VA+GDNNGH+GLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+
Sbjct: 98 QTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKI 157
Query: 435 GDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLE 614
G HTVPCKVTGKCGSVSVRLIPAPRGTGIV APV KKLL+MAGI+D YTSA G T TL
Sbjct: 158 GKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLG 217
Query: 615 NFAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
NFAKATY AI +TY YL+PDLW P P+ ++ FL
Sbjct: 218 NFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFL 256
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 330 bits (847), Expect = 2e-90
Identities = 165/216 (76%), Positives = 183/216 (84%), Gaps = 1/216 (0%)
Frame = +3
Query: 87 KEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQTR 263
KEW P TKLGRLVK K+KTLEEIY++S+PIKE EIID+FL + LKDEVL I PVQKQTR
Sbjct: 44 KEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTR 103
Query: 264 AGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDT 443
AGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKP 163
Query: 444 HTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFA 623
HTVPCKVTGKCGSV VRLIPAPRGTGIV APV KKLL+MAGI D YTSA GQTATL NFA
Sbjct: 164 HTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFA 223
Query: 624 KATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
KATY AI TY YL+PDLW T T++P+ E+ +L
Sbjct: 224 KATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYL 259
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 323 bits (827), Expect = 4e-88
Identities = 162/218 (74%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPE-LKDEVLSIKPVQKQ 257
+ KEW P TKLGRLVK K+K+LEEIY+YS+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQ 100
Query: 258 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 437
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS+IPVR+GYWGNK+G
Sbjct: 101 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIG 160
Query: 438 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 617
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 161 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 220
Query: 618 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
FAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 221 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 321 bits (823), Expect = 1e-87
Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 257
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 258 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 437
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 438 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 617
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 618 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
FAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 321 bits (822), Expect = 1e-87
Identities = 160/218 (73%), Positives = 181/218 (83%), Gaps = 1/218 (0%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 257
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 115
Query: 258 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 437
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 116 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 175
Query: 438 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 617
HTVPCKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 176 KPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 235
Query: 618 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
FAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 236 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 319 bits (817), Expect = 6e-87
Identities = 159/218 (72%), Positives = 180/218 (82%), Gaps = 1/218 (0%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 257
+ KEW P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQ
Sbjct: 49 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQ 108
Query: 258 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 437
TRAGQRTRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G
Sbjct: 109 TRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIG 168
Query: 438 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 617
HTVPCKVTG+CGSV VRLIP PRGTGIV APV KKLL MAGI D YTSA G TATL N
Sbjct: 169 KPHTVPCKVTGRCGSVLVRLIPPPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGN 228
Query: 618 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
FAKAT+ AI +TY YL+PDLW T T++P+ E L
Sbjct: 229 FAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHL 266
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 311 bits (798), Expect = 9e-85
Identities = 153/214 (71%), Positives = 173/214 (80%)
Frame = +3
Query: 90 EWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQTRAG 269
EW P TKLGRLVK K+ TLEEIY+ S+PIKE EIID LKDEVL I PVQKQT AG
Sbjct: 56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSNLKDEVLKISPVQKQTTAG 115
Query: 270 QRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHT 449
QRTRFKA VA+GD+ GHVGLGVKC+KEVATAIRGAI AKL+V+PVR+GYWGNK+G HT
Sbjct: 116 QRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHT 175
Query: 450 VPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKA 629
VPCKVTGKC SV VRLIPAPRGTGIV APV KKLL MAGI+D YT+A G TATL NFAKA
Sbjct: 176 VPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKA 235
Query: 630 TYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
TY A++RTY YL+PDLW ++P+ H ++L
Sbjct: 236 TYAALQRTYSYLTPDLWKEEALEKSPYQRHHEYL 269
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 306 bits (784), Expect = 4e-83
Identities = 153/198 (77%), Positives = 170/198 (85%), Gaps = 1/198 (0%)
Frame = +3
Query: 99 PCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQTRAGQR 275
P TKLGRLVK K+K+LEEIY++S+PIKE+EIID+FL LKDEVL I PVQKQTRAGQR
Sbjct: 2 PVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQR 61
Query: 276 TRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVP 455
TRFKA VA+GD NGHVGLGVKC+KEVATAIRGAI AKLS++PVR+GYWGNK+G HTVP
Sbjct: 62 TRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVP 121
Query: 456 CKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENFAKATY 635
CKVTG+CGSV VRLIPAPRGTGIV APV KKLL MAGI D YTSA G TATL NFAKAT+
Sbjct: 122 CKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATF 181
Query: 636 MAIRRTYEYLSPDLWNAT 689
AI +TY YL+PDLW T
Sbjct: 182 DAISKTYSYLTPDLWKET 199
>sp|O74892|RS2_SCHPO 40S ribosomal protein S2
Length = 253
Score = 306 bits (783), Expect = 5e-83
Identities = 142/217 (65%), Positives = 173/217 (79%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFLPELKDEVLSIKPVQKQT 260
+ KEW P TKLGRLVKAGK+K++EEIY+YS+PIKE +I+DYFLP L DEV+ + PVQKQT
Sbjct: 30 EEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLPRLNDEVMKVVPVQKQT 89
Query: 261 RAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLGD 440
RAGQRTRFKA V +GD++GHVGLG+KCAKEVATAIRGAI KLS++P+R+GYWG LGD
Sbjct: 90 RAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGD 149
Query: 441 THTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLENF 620
HTVP KV+GKCGSV+VRL+PAPRG G+V APVTK+ L +AGI+D YT + G T TL NF
Sbjct: 150 PHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNF 209
Query: 621 AKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
KA + A TY L+P+LW P Q P +E+A L
Sbjct: 210 VKAAFAAASLTYGILTPNLWAERPFGQTPIEEYADIL 246
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 298 bits (763), Expect = 1e-80
Identities = 140/218 (64%), Positives = 176/218 (80%), Gaps = 1/218 (0%)
Frame = +3
Query: 81 DSKEWEPCTKLGRLVKAGKVKTLEEIYIYSVPIKEAEIIDYFL-PELKDEVLSIKPVQKQ 257
+ ++W P TKLGRLV AG +K +E+IY++S+P+KE +IID + P LKDEV+ I PVQKQ
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQ 109
Query: 258 TRAGQRTRFKAVVALGDNNGHVGLGVKCAKEVATAIRGAITQAKLSVIPVRKGYWGNKLG 437
TRAGQRTRFKA V +GD NGHVGLGVKC+KEVATAIRGAI AKLSV+PVR+GYWGNK+G
Sbjct: 110 TRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIG 169
Query: 438 DTHTVPCKVTGKCGSVSVRLIPAPRGTGIVGAPVTKKLLSMAGIQDVYTSANGQTATLEN 617
HTVPCKVTGKCGSV+VR++PAPRG+GIV A V KK+L AGI DV+TS+ G T TL N
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 618 FAKATYMAIRRTYEYLSPDLWNATPNTQNPFDEHAKFL 731
F KAT+ +++TY +L+P+ W T +++P+ EH FL
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFL 267
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,075,888
Number of Sequences: 369166
Number of extensions: 1618465
Number of successful extensions: 4559
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4402
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6679696800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)