Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M11
(624 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alp... 306 4e-83
sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha) 305 5e-83
sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alp... 305 8e-83
sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte for... 301 7e-82
sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte for... 300 3e-81
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 299 4e-81
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 299 4e-81
sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha) 299 4e-81
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 298 6e-81
sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha) 298 6e-81
>sp|Q71V39|EF1A2_RABIT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|Q05639|EF1A2_HUMAN Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 306 bits (783), Expect = 4e-83
Identities = 145/178 (81%), Positives = 162/178 (91%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+I
Sbjct: 261 TVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNVC DSKSDP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVCGDSKSDPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P27592|EF1A_ONCVO Elongation factor 1-alpha (EF-1-alpha)
Length = 464
Score = 305 bits (782), Expect = 5e-83
Identities = 143/178 (80%), Positives = 164/178 (92%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETGILKPGM+VTFAPQ LTTEVKSVEMHHEAL EALPGDNVGFN+KN+S+K+I
Sbjct: 261 TVPVGRVETGILKPGMIVTFAPQNLTTEVKSVEMHHEALQEALPGDNVGFNVKNISIKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRG+V SDSK+DPA++ F AQVIIMNHPG+I AGY+PVLDCHTAHIACKFAEL +K+D
Sbjct: 321 RRGSVASDSKNDPAKETKMFTAQVIIMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVD 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK +ED PK KSGDAG++ L+P+KP+CVETF+EYPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKVEDNPKSLKSGDAGIIDLIPTKPLCVETFTEYPPLGRFAVRDMRQTVAVGVI 438
>sp|P62631|EF1A2_MOUSE Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
sp|P62632|EF1A2_RAT Elongation factor 1-alpha 2 (EF-1-alpha-2) (Elongation factor 1
A-2) (eEF1A-2) (Statin S1)
Length = 463
Score = 305 bits (780), Expect = 8e-83
Identities = 144/178 (80%), Positives = 162/178 (91%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETGIL+PGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK+I
Sbjct: 261 TVPVGRVETGILRPGMVVTFAPVNITTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNVC DSK+DP ++A F +QVII+NHPG+I AGYSPV+DCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVCGDSKADPPQEAAQFTSQVIILNHPGQISAGYSPVIDCHTAHIACKFAELKEKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDNPKSLKSGDAAIVEMVPGKPMCVESFSQYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17508|EF1A3_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1) (EF-1AO1)
Length = 461
Score = 301 bits (772), Expect = 7e-82
Identities = 143/178 (80%), Positives = 159/178 (89%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+I
Sbjct: 261 TVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALVEALPGDNVGFNVKNISVKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V ++P KPMCVETFS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVETFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P17507|EF1A2_XENLA Elongation factor 1-alpha, oocyte form (EF-1-alpha-O) (EF-1AO) (42S
p48)
Length = 461
Score = 300 bits (767), Expect = 3e-81
Identities = 142/178 (79%), Positives = 159/178 (89%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG+LKPGM+VTFAP +TTEVKSVEMHHEAL EALPGDNVGFN+KN+SVK+I
Sbjct: 261 TVPVGRVETGVLKPGMIVTFAPSNVTTEVKSVEMHHEALQEALPGDNVGFNVKNISVKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNV DSK+DP QA F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKQKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDDPKFLKSGDAAIVEMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 299 bits (765), Expect = 4e-81
Identities = 143/178 (80%), Positives = 160/178 (89%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++
Sbjct: 261 TVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 299 bits (765), Expect = 4e-81
Identities = 143/178 (80%), Positives = 160/178 (89%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++
Sbjct: 261 TVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V +VP KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P28295|EF1A_ABSGL Elongation factor 1-alpha (EF-1-alpha)
Length = 458
Score = 299 bits (765), Expect = 4e-81
Identities = 139/178 (78%), Positives = 162/178 (91%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG++K GMVVTFAP +TTEVKSVEMHHE L E LPGDNVGFN+KNVSVK+I
Sbjct: 259 TVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEQLVEGLPGDNVGFNVKNVSVKDI 318
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNVCSDSK+DPA++A F AQVI++NHPG+I AGY+PVLDCHTAHIACKFAEL++KID
Sbjct: 319 RRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKID 378
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGD+ +V+++PSKPMCVE +++YPPLGRFAVRDM+QTVAVGVI
Sbjct: 379 RRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDMRQTVAVGVI 436
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 298 bits (764), Expect = 6e-81
Identities = 142/178 (79%), Positives = 160/178 (89%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETG+LKPGMVVTFAP +TTEVKSVEMHHEAL+EALPGDNVGFN+KNVSVK++
Sbjct: 261 TVPVGRVETGVLKPGMVVTFAPVNVTTEVKSVEMHHEALSEALPGDNVGFNVKNVSVKDV 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRGNV DSK+DP +A F AQVII+NHPG+I AGY+PVLDCHTAHIACKFAEL +KID
Sbjct: 321 RRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKID 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RRSGK LED PK KSGDA +V ++P KPMCVE+FS+YPPLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRSGKKLEDGPKFLKSGDAAIVDMIPGKPMCVESFSDYPPLGRFAVRDMRQTVAVGVI 438
>sp|P53013|EF1A_CAEEL Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 298 bits (764), Expect = 6e-81
Identities = 140/178 (78%), Positives = 163/178 (91%)
Frame = +1
Query: 1 TVPVGRVETGILKPGMVVTFAPQGLTTEVKSVEMHHEALTEALPGDNVGFNIKNVSVKEI 180
TVPVGRVETGI+KPGMVVTFAPQ +TTEVKSVEMHHE+L EA+PGDNVGFN+KNVSVK+I
Sbjct: 261 TVPVGRVETGIIKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDI 320
Query: 181 RRGNVCSDSKSDPARQATDFVAQVIIMNHPGEIHAGYSPVLDCHTAHIACKFAELMKKID 360
RRG+VCSDSK DPA++A F AQVIIMNHPG+I GY+PVLDCHTAHIACKF EL +K+D
Sbjct: 321 RRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVD 380
Query: 361 RRSGKDLEDFPKQFKSGDAGLVRLVPSKPMCVETFSEYPPLGRFAVRDMKQTVAVGVI 534
RR+GK +EDFPK KSGDAG+V L+P+KP+CVE+F++Y PLGRFAVRDM+QTVAVGVI
Sbjct: 381 RRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVI 438
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,009,250
Number of Sequences: 369166
Number of extensions: 1401777
Number of successful extensions: 4426
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4255
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4926080070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)