Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_M04
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog) 44 7e-04
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 42 0.002
sp|P50947|YNJ7_YEAST Hypothetical 37.0 kDa protein in RAS2-... 39 0.024
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 38 0.031
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 38 0.031
sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chrom... 38 0.040
sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC) 37 0.053
sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC p... 37 0.053
sp|Q8CQQ7|Y2353_STAES Hypothetical protein SE2353 37 0.053
sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1 36 0.12
>sp|O74653|POB1_SCHPO Protein pob1 (BOI protein homolog)
Length = 871
Score = 43.5 bits (101), Expect = 7e-04
Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Frame = +2
Query: 218 IQPPCYEEAIKCSQYTIVASKNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSN 397
I P + E I + S+ E + + + S S RST S +S++ +N
Sbjct: 54 IFPASHVELISDERSDSSDSRRGKEDFSISTAEVTRSSLSSSRSTSSRSDKDSEKLYSNN 113
Query: 398 SMNTEHPGNINQSITSIPNTSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARV 577
S+++ H +N + S+ S+ SNF+ ++ + S S+D+ N + A
Sbjct: 114 SLSSSHSSILNGPLDSLSKPSVPSNFNSMFPSSKQEGPSPLLDNQPSSDLSNFNTIDADY 173
Query: 578 HCPRVTNNLASESNVPFRSGSI-ETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGS 745
NN ++ ++ P S S+ + ++ D T+ +++ N S + R S
Sbjct: 174 ------NNASASTSAPATSASLKKVLSAEDSVRETITDIETALQNMSTSASRTPNDS 224
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 42.4 bits (98), Expect = 0.002
Identities = 37/160 (23%), Positives = 68/160 (42%)
Frame = +2
Query: 275 SKNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPN 454
+ N I K+ + S S+ + + S +N+ +N+ N + N N + + N
Sbjct: 418 NNNIIGNGKITTTTTTSTSPSSINNNEDISSNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 477
Query: 455 TSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRS 634
S SN + N+N N + SN N +N+ ++ S ++ NN+ + +N +
Sbjct: 478 NSNSSNTNN-NNINNTTNNNNSNSNNNNNNNNSNSNSNSN------NNNINNNNNNNNNN 530
Query: 635 GSIETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGD 754
+I S + S G N S G+ +GSIG+
Sbjct: 531 NNIYLTKKPSIGSTDESSTGSLGGNNSSGNNNSSSGSIGN 570
>sp|P50947|YNJ7_YEAST Hypothetical 37.0 kDa protein in RAS2-RPS7B intergenic region
Length = 330
Score = 38.5 bits (88), Expect = 0.024
Identities = 38/160 (23%), Positives = 70/160 (43%)
Frame = +2
Query: 287 IEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQ 466
+E+ + KSN KS+ +++S + + R+ G + + H + +++ + + +
Sbjct: 138 MEKIESKSNS---KSSQALKSESRREAMAANRRQGEHYSASTHQQDDSKNDANYGGSRHE 194
Query: 467 SNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRSGSIE 646
S N N K ++N AN +N +R RV V+ + S + +G I
Sbjct: 195 SQDHTGNNTNSRK---RANAANTNNADPETKKRKRRVATTAVSPSTISTATA-VNNGRIG 250
Query: 647 TMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGDPTNC 766
T S G S ++ +SR S RP+T G+P C
Sbjct: 251 TSTASRGVSSVGNSNNSRIS-------RPKTNDYGEPLYC 283
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 38.1 bits (87), Expect = 0.031
Identities = 24/96 (25%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Frame = +2
Query: 281 NSIEQHKLKSNQGKPKSNLS-MRSTDKDSRHNSQRQIGSNSMNTEHP--GNINQSITSIP 451
NSI + +N +N++ M S DK+ N+ + N N ++ N+N ++ +
Sbjct: 220 NSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNM 279
Query: 452 NTSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVS 559
N +M +N + N N + N++ + N +N+M+N++
Sbjct: 280 NHNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNNIN 315
Score = 31.2 bits (69), Expect = 3.8
Identities = 25/132 (18%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Frame = +2
Query: 278 KNSIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNT 457
KN + N SM + ++ +N+ +N+MN N+N ++ + N
Sbjct: 246 KNQNSNNNFYMNYNYQNRKNSMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNH 305
Query: 458 SMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTN-NLASESNVPFRS 634
+M +N + +L D ++S + A+ M N + + P N + N+ +
Sbjct: 306 NMNNNMNNINSL--DSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKREN 363
Query: 635 GSIETMAVSDGT 670
++ D T
Sbjct: 364 NNMNNYGYDDNT 375
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 38.1 bits (87), Expect = 0.031
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +2
Query: 329 SNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPN-TSMQSNFSVFQNLN-ED 502
+N S ST+ S +NS+ G+N+MN + N N S + N T+ Q+N F N N ++
Sbjct: 131 TNFSQGSTNYGSNYNSENFQGNNNMNNYNFYNNNSSNNNNNNQTNTQNN---FMNRNMKN 187
Query: 503 KNLSQSNVANRSND 544
KN++ +N N SN+
Sbjct: 188 KNMNNNNNNNNSNN 201
Score = 34.7 bits (78), Expect = 0.34
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 332 NLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSNFSVFQNLNEDKNL 511
N + + + +++ N+Q + +M ++ N N + S N M NF+ Q +N + L
Sbjct: 162 NNNSSNNNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPML 221
Query: 512 SQSN-VANRSNDMDN 553
+Q+N + N +N+ +N
Sbjct: 222 NQNNFMLNNNNNYNN 236
Score = 33.9 bits (76), Expect = 0.58
Identities = 35/158 (22%), Positives = 65/158 (41%), Gaps = 4/158 (2%)
Frame = +2
Query: 158 NPIDNFEIYNTIYSDDQASLIQPPCYEEAIKCSQYTIVASKNSIEQHKLKSNQGKPKSNL 337
N N +IYNT +L+ +EEA+ + S E+ + + P ++
Sbjct: 58 NNFANKKIYNT-------ALVTFNTHEEALNVLKNIKNLIDTSGEERNIDAKFAVPNVSI 110
Query: 338 SMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSNFSVFQNLNE----DK 505
+ + ++ +NS N+MN N +Q T+ + NF N+N +
Sbjct: 111 N----NNNNNNNSNTFFQKNNMNNT---NFSQGSTNYGSNYNSENFQGNNNMNNYNFYNN 163
Query: 506 NLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESN 619
N S +N N++N +N R+ + NN + +N
Sbjct: 164 NSSNNNNNNQTNTQNNFMNRNMKNKNMNNNNNNNNSNN 201
>sp|P34487|YMJB_CAEEL Hypothetical protein F59B2.12 in chromosome III
Length = 918
Score = 37.7 bits (86), Expect = 0.040
Identities = 31/168 (18%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Frame = +2
Query: 254 SQYTIVASKNSI-EQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNIN 430
+ + I K S+ + H S+ +L + +K S++ S++ ++ N + N+
Sbjct: 230 TSHNITNRKGSVGDSHNAASDAHSNFESLDAQG-NKKSQNYSKKAASASGSNADFESNL- 287
Query: 431 QSITSIPNTSMQSNFSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLAS 610
+S+ + TSM ++ F N + DK ++ ++ ++ + D S A ++ ++
Sbjct: 288 ESLKNADGTSMSNSTGNFNNTSYDKATAEEVMSKKNVNADGTSSMEA-------SHAGSN 340
Query: 611 ESNVPFRSGSIETMAVSDGTSVTVHTLDSRGSNPSLGSMRPQTGSIGD 754
S + SG +++ + H+ ++ N +L GSI +
Sbjct: 341 SSKINSASGQSSDLSMVGPNGIKSHSTSNKTDNYALDEANQSAGSISE 388
>sp|Q61115|PTC1_MOUSE Patched protein homolog 1 (PTC1) (PTC)
Length = 1434
Score = 37.4 bits (85), Expect = 0.053
Identities = 42/174 (24%), Positives = 64/174 (36%), Gaps = 18/174 (10%)
Frame = +2
Query: 254 SQYTIVASKNSIEQHKLKSNQGKPKSNLSMRSTDK-----------DSRHN------SQR 382
SQ T+ + Q++ + G P + + +T+ DSRH Q
Sbjct: 1213 SQTTVSGISEELRQYEAQQGAGGPAHQVIVEATENPVFARSTVVHPDSRHQPPLTPRQQP 1272
Query: 383 QIGSNSMNTEHPGNINQSITSIPNTSMQSN-FSVFQNLNEDKNLSQSNVANRSNDMDNVS 559
+ S S++ G Q P ++ + ++ E S +NR D
Sbjct: 1273 HLDSGSLSPGRQGQ--QPRRDPpreGLRPPPYRPRRDAFEISTEGHSGPSNR----DRSG 1326
Query: 560 RRSARVHCPRVTNNLASESNVPFRSGSIETMAVSDGTSVTVHTLDSRGSNPSLG 721
R AR H PR + A S+VP I T+ S +V VH G NP G
Sbjct: 1327 PRGARSHNPRNPTSTAMGSSVPSYCQPITTVTASASVTVAVHPPPGPGRNPRGG 1380
>sp|P70478|APC_RAT Adenomatous polyposis coli protein (APC protein)
Length = 2842
Score = 37.4 bits (85), Expect = 0.053
Identities = 43/212 (20%), Positives = 78/212 (36%), Gaps = 8/212 (3%)
Frame = +2
Query: 113 DTQTTEPQSNFEPDFNPIDNFEIY---NTIYSDDQASLIQPPCYEEAIKCSQYTIVASKN 283
D Q E + PD D I N+I S + C +I++ K+
Sbjct: 2081 DIQRPESEHGLSPDSENFDWKAIQEGANSIVSSLHQAAAAAACLSRQASSDSDSILSLKS 2140
Query: 284 SIEQHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSM 463
+ + G P + + H R + +T I N +
Sbjct: 2141 GV-------SLGSPFHLTPDQEEKPFTSHKGPRILKPGEKSTLEAKKIESE-----NKGI 2188
Query: 464 QSNFSVFQNLNEDKNLSQSNVANR-----SNDMDNVSRRSARVHCPRVTNNLASESNVPF 628
+ V+++L K S S ++++ +M ++SR +H P V N+ +S S V
Sbjct: 2189 KGGKKVYKSLITGKIRSNSEISSQMKQPLQTNMPSISRGRTMIHIPGVRNSSSSTSPVSK 2248
Query: 629 RSGSIETMAVSDGTSVTVHTLDSRGSNPSLGS 724
+ ++T A + V T RG+ P++ S
Sbjct: 2249 KGPPLKTPASKSPSEGPVATTSPRGTKPAVKS 2280
>sp|Q8CQQ7|Y2353_STAES Hypothetical protein SE2353
Length = 300
Score = 37.4 bits (85), Expect = 0.053
Identities = 30/129 (23%), Positives = 58/129 (44%)
Frame = +2
Query: 293 QHKLKSNQGKPKSNLSMRSTDKDSRHNSQRQIGSNSMNTEHPGNINQSITSIPNTSMQSN 472
Q ++S Q + +++ + KDS S SNS + +QS T+ + S +N
Sbjct: 156 QEAIQSAQEQQSKDIAKANELKDSELRSHFDSMSNSASISQSNVASQSTTASLSQSESAN 215
Query: 473 FSVFQNLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRSGSIETM 652
S+ +L+E +++ + N +++++ S T+ SES S E++
Sbjct: 216 DSMSSSLSESNSITSESNTNSKSEIESKSTS---------TSEFLSESGSVSNSEKSESI 266
Query: 653 AVSDGTSVT 679
+ S TS T
Sbjct: 267 SHSQSTSAT 275
>sp|Q12361|GPR1_YEAST G protein-coupled receptor GPR1
Length = 961
Score = 36.2 bits (82), Expect = 0.12
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 6/174 (3%)
Frame = +2
Query: 146 EPDFNPIDNFEIYNTIYSDDQASLIQPPCYEEAIKCSQYTIVASKNSIEQHKLKSNQGKP 325
+PD + F+ N I + + + ++ + K+S+ H+ S Q
Sbjct: 404 QPDLERNNPFDCENDITLNPSELVSKQKEHKVTFSVENEGLDTRKSSMLGHQTFSCQNSL 463
Query: 326 KSNLSM---RSTDKDSRHNSQRQ---IGSNSMNTEHPGNINQSITSIPNTSMQSNFSVFQ 487
+S L+M ++ + D N + + I +NS N + N N + N S +N
Sbjct: 464 ESPLAMYDNKNDNSDITSNIKEKGGIINNNSNNDDDDNNNNNDNDNDNNNSNNNN----- 518
Query: 488 NLNEDKNLSQSNVANRSNDMDNVSRRSARVHCPRVTNNLASESNVPFRSGSIET 649
N N + N + +N N +N+ +N + S + NN N+P S T
Sbjct: 519 NNNNNNNNNNNNNNNNNNNNNNNNNNSNNIKNNVDNNNTNPADNIPTLSNEAFT 572
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,864,918
Number of Sequences: 369166
Number of extensions: 1767678
Number of successful extensions: 4904
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4879
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)