Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_L12
(459 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 259 2e-69
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 258 3e-69
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 257 8e-69
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 256 1e-68
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 256 1e-68
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 256 2e-68
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 255 3e-68
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 255 4e-68
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 252 2e-67
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 244 7e-65
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 259 bits (662), Expect = 2e-69
Identities = 123/142 (86%), Positives = 135/142 (95%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2 GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
IVKVAN SL+AL+KGKKERPR+
Sbjct: 122 IVKVANTSLIALFKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 258 bits (660), Expect = 3e-69
Identities = 124/142 (87%), Positives = 135/142 (95%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVA+VSLLALYK KKERPR+
Sbjct: 122 VVKVASVSLLALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 257 bits (657), Expect = 8e-69
Identities = 124/142 (87%), Positives = 133/142 (93%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 256 bits (655), Expect = 1e-68
Identities = 124/142 (87%), Positives = 132/142 (92%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GK G+RT RKLR HR+ ++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 256 bits (655), Expect = 1e-68
Identities = 124/142 (87%), Positives = 133/142 (93%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GK G+RT RKLR HR++++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 256 bits (653), Expect = 2e-68
Identities = 124/142 (87%), Positives = 131/142 (92%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GK G+RT RKLR HR+ +W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 255 bits (652), Expect = 3e-68
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP GIR RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
IVKVAN SL+AL+KGKKERPR+
Sbjct: 122 IVKVANTSLIALFKGKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 255 bits (651), Expect = 4e-68
Identities = 123/142 (86%), Positives = 133/142 (93%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP GIRT RK HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 252 bits (644), Expect = 2e-67
Identities = 123/142 (86%), Positives = 132/142 (92%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKP G+RT RK HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2 GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
+VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
Length = 143
Score = 244 bits (623), Expect = 7e-65
Identities = 118/142 (83%), Positives = 129/142 (90%)
Frame = +2
Query: 29 GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
GKPSG+R RKL R+ ++W D YKK+HLGT K+NPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2 GKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQ 61
Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
PNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEENDEVLV+GFGRSGHAVGDIPGVRFK
Sbjct: 62 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFK 121
Query: 389 IVKVANVSLLALYKGKKERPRA 454
IVKVANVSL AL+ GKKERPR+
Sbjct: 122 IVKVANVSLHALFTGKKERPRS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,031,772
Number of Sequences: 369166
Number of extensions: 985065
Number of successful extensions: 3511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)