Planarian EST Database


Dr_sW_001_L12

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_001_L12
         (459 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q19877|RS23_CAEEL  40S ribosomal protein S23                   259   2e-69
sp|Q9GRJ3|RS23_LUMRU  40S ribosomal protein S23                   258   3e-69
sp|Q86FP7|RS23_DERVA  40S ribosomal protein S23                   257   8e-69
sp|P62267|RS23_MOUSE  40S ribosomal protein S23 >gi|54039461...   256   1e-68
sp|Q90YQ1|RS23_ICTPU  40S ribosomal protein S23                   256   1e-68
sp|Q6SA96|RS23_PIG  40S ribosomal protein S23                     256   2e-68
sp|P90707|RS23_BRUMA  40S ribosomal protein S23                   255   3e-68
sp|Q962Q7|RS23_SPOFR  40S ribosomal protein S23 >gi|52000789...   255   4e-68
sp|Q8T3U2|RS23_DROME  40S ribosomal protein S23                   252   2e-67
sp|Q8I7D5|RS23_CIOIN  40S ribosomal protein S23                   244   7e-65
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
          Length = 143

 Score =  259 bits (662), Expect = 2e-69
 Identities = 123/142 (86%), Positives = 135/142 (95%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2   GKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           IVKVAN SL+AL+KGKKERPR+
Sbjct: 122 IVKVANTSLIALFKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
          Length = 143

 Score =  258 bits (660), Expect = 3e-69
 Identities = 124/142 (87%), Positives = 135/142 (95%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKPRGLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVA+VSLLALYK KKERPR+
Sbjct: 122 VVKVASVSLLALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
          Length = 143

 Score =  257 bits (657), Expect = 8e-69
 Identities = 124/142 (87%), Positives = 133/142 (93%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKPRGLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
 sp|P62298|RS23_CHILA 40S ribosomal protein S23
 sp|P62266|RS23_HUMAN 40S ribosomal protein S23
 sp|P62268|RS23_RAT 40S ribosomal protein S23
          Length = 143

 Score =  256 bits (655), Expect = 1e-68
 Identities = 124/142 (87%), Positives = 132/142 (92%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GK  G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
          Length = 143

 Score =  256 bits (655), Expect = 1e-68
 Identities = 124/142 (87%), Positives = 133/142 (93%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GK  G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
          Length = 143

 Score =  256 bits (653), Expect = 2e-68
 Identities = 124/142 (87%), Positives = 131/142 (92%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GK  G+RT RKLR HR+  +W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYKGKKERPR+
Sbjct: 122 VVKVANVSLLALYKGKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
          Length = 143

 Score =  255 bits (652), Expect = 3e-68
 Identities = 123/142 (86%), Positives = 132/142 (92%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP GIR  RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKPKGIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           IVKVAN SL+AL+KGKKERPR+
Sbjct: 122 IVKVANTSLIALFKGKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
          Length = 143

 Score =  255 bits (651), Expect = 4e-68
 Identities = 123/142 (86%), Positives = 133/142 (93%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP GIRT RK   HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKPRGIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
          Length = 143

 Score =  252 bits (644), Expect = 2e-67
 Identities = 123/142 (86%), Positives = 132/142 (92%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKP G+RT RK   HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQ
Sbjct: 2   GKPRGLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           +VKVANVSLLALYK KKERPR+
Sbjct: 122 VVKVANVSLLALYKEKKERPRS 143
>sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23
          Length = 143

 Score =  244 bits (623), Expect = 7e-65
 Identities = 118/142 (83%), Positives = 129/142 (90%)
 Frame = +2

Query: 29  GKPSGIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQ 208
           GKPSG+R  RKL   R+ ++W D  YKK+HLGT  K+NPFGGASHAKGIVLEK+GVEAKQ
Sbjct: 2   GKPSGLRCARKLXNRRRDQKWHDXXYKKSHLGTALKANPFGGASHAKGIVLEKIGVEAKQ 61

Query: 209 PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFK 388
           PNSAIRKCVRVQLIKNGKKITAFVPNDGCLN+IEENDEVLV+GFGRSGHAVGDIPGVRFK
Sbjct: 62  PNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLVAGFGRSGHAVGDIPGVRFK 121

Query: 389 IVKVANVSLLALYKGKKERPRA 454
           IVKVANVSL AL+ GKKERPR+
Sbjct: 122 IVKVANVSLHALFTGKKERPRS 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,031,772
Number of Sequences: 369166
Number of extensions: 985065
Number of successful extensions: 3511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)