Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_L08
(481 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51880|FABPB_MOUSE Fatty acid-binding protein, brain (B-... 107 2e-23
sp|Q09139|FABB_BOVIN Fatty acid-binding protein, brain (B-F... 106 3e-23
sp|P55051|FABPB_RAT Fatty acid-binding protein, brain (B-FA... 105 7e-23
sp|O15540|FABPB_HUMAN Fatty acid-binding protein, brain (B-... 100 1e-21
sp|P07483|FABPH_RAT Fatty acid-binding protein, heart (H-FA... 100 2e-21
sp|O02772|FABH_PIG Fatty acid-binding protein, heart (H-FAB... 100 2e-21
sp|P10790|FABPH_BOVIN Fatty acid-binding protein, heart (H-... 100 3e-21
sp|P05413|FABPH_HUMAN Fatty acid-binding protein, heart (H-... 100 3e-21
sp|P11404|FABPH_MOUSE Fatty acid-binding protein, heart (H-... 99 5e-21
sp|Q99P61|FABPH_SPETR Fatty acid-binding protein, heart (H-... 98 9e-21
>sp|P51880|FABPB_MOUSE Fatty acid-binding protein, brain (B-FABP) (Brain lipid-binding
protein) (BLBP)
Length = 132
Score = 107 bits (266), Expect = 2e-23
Identities = 58/132 (43%), Positives = 77/132 (58%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAF W LT+++NF+ YMK LGVG TR++ N +KPT I+ G I
Sbjct: 2 VDAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGGKVVIRTQCTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EEFEETS DD+ CKS+V+ D K +H QK D + TRE+ DGK V+TL F
Sbjct: 62 EINFQLGEEFEETSIDDRNCKSVVRLDGD-KLIHVQKWDGKETNCTREIKDGKMVVTLTF 120
Query: 372 DKVVATRKYERS 407
+VA R YE++
Sbjct: 121 GDIVAVRCYEKA 132
>sp|Q09139|FABB_BOVIN Fatty acid-binding protein, brain (B-FABP)
Length = 131
Score = 106 bits (264), Expect = 3e-23
Identities = 58/131 (44%), Positives = 77/131 (58%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAFVG W LTE++NF+ YMK LGVG TR++ N +KPT I+V I
Sbjct: 1 VDAFVGTWKLTESQNFDEYMKSLGVGFATRQVGNMTKPTLIISVNGDTEIIKTQSTFKNT 60
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EEF++T+ADDQ KSIV + K VH QK D ++ + RE++ GK +LTL
Sbjct: 61 EISFHLGEEFDDTTADDQKVKSIV-TLDGGKLVHVQKWDGQESSLVREMVAGKLILTLTH 119
Query: 372 DKVVATRKYER 404
VVA R YE+
Sbjct: 120 GDVVAVRHYEK 130
>sp|P55051|FABPB_RAT Fatty acid-binding protein, brain (B-FABP) (Brain lipid-binding
protein) (BLBP)
Length = 132
Score = 105 bits (261), Expect = 7e-23
Identities = 57/132 (43%), Positives = 76/132 (57%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAF W LT+++NF+ YMK LGVG TR++ N +KPT I+ G I
Sbjct: 2 VDAFCATWKLTDSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGGKVVIRTQCTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EEFEETS DD+ CKS+++ D K +H QK D + RE+ DGK V+TL F
Sbjct: 62 EISFQLGEEFEETSIDDRNCKSVIRLDGD-KLIHVQKWDGKETNCVREIKDGKMVVTLTF 120
Query: 372 DKVVATRKYERS 407
VVA R YE++
Sbjct: 121 GDVVAVRCYEKA 132
>sp|O15540|FABPB_HUMAN Fatty acid-binding protein, brain (B-FABP) (Brain lipid-binding
protein) (BLBP) (Mammary derived growth inhibitor
related)
Length = 132
Score = 100 bits (250), Expect = 1e-21
Identities = 56/132 (42%), Positives = 74/132 (56%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
++AF W LT ++NF+ YMK LGVG TR++ N +KPT I+ I
Sbjct: 2 VEAFCATWKLTNSQNFDEYMKALGVGFATRQVGNVTKPTVIISQEGDKVVIRTLSTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EEF+ET+ADD+ CKS+V D K VH QK D + RE+ DGK V+TL F
Sbjct: 62 EISFQLGEEFDETTADDRNCKSVVSLDGD-KLVHIQKWDGKETNFVREIKDGKMVMTLTF 120
Query: 372 DKVVATRKYERS 407
VVA R YE++
Sbjct: 121 GDVVAVRHYEKA 132
>sp|P07483|FABPH_RAT Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein)
Length = 133
Score = 100 bits (248), Expect = 2e-21
Identities = 55/130 (42%), Positives = 74/130 (56%)
Frame = +3
Query: 15 DAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXXX 194
DAFVG W L +++NF++YMK LGVG TR++A+ +KPT I I
Sbjct: 3 DAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTITIKTHSTFKNTE 62
Query: 195 XXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEFD 374
EF+E +ADD+ KS+V + K VH QK D + +TREL DGK +LTL
Sbjct: 63 ISFQLGVEFDEVTADDRKVKSVV-TLDGGKLVHVQKWDGQETTLTRELSDGKLILTLTHG 121
Query: 375 KVVATRKYER 404
VV+TR YE+
Sbjct: 122 NVVSTRTYEK 131
>sp|O02772|FABH_PIG Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein)
Length = 133
Score = 100 bits (248), Expect = 2e-21
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAF G W L +++NF++YMK +GVG TR++AN +KPT I V I
Sbjct: 2 VDAFAGTWKLVDSKNFDDYMKSIGVGFATRQVANMTKPTTIIEVNGDTIIIKTQSTFKST 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EF+ET+ADD+ KSIV + K VH QK + + + REL+DGK +LTL
Sbjct: 62 EISFKLGVEFDETTADDRKVKSIV-TLDGGKLVHLQKWNGQETTLVRELVDGKLILTLTH 120
Query: 372 DKVVATRKYER 404
V TR YE+
Sbjct: 121 GSAVCTRTYEK 131
>sp|P10790|FABPH_BOVIN Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein) (Mammary-derived growth inhibitor)
(MDGI)
Length = 133
Score = 99.8 bits (247), Expect = 3e-21
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAFVG W L +++NF++YMK LGVG TR++ N +KPT I V I
Sbjct: 2 VDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVGNMTKPTTIIEVNGDTVIIKTQSTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EF+ET+ADD+ KSIV + K VH QK + + + RE++DGK +LTL
Sbjct: 62 EISFKLGVEFDETTADDRKVKSIV-TLDGGKLVHVQKWNGQETSLVREMVDGKLILTLTH 120
Query: 372 DKVVATRKYER 404
V TR YE+
Sbjct: 121 GTAVCTRTYEK 131
>sp|P05413|FABPH_HUMAN Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein) (Muscle fatty acid-binding
protein) (M-FABP) (Mammary-derived growth inhibitor)
(MDGI)
Length = 133
Score = 99.8 bits (247), Expect = 3e-21
Identities = 54/131 (41%), Positives = 75/131 (57%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAF+G W L +++NF++YMK LGVG TR++A+ +KPT I + +
Sbjct: 2 VDAFLGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDILTLKTHSTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
EF+ET+ADD+ KSIV + K VH QK D + + RELIDGK +LTL
Sbjct: 62 EISFKLGVEFDETTADDRKVKSIV-TLDGGKLVHLQKWDGQETTLVRELIDGKLILTLTH 120
Query: 372 DKVVATRKYER 404
V TR YE+
Sbjct: 121 GTAVCTRTYEK 131
>sp|P11404|FABPH_MOUSE Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein) (Mammary-derived growth inhibitor)
(MDGI)
Length = 133
Score = 99.0 bits (245), Expect = 5e-21
Identities = 53/130 (40%), Positives = 75/130 (57%)
Frame = +3
Query: 15 DAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXXX 194
DAFVG W L +++NF++YMK LGVG TR++A+ +KPT I I
Sbjct: 3 DAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTITIKTQSTFKNTE 62
Query: 195 XXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEFD 374
EF+E +ADD+ KS+V + K +H QK + + +TREL+DGK +LTL
Sbjct: 63 INFQLGIEFDEVTADDRKVKSLV-TLDGGKLIHVQKWNGQETTLTRELVDGKLILTLTHG 121
Query: 375 KVVATRKYER 404
VV+TR YE+
Sbjct: 122 SVVSTRTYEK 131
>sp|Q99P61|FABPH_SPETR Fatty acid-binding protein, heart (H-FABP) (Heart-type fatty
acid-binding protein)
Length = 133
Score = 98.2 bits (243), Expect = 9e-21
Identities = 54/131 (41%), Positives = 74/131 (56%)
Frame = +3
Query: 12 MDAFVGKWHLTETENFENYMKQLGVGVITRKLANSSKPTQEITVTDGVTHIXXXXXXXXX 191
+DAFVG W L +++NF++YMK LGVG TR++A+ +KPT I +
Sbjct: 2 VDAFVGTWKLVDSKNFDDYMKSLGVGFATRQVASMTKPTTIIEKNGDTIILKTQSTFKNT 61
Query: 192 XXXXXXXEEFEETSADDQICKSIVKKVSDTKFVHTQKRDKSDNVMTRELIDGKYVLTLEF 371
+EF+ET+ADD+ KS V + K VH QK D + + REL DGK +LTL
Sbjct: 62 EISFQLGKEFDETTADDRKVKSTV-TLDGGKLVHVQKWDGQETTLVRELNDGKLILTLTH 120
Query: 372 DKVVATRKYER 404
VV TR YE+
Sbjct: 121 GSVVCTRTYEK 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,621,918
Number of Sequences: 369166
Number of extensions: 722446
Number of successful extensions: 1760
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1672
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)