Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K17
(887 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA lig... 376 e-104
sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA lig... 375 e-104
sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA lig... 375 e-104
sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA lig... 355 1e-97
sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA lig... 343 3e-94
sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA lig... 338 1e-92
sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Ly... 322 7e-88
sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA lig... 300 4e-81
sp|Q9KGG4|SYK_BACHD Lysyl-tRNA synthetase (Lysine--tRNA lig... 231 2e-60
sp|Q9X231|SYK_THEMA Lysyl-tRNA synthetase (Lysine--tRNA lig... 228 1e-59
>sp|Q15046|SYK_HUMAN Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 376 bits (965), Expect = e-104
Identities = 178/298 (59%), Positives = 234/298 (78%), Gaps = 3/298 (1%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRY 180
EF I ++RGD+IGV G+PGK+K GE+SIIP I +LSP L +PHLHFGLKD+E+RY
Sbjct: 168 EFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRY 227
Query: 181 RFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYH 360
R R LD+ +N V Q F+IR KI+++I+ FL ++GF+++ETPM+N+IPGGA AKPF TYH
Sbjct: 228 RQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 287
Query: 361 NDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADY 540
N+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY
Sbjct: 288 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADY 347
Query: 541 FDLITVTEDLLSNLVKELFGDYIVKYNKD---GKTYEIDFKPPYQRIDMMTGLEEALKMK 711
DL+ +TE ++S +VK + G Y V Y+ D G+ Y++DF PP++RI+M+ LE+AL MK
Sbjct: 348 HDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMK 407
Query: 712 LPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
LP TEE+R ILD IC VEC PRTTARLLDKLVGE+LE CINPTFI +H
Sbjct: 408 LPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDH 465
>sp|P37879|SYK_CRIGR Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 597
Score = 375 bits (964), Expect = e-104
Identities = 178/298 (59%), Positives = 234/298 (78%), Gaps = 3/298 (1%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRY 180
EF I ++RGD+IGV G+PGK+K GE+SIIP I +LSP L +PHLHFGLKD+E+RY
Sbjct: 168 EFVRINNKLRRGDIIGVQGNPGKTKKGELSIIPYEITLLSPCLHMLPHLHFGLKDKETRY 227
Query: 181 RFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYH 360
R R LD+ +N V Q F++R KI+++I+ FL ++GF+++ETPM+N+IPGGA AKPF TYH
Sbjct: 228 RQRYLDLILNDFVRQKFIVRAKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 287
Query: 361 NDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADY 540
N+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY
Sbjct: 288 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADY 347
Query: 541 FDLITVTEDLLSNLVKELFGDYIVKYNKD---GKTYEIDFKPPYQRIDMMTGLEEALKMK 711
DL+ +TE +LS +VK + G Y + Y+ D G+ YEIDF PP++RI M+ LE+AL +K
Sbjct: 348 HDLMEITEKMLSGMVKSITGSYKITYHPDGPEGEAYEIDFTPPFRRISMVEELEKALGVK 407
Query: 712 LPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
LP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE CINPTFI +H
Sbjct: 408 LPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDH 465
>sp|Q99MN1|SYK_MOUSE Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 595
Score = 375 bits (963), Expect = e-104
Identities = 176/298 (59%), Positives = 235/298 (78%), Gaps = 3/298 (1%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRY 180
EF I ++RGD+IGV G+PGK+K GE+SIIP+ I +LSP L +PHLHFGLKD+E+RY
Sbjct: 166 EFVHINNKLRRGDIIGVEGNPGKTKKGELSIIPQEITLLSPCLHMLPHLHFGLKDKETRY 225
Query: 181 RFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYH 360
R R LD+ +N V Q F++R KI+++I+ FL ++GF+++ETPM+N+IPGGA AKPF TYH
Sbjct: 226 RQRYLDLILNDFVRQKFIVRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYH 285
Query: 361 NDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADY 540
N+ +M++Y+RIAPEL+ K L++GG++RV+EIG+QFRNE +DLTHNPEFTTCEFYMA+ADY
Sbjct: 286 NELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADY 345
Query: 541 FDLITVTEDLLSNLVKELFGDYIVKYNKD---GKTYEIDFKPPYQRIDMMTGLEEALKMK 711
DL+ +TE +LS +VK + G Y + Y+ D G+ YE+DF PP++RI M+ LE+AL +K
Sbjct: 346 HDLMEITEKMLSGMVKSITGSYKITYHPDGPEGQAYEVDFTPPFRRISMVEELEKALGVK 405
Query: 712 LPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
LP + TEE+R ILD IC VEC PRTTARLLDKLVGE+LE CI+PTFI +H
Sbjct: 406 LPETSLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCISPTFICDH 463
>sp|Q22099|SYK_CAEEL Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 572
Score = 355 bits (910), Expect = 1e-97
Identities = 164/299 (54%), Positives = 227/299 (75%), Gaps = 4/299 (1%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRY 180
+F + + +KRGD++G G ++K GE+S+IP I L+P L +PH HFGLKD+E R+
Sbjct: 147 DFVTLHDRIKRGDIVGFTGRATRTKAGELSLIPNEILQLTPCLHMLPHSHFGLKDKELRF 206
Query: 181 RFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYH 360
R R LD+ +NP V FVIR KI++F++ +L +GF++VETP++N I GGA AKPF T+H
Sbjct: 207 RKRYLDLILNPRVKDNFVIRSKIITFLRRYLDNLGFLEVETPIMNQIAGGATAKPFITHH 266
Query: 361 NDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADY 540
ND +M+++LR+APEL+ K L++GG++RV+E+G+ FRNE +DLTHNPEFTTCEFYMA+ADY
Sbjct: 267 NDLDMNLFLRVAPELYHKMLVVGGIDRVYEVGRLFRNEGIDLTHNPEFTTCEFYMAYADY 326
Query: 541 FDLITVTEDLLSNLVKELFGDYIVKYNKDG----KTYEIDFKPPYQRIDMMTGLEEALKM 708
D+I +TEDLLS++V + G Y ++Y+ +G YE+DF PP++R+ M GL E L
Sbjct: 327 EDVIQLTEDLLSSMVMSIKGTYKIEYHPNGPNTEPVYEVDFTPPFKRVHMYDGLAEKLGA 386
Query: 709 KLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
LP P+ L TEE+R + DK+C DNNV+CSAPRTTARLLDKLVGEYLE I+PTF++ H
Sbjct: 387 TLPDPSTLHTEEAREVFDKLCRDNNVDCSAPRTTARLLDKLVGEYLESTFISPTFLIGH 445
>sp|Q6F2U9|SYK_ORYSA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 602
Score = 343 bits (881), Expect = 3e-94
Identities = 173/318 (54%), Positives = 226/318 (71%), Gaps = 23/318 (7%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLH---------- 150
EF + ++KRGD++GV G+PGKSK GE+SI PK I +LSP L MP
Sbjct: 175 EFIKFHSTLKRGDIVGVCGYPGKSKRGELSIFPKKIVVLSPCLHMMPRQKSEGSAVPTPW 234
Query: 151 ----------FGLKDQESRYRFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVE 300
+ L+DQE+RYR R LD+ +N EV IF R K+VSFI+ FL + F++VE
Sbjct: 235 APGMGRNIEKYVLRDQETRYRQRYLDLMVNHEVRHIFKTRSKVVSFIRKFLDGLDFLEVE 294
Query: 301 TPMLNMIPGGAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESV 480
TPM+NMI GGAAA+PF T+HN+ NM +Y+RIAPEL+LKEL++GG++RV+EIGKQFRNE +
Sbjct: 295 TPMMNMIAGGAAARPFVTHHNELNMRLYMRIAPELYLKELVVGGLDRVYEIGKQFRNEGI 354
Query: 481 DLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEIDF 651
DLTHNPEFTTCEFYMA+ADY DLI +TE +LS +VKEL G Y +KY+ +G EIDF
Sbjct: 355 DLTHNPEFTTCEFYMAYADYNDLIELTETMLSGMVKELTGGYKIKYHANGVEKPPIEIDF 414
Query: 652 KPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDKL 831
PP+++IDM+ LE KL +P +L ++E+ L CA +V+C P+TT RLLDKL
Sbjct: 415 TPPFRKIDMIEELE--AMAKLNIPKDLSSDEANKYLIDACAKYDVKCPPPQTTTRLLDKL 472
Query: 832 VGEYLEEKCINPTFIMNH 885
VG +LEE C+NPTFI+NH
Sbjct: 473 VGHFLEETCVNPTFIINH 490
>sp|Q9ZPI1|SYK_ARATH Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 626
Score = 338 bits (867), Expect = 1e-92
Identities = 174/318 (54%), Positives = 225/318 (70%), Gaps = 24/318 (7%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLH---------- 150
EF ++ + KRGD++GV+G PGK+K GE+SI P+S +LS L MP
Sbjct: 183 EFLKLHSNAKRGDIVGVIGFPGKTKRGELSIFPRSFILLSHCLHMMPRKADNVNAKKPEI 242
Query: 151 -----------FGLKDQESRYRFRSLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQV 297
+ LKDQESRYR R LDM +N EV QIF R KI+S+++ FL F++V
Sbjct: 243 WVPGQTRNPEAYVLKDQESRYRQRHLDMILNVEVRQIFRTRAKIISYVRRFLDNKNFLEV 302
Query: 298 ETPMLNMIPGGAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNES 477
ETPM+NMI GGAAA+PF T+HND +M +Y+RIAPEL+LK+LI+GG+ RV+EIGKQFRNE
Sbjct: 303 ETPMMNMIAGGAAARPFVTHHNDLDMRLYMRIAPELYLKQLIVGGLERVYEIGKQFRNEG 362
Query: 478 VDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNKDG---KTYEID 648
+DLTHNPEFTTCEFYMAFADY DL+ +TE +LS +VKEL G Y +KYN +G EID
Sbjct: 363 IDLTHNPEFTTCEFYMAFADYNDLMEMTEVMLSGMVKELTGGYKIKYNANGYDKDPIEID 422
Query: 649 FKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECSAPRTTARLLDK 828
F PP++RI+M+ LE+ KL +P +L +EE+ L CA +V+C P+TTARLLDK
Sbjct: 423 FTPPFRRIEMIGELEKV--AKLNIPKDLASEEANKYLIDACARFDVKCPPPQTTARLLDK 480
Query: 829 LVGEYLEEKCINPTFIMN 882
LVGE+LE C+NPTFI+N
Sbjct: 481 LVGEFLEPTCVNPTFIIN 498
>sp|P15180|SYKC_YEAST Lysyl-tRNA synthetase, cytoplasmic (Lysine--tRNA ligase) (LysRS)
Length = 591
Score = 322 bits (826), Expect = 7e-88
Identities = 157/296 (53%), Positives = 214/296 (72%), Gaps = 9/296 (3%)
Frame = +1
Query: 25 VKRGDVIGVVGHPGKSKL-----GEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRYRFR 189
+KRGD++GV G+ G+++ GEVS+ +Q+L+P L +P HFG KDQE+RYR R
Sbjct: 174 LKRGDIVGVEGYVGRTQPKKGGEGEVSVFVSRVQLLTPCLHMLPADHFGFKDQETRYRKR 233
Query: 190 SLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYHNDF 369
LD+ MN + F+ R +I+ +I+ FL Q FI+VETPM+N+I GGA AKPF T+HND
Sbjct: 234 YLDLIMNKDARNRFITRSEIIRYIRRFLDQRKFIEVETPMMNVIAGGATAKPFITHHNDL 293
Query: 370 NMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDL 549
+MDMY+RIAPELFLK+L++GG++RV+EIG+QFRNE +D+THNPEFTTCEFY A+AD +DL
Sbjct: 294 DMDMYMRIAPELFLKQLVVGGLDRVYEIGRQFRNEGIDMTHNPEFTTCEFYQAYADVYDL 353
Query: 550 ITVTEDLLSNLVKELFGDYIVKYNKD----GKTYEIDFKPPYQRIDMMTGLEEALKMKLP 717
+ +TE + S +VKE+ G YI+KY+ D K E++F P++RI+M+ LE+ +K P
Sbjct: 354 MDMTELMFSEMVKEITGSYIIKYHPDPADPAKELELNFSRPWKRINMIEELEKVFNVKFP 413
Query: 718 LPTELGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
+L T E+ L KI DN +EC P T AR+LDKLVGE LE+ CINPTFI H
Sbjct: 414 SGDQLHTAETGEFLKKILVDNKLECPPPLTNARMLDKLVGE-LEDTCINPTFIFGH 468
>sp|Q43776|SYK_LYCES Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 588
Score = 300 bits (768), Expect = 4e-81
Identities = 149/330 (45%), Positives = 216/330 (65%), Gaps = 35/330 (10%)
Frame = +1
Query: 1 EFSEIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHL----------- 147
+FS VKRGD+IGV G+PGKSK GE+SI K +L+P L +P
Sbjct: 150 QFSNYQSGVKRGDIIGVRGYPGKSKRGELSIFAKPFIVLAPCLHMLPRRLTSSIVDETRT 209
Query: 148 ---------------------HFGLKDQESRYRFRSLDMQMNPEVIQIFVIRDKIVSFIQ 264
+ L+DQE+RYR R LD+ MNPEV +F R +I+S+I+
Sbjct: 210 QNFQGITAYDTWTPGDLRNPESYVLRDQETRYRQRYLDLMMNPEVRALFRTRARIISYIR 269
Query: 265 HFLRQMGFIQVETPMLNMIPGGAAAKPFKTYHNDFNMDMYLRIAPELFLKELIIGGMNRV 444
FL + F++VETP +N+ GGA+A+PF T+HN+ + ++ +R++PEL+LK+L++GG +RV
Sbjct: 270 SFLDNLEFLEVETPSMNLTAGGASARPFITHHNELDTELLIRVSPELYLKKLVVGGFDRV 329
Query: 445 FEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTEDLLSNLVKELFGDYIVKYNK 624
+E+GK FRNE +DLTH+PEFT CE YMA+ADY DL+ +TE LLS +VK+L G Y ++Y+
Sbjct: 330 YELGKHFRNEGMDLTHSPEFTMCELYMAYADYNDLMDLTEQLLSGMVKDLTGSYKIRYHA 389
Query: 625 DG---KTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEESRLILDKICADNNVECS 795
+G + EIDF PP+++IDM++ LE+ + +P +L +E + L +C +V+C
Sbjct: 390 NGLDNEPIEIDFTPPFRKIDMLSELEKV--ANISIPRDLSSESANKHLVDVCEKFDVKCP 447
Query: 796 APRTTARLLDKLVGEYLEEKCINPTFIMNH 885
P TT RLLDKLVG ++E CINPTFI+NH
Sbjct: 448 PPHTTTRLLDKLVGHFIEVNCINPTFIINH 477
>sp|Q9KGG4|SYK_BACHD Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 501
Score = 231 bits (589), Expect = 2e-60
Identities = 115/292 (39%), Positives = 188/292 (64%)
Frame = +1
Query: 10 EIVESVKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRYRFR 189
++ S+ GD++GV G K+K+GE+S+ + Q+L+ SL+ +P + GLKD E RYR R
Sbjct: 103 DLFTSIDIGDIVGVKGVAFKTKVGELSVKVQDFQLLTKSLRPLPDKYHGLKDVEQRYRQR 162
Query: 190 SLDMQMNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYHNDF 369
LD+ +NPEV FV+R KI+ ++ +L G+++VETP ++ IPGGA+A+PF T+HN
Sbjct: 163 YLDLIVNPEVRDTFVLRSKILQSMRRYLDDRGYLEVETPTMHSIPGGASARPFVTHHNAL 222
Query: 370 NMDMYLRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDL 549
+M +Y+RIA EL LK LI+GGM +V+EIG+ FRNE V HNPEFT E Y A+ADY D+
Sbjct: 223 DMTLYMRIAIELHLKRLIVGGMEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYNDI 282
Query: 550 ITVTEDLLSNLVKELFGDYIVKYNKDGKTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTE 729
+ +TE L++++ K++ G + Y + +E++ +P ++R+ M+ ++E + + E
Sbjct: 283 MELTELLIAHIAKDVLGTTTITYGE----HEVNLEPKWRRVHMVEAIKE--ETGVDFWNE 336
Query: 730 LGTEESRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
+ EE+R + ++NV T ++++ ++EEK I PTF+ H
Sbjct: 337 MSDEEAR----ALAKEHNVPVKETMTYGHVVNEFFEHFVEEKLIQPTFVYGH 384
>sp|Q9X231|SYK_THEMA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 502
Score = 228 bits (582), Expect = 1e-59
Identities = 127/287 (44%), Positives = 184/287 (64%)
Frame = +1
Query: 25 VKRGDVIGVVGHPGKSKLGEVSIIPKSIQILSPSLKQMPHLHFGLKDQESRYRFRSLDMQ 204
VK GD +GV G P KSK GE++I + +LS +L+ +P G+KD+E YR R L++
Sbjct: 103 VKIGDFVGVRGFPFKSKTGELTIYVQEYTLLSKALRPLPEKWHGIKDKEIIYRQRYLELI 162
Query: 205 MNPEVIQIFVIRDKIVSFIQHFLRQMGFIQVETPMLNMIPGGAAAKPFKTYHNDFNMDMY 384
+N E I+ F R K V I+ FL GFI+VETP+L+ + GGA A+PF T+ N F++DMY
Sbjct: 163 VNDEAIERFKKRFKAVRVIREFLNSRGFIEVETPILHYVTGGAEARPFVTHLNVFDIDMY 222
Query: 385 LRIAPELFLKELIIGGMNRVFEIGKQFRNESVDLTHNPEFTTCEFYMAFADYFDLITVTE 564
LRIAPEL+LK LI+GG +++EIGK FRNE + H+PEFT+ E Y A+ADY D++ +TE
Sbjct: 223 LRIAPELYLKRLIVGGFEKIYEIGKNFRNEGISYKHSPEFTSIEIYQAYADYNDMMDLTE 282
Query: 565 DLLSNLVKELFGDYIVKYNKDGKTYEIDFKPPYQRIDMMTGLEEALKMKLPLPTELGTEE 744
+L+ +VK G + Y GK EIDF PP++R+ M L+E L + + E+
Sbjct: 283 ELIVEVVKRTCGTLKISY--QGK--EIDFTPPWKRVRMRDFLKEKLGVDI-------LED 331
Query: 745 SRLILDKICADNNVECSAPRTTARLLDKLVGEYLEEKCINPTFIMNH 885
+L K ++ VE + A L+DKL + +EE+ +NPTFI++H
Sbjct: 332 PDEVLLKKLEEHGVELEI-KNRAHLIDKL-RDLVEEELVNPTFIIDH 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,518,175
Number of Sequences: 369166
Number of extensions: 2410959
Number of successful extensions: 7234
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6953
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)