Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K13
(867 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-r... 102 1e-21
sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-r... 102 2e-21
sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen relat... 80 7e-15
sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3) 75 2e-13
sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precur... 73 9e-13
sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precur... 73 9e-13
sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen relat... 73 9e-13
sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precur... 72 2e-12
sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 pr... 71 3e-12
sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related pro... 70 6e-12
>sp|Q9CYL5|GAPR1_MOUSE Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 102 bits (255), Expect = 1e-21
Identities = 62/146 (42%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Frame = +2
Query: 38 RALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVF 208
RA H P L + L + AQ Y+E LA T+ HS S GQ GENLA +SY+
Sbjct: 21 RAQHGVPPLKLCKKLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ------ 74
Query: 209 TGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQY 388
TG WY EIK Y F ++ S GHF+ +VWK+TK G G+A + +G+ +V +Y
Sbjct: 75 TGKDVADRWYSEIKSYNF-QQPGFTSGTGHFTAMVWKNTKKIGVGKASASDGSSFVVARY 133
Query: 389 KPAGNVI--GHFKENVLSPTGPPPKR 460
PAGN++ G F+ENV PPPK+
Sbjct: 134 FPAGNIVNQGFFEENV-----PPPKK 154
>sp|Q9H4G4|GAPR1_HUMAN Golgi-associated plant pathogenesis-related protein 1
(Golgi-associated PR-1 protein) (GAPR-1) (Glioma
pathogenesis-related protein 2) (GliPR 2)
Length = 154
Score = 102 bits (253), Expect = 2e-21
Identities = 60/139 (43%), Positives = 81/139 (58%), Gaps = 5/139 (3%)
Frame = +2
Query: 38 RALHHSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSV--SNGQYGENLA-SSYNSREGYVF 208
R H P L + +L + AQ Y+E LA T+ HS S GQ GENLA +SY+
Sbjct: 21 RQKHGVPPLKLCKNLNREAQQYSEALASTRILKHSPESSRGQCGENLAWASYDQ------ 74
Query: 209 TGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQY 388
TG WY EIK+Y F ++ S GHF+ +VWK+TK G G+A + +G+ +V +Y
Sbjct: 75 TGKEVADRWYSEIKNYNF-QQPGFTSGTGHFTAMVWKNTKKMGVGKASASDGSSFVVARY 133
Query: 389 KPAGNVI--GHFKENVLSP 439
PAGNV+ G F+ENVL P
Sbjct: 134 FPAGNVVNEGFFEENVLPP 152
>sp|P47032|PRY1_YEAST PRY1 protein precursor (Pathogen related in Sc 1)
Length = 299
Score = 80.1 bits (196), Expect = 7e-15
Identities = 55/134 (41%), Positives = 69/134 (51%), Gaps = 3/134 (2%)
Frame = +2
Query: 38 RALHH-SPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTG 214
RALH +P L+ LA AQ YA+ + T +HS G YGENLA Y+ G
Sbjct: 174 RALHKDTPALSWSDTLASYAQDYADNYDCSGTLTHS--GGPYGENLALGYD--------G 223
Query: 215 DAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDN--GNFVIVGQY 388
AA WY+EI +Y F +S GHF+QVVWK T G G G++VI Y
Sbjct: 224 PAAVDAWYNEISNYDFSNPG-FSSNTGHFTQVVWKSTTQVGCGIKTCGGAWGDYVIC-SY 281
Query: 389 KPAGNVIGHFKENV 430
PAGN G + +NV
Sbjct: 282 DPAGNYEGEYADNV 295
>sp|P47033|PRY3_YEAST PRY3 protein (Pathogen related in Sc 3)
Length = 881
Score = 75.1 bits (183), Expect = 2e-13
Identities = 58/166 (34%), Positives = 73/166 (43%), Gaps = 2/166 (1%)
Frame = +2
Query: 32 RLRALH-HSPKLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVF 208
+ RALH + LT LA AQ YA++ + +HS +G YGENLA Y
Sbjct: 35 KFRALHVDTAPLTWSDTLATYAQNYADQYDCSGVLTHS--DGPYGENLALGY-------- 84
Query: 209 TGDAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFG-RAQSDNGNFVIVGQ 385
T A WY EI Y + + GHF+QVVWK T G G + N IV
Sbjct: 85 TDTGAVDAWYGEISKYNYSNPG-FSESTGHFTQVVWKSTAEIGCGYKYCGTTWNNYIVCS 143
Query: 386 YKPAGNVIGHFKENVLSPTGPPPKREEPRIDANQNKVGTSKSSSKT 523
Y P GN +G F E V EP I + +S S+S T
Sbjct: 144 YNPPGNYLGEFAEEV-----------EPLISTVSSSSSSSSSTSTT 178
>sp|P09042|PR1C_TOBAC Pathogenesis-related protein 1C precursor (PR-1C)
Length = 168
Score = 73.2 bits (178), Expect = 9e-13
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 1/118 (0%)
Frame = +2
Query: 62 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 241
LT D +A AQ YA +LA HS +GQYGENLA G T A + W +
Sbjct: 53 LTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAWG----SGDFLTAAKAVEMWVN 106
Query: 242 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 412
E + Y + ++ GH++QVVW+++ G R Q +NG +++ Y P GNVIG
Sbjct: 107 EKQYYAHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYIVSCNYDPPGNVIG 164
>sp|P07053|PR1B_TOBAC Pathogenesis-related protein 1B precursor (PR-1B)
Length = 168
Score = 73.2 bits (178), Expect = 9e-13
Identities = 44/118 (37%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Frame = +2
Query: 62 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 241
LT D +A AQ Y +LA HS +GQYGENLA G T A + W D
Sbjct: 53 LTWDNGVAAYAQNYVSQLAADCNLVHS--HGQYGENLAQG----SGDFMTAAKAVEMWVD 106
Query: 242 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 412
E + Y + ++ GH++QVVW+++ G R + +NG +V+ Y P GNVIG
Sbjct: 107 EKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVKCNNGGYVVSCNYDPPGNVIG 164
>sp|P36110|PRY2_YEAST PRY2 protein precursor (Pathogen related in Sc 2)
Length = 329
Score = 73.2 bits (178), Expect = 9e-13
Identities = 53/135 (39%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Frame = +2
Query: 38 RALHHSP-KLTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTG 214
RALH LT LA AQ YA+ + HS G YGENLA Y + TG
Sbjct: 204 RALHKDTGSLTWSDTLATYAQNYADSYDCSGNLVHS--GGPYGENLALGYGT------TG 255
Query: 215 DAATQNWYDEIKDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDN--GNFVIVGQY 388
+ WY+EI Y + + GHF+QVVWK T G G G+++I Y
Sbjct: 256 --SVDAWYNEITSYDYSNPG-FSESAGHFTQVVWKGTSEVGCGLKSCGGEWGDYIICS-Y 311
Query: 389 KPAGNVIGHFKENVL 433
K AGNVIG F +NV+
Sbjct: 312 KAAGNVIGEFADNVM 326
>sp|P08299|PR1A_TOBAC Pathogenesis-related protein 1A precursor (PR-1A)
Length = 168
Score = 72.0 bits (175), Expect = 2e-12
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Frame = +2
Query: 62 LTIDWDLAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 241
LT D +A AQ YA +LA HS +GQYGENLA G T A + W D
Sbjct: 53 LTWDDQVAAYAQNYASQLAADCNLVHS--HGQYGENLAEG----SGDFMTAAKAVEMWVD 106
Query: 242 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 412
E + Y + ++ GH++QVVW+++ G R Q +NG +V+ Y P GN G
Sbjct: 107 EKQYYDHDSNTCAQGQVCGHYTQVVWRNSVRVGCARVQCNNGGYVVSCNYDPPGNYRG 164
>sp|Q04108|PR04_LYCES Pathogenesis-related leaf protein 4 precursor (P4)
Length = 159
Score = 71.2 bits (173), Expect = 3e-12
Identities = 46/118 (38%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Frame = +2
Query: 68 IDWD--LAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYD 241
+ WD LA AQ YA A HS + GENLA G FTG AA Q W
Sbjct: 47 MSWDANLASRAQNYANSRAGDCNLIHSGA----GENLAKG-----GGDFTGRAAVQLWVS 97
Query: 242 EIKDYKFGEESQINSKI-GHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 412
E DY + + K+ GH++QVVW+++ G GRA+ +NG + I Y P GN +G
Sbjct: 98 ERPDYNYATNQCVGGKMCGHYTQVVWRNSVRLGCGRARCNNGWWFISCNYDPVGNWVG 155
>sp|P11670|PRB1_TOBAC Basic form of pathogenesis-related protein 1 precursor (PRP 1)
Length = 177
Score = 70.5 bits (171), Expect = 6e-12
Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Frame = +2
Query: 74 WD--LAKSAQAYAEKLAKTKTFSHSVSNGQYGENLASSYNSREGYVFTGDAATQNWYDEI 247
WD LA AQ YA + HS +G YGENLA+++ A + W DE
Sbjct: 48 WDNRLAAYAQNYANQRIGDCGMIHS--HGPYGENLAAAFPQ-----LNAAGAVKMWVDEK 100
Query: 248 KDYKFGEESQINSKIGHFSQVVWKDTKTAGFGRAQSDNGNFVIVGQYKPAGNVIG 412
+ Y + S + GH++QVVW+++ G R +S+NG F I Y P GN IG
Sbjct: 101 RFYDYNSNSCVGGVCGHYTQVVWRNSVRLGCARVRSNNGWFFITCNYDPPGNFIG 155
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,911,308
Number of Sequences: 369166
Number of extensions: 1926802
Number of successful extensions: 6052
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5971
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)