Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K10
(594 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O97592|DMD_CANFA Dystrophin 33 0.54
sp|Q52ZX4|MATK_BANCU Maturase K (Intron maturase) 32 1.6
sp|P58002|IF2_LACLA Translation initiation factor IF-2 32 1.6
sp|O82702|VATG1_TOBAC Vacuolar ATP synthase subunit G 1 (V-... 31 2.0
sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein mutS 30 3.5
sp|Q12680|GLT1_YEAST Glutamate synthase [NADPH] precursor (... 30 4.6
sp|P11531|DMD_MOUSE Dystrophin 30 4.6
sp|Q23223|YH2O_CAEEL Putative helicase W08D2.7 30 6.0
sp|P34244|KKK1_YEAST Probable serine/threonine-protein kina... 29 7.8
sp|P41158|ELK4_MOUSE ETS domain protein Elk-4 (Serum respon... 29 7.8
>sp|O97592|DMD_CANFA Dystrophin
Length = 3680
Score = 33.1 bits (74), Expect = 0.54
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 9/115 (7%)
Frame = +2
Query: 104 MASLKKVEVTPELTTALHKPKATAEKIVKIERNVEVNARHAKTADIKEA-----EDLYDK 268
+++L+K+ V L T L K K T +K+ + +++ ++ A EA +D
Sbjct: 598 LSNLQKLAV---LKTDLEKKKQTMDKLCSLNQDLLSALKNTVVAHKMEAWLDNFAQRWDN 654
Query: 269 VAANL-KSKGNIS---TGRRPVMTQGDSRMPPQPVAARSNVEYEHTESDDMPPPP 421
+ L KS IS T +P +TQ V R ++ +H + + PPPP
Sbjct: 655 LVQKLEKSSAQISQAVTTTQPSLTQTTVMETVTMVTTREHILVKHAQEELPPPPP 709
>sp|Q52ZX4|MATK_BANCU Maturase K (Intron maturase)
Length = 509
Score = 31.6 bits (70), Expect = 1.6
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = -2
Query: 488 LNRKSVLKKCFDSSIHKIKFRLTVVEAYHRFPYAH---IPHSI*PPLVVEAFSNHLVSSP 318
L K ++K C SIH I L + + Y IPH I P ++V+AF + P
Sbjct: 119 LEGKELVKSCNLRSIHSIFSFLE--DKFSHLNYVSDILIPHPIHPEILVQAFRVWVQDVP 176
Query: 317 VFFLLKYSLY 288
LL++ LY
Sbjct: 177 SLHLLRFFLY 186
>sp|P58002|IF2_LACLA Translation initiation factor IF-2
Length = 944
Score = 31.6 bits (70), Expect = 1.6
Identities = 25/101 (24%), Positives = 37/101 (36%)
Frame = +2
Query: 98 KKMASLKKVEVTPELTTALHKPKATAEKIVKIERNVEVNARHAKTADIKEAEDLYDKVAA 277
K + K EV PE +P T EK + + + + IK AED+ + AA
Sbjct: 156 KDNTATSKAEVKPENVADKKEPVVTEEKKKSLTQKPRIQIKV-----IKRAEDIKKEQAA 210
Query: 278 NLKSKGNISTGRRPVMTQGDSRMPPQPVAARSNVEYEHTES 400
K R + D+R P Q + Y+ S
Sbjct: 211 ARPEKKKFDKNRNDRNNRSDNRRPNQNGNGQGGNHYDKNRS 251
>sp|O82702|VATG1_TOBAC Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar
proton pump G subunit 1)
Length = 110
Score = 31.2 bits (69), Expect = 2.0
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +2
Query: 212 NARHAKTADIKEAEDLYDKVAANLKSKGNISTGRRPVMTQGDSRMPPQPVAARSNVEYEH 391
NAR AK A +K+A++ +K A ++ R+ T GDS + + ++ + EH
Sbjct: 26 NARTAKQARLKQAKEEAEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEH 85
Query: 392 --TESDDMPP 415
TE++ + P
Sbjct: 86 LKTEAERVSP 95
>sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein mutS
Length = 881
Score = 30.4 bits (67), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Frame = +2
Query: 83 PENPYKKMASLKKVE--VTPELTTALHKPKATAEKIVKIERNVEVNARHAKTADIKEAED 256
PE Y + +L E +TPEL K EK++ +E V V+ R++ DI
Sbjct: 481 PEGRYVRKQTLSNCERYITPELKEMEDKILGAEEKLISLEYEVFVSIRNSIEKDIDRM-- 538
Query: 257 LYDKVAANL 283
K++AN+
Sbjct: 539 ---KISANI 544
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADPH] precursor (NADPH-GOGAT)
Length = 2144
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 14 QSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKI 193
QS + + N+Y +D + P + YKK+ +K E A K KAT+E + K
Sbjct: 1523 QSDLAARILGNFNHYLKDFVKVIPTD-YKKVLLKEKAEA------AKAKAKATSEYLKKF 1575
Query: 194 ERNVEVN 214
N EV+
Sbjct: 1576 RSNQEVD 1582
>sp|P11531|DMD_MOUSE Dystrophin
Length = 3678
Score = 30.0 bits (66), Expect = 4.6
Identities = 29/115 (25%), Positives = 46/115 (40%), Gaps = 9/115 (7%)
Frame = +2
Query: 104 MASLKKVEVTPELTTALHKPKATAEKIVKIERNVEVNARHAKTADIKEA-----EDLYDK 268
M+SL K+ L L K K T EK+ + +++ ++ E +D
Sbjct: 599 MSSLHKIST---LKIDLEKKKPTMEKLSSLNQDLLSALKNKSVTQKMEIWMENFAQRWDN 655
Query: 269 VAANL-KSKGNIS---TGRRPVMTQGDSRMPPQPVAARSNVEYEHTESDDMPPPP 421
+ L KS IS T +P +TQ V R + +H + + PPPP
Sbjct: 656 LTQKLEKSSAQISQAVTTTQPSLTQTTVMETVTMVTTREQIMVKHAQEELPPPPP 710
>sp|Q23223|YH2O_CAEEL Putative helicase W08D2.7
Length = 1026
Score = 29.6 bits (65), Expect = 6.0
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 47 INNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKIVKIERNVEVNARHA 226
+ N D++ APENP +K+ S KK + ++T L A V + E ++ A
Sbjct: 13 VKNEIMDVEE-APENPMEKLDSAKKRQAREDMTNLL----ANMHNDVGVGNFDEATSKRA 67
Query: 227 KTADIKEAED 256
+ + +E E+
Sbjct: 68 RVEEEEEVEE 77
>sp|P34244|KKK1_YEAST Probable serine/threonine-protein kinase YKL101W
Length = 1518
Score = 29.3 bits (64), Expect = 7.8
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Frame = +2
Query: 5 LGQQSSECVLTVNSINNYAQDLKHIAPENPYKKMASLKKVEVTPELTTALHKPKATAEKI 184
+ ++SS+ VL V A + EN Y K+ ++VT + + T + I
Sbjct: 1324 ISEESSQLVLPVVEKKENANNT-----ENNYSKIPKPSTIKVTKDTAMESNTQTHTKKPI 1378
Query: 185 VKIERNVEVNARHAKTADIKEAEDLYDKVAANLKSKGNISTGRRPVMTQ---GDSRMPPQ 355
+K +NVEV + A + ++ + K+ N S N + + +T D+ M
Sbjct: 1379 LKSVQNVEV-----EEAPSSDKKNWFVKLFQNFSSHNNATKASKNHVTNISFDDAHMLTL 1433
Query: 356 PVAARSNVEYE 388
+++++Y+
Sbjct: 1434 NEFNKNSIDYQ 1444
>sp|P41158|ELK4_MOUSE ETS domain protein Elk-4 (Serum response factor accessory protein
1) (SAP-1)
Length = 430
Score = 29.3 bits (64), Expect = 7.8
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +2
Query: 35 TVNSINNYAQDL-KHIAPENPYKKMASLKKVEVTPE----LTTALHKP 163
T+NS+N + L K I ENP +K+A K E TP +TT KP
Sbjct: 150 TLNSLNTSNKKLFKSIKIENPAEKLAEKKAQEPTPSVIKFVTTPAKKP 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,168,049
Number of Sequences: 369166
Number of extensions: 1156541
Number of successful extensions: 3650
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3642
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)