Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_K09
(704 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09287|YQK3_CAEEL Hypothetical protein C56G2.3 in chromo... 60 4e-09
sp|Q12400|TRM10_YEAST tRNA (guanine-N(1)-)-methyltransferas... 55 2e-07
sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 (Protein ki... 32 2.1
sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase-2 (PARP-... 31 3.7
sp|Q10297|IMB5_SCHPO Importin beta-5 subunit (Karyopherin b... 31 3.7
sp|O07104|MRAW_ENTFA S-adenosyl-methyltransferase mraW 31 3.7
sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 (NPY2-... 30 4.8
sp|Q8ZT61|THII_PYRAE Probable thiamine biosynthesis protein... 30 6.2
>sp|Q09287|YQK3_CAEEL Hypothetical protein C56G2.3 in chromosome III
Length = 318
Score = 60.5 bits (145), Expect = 4e-09
Identities = 49/207 (23%), Positives = 85/207 (41%), Gaps = 3/207 (1%)
Frame = +3
Query: 33 KASTNLIKQRVFEAIILKSQEIVFDFSFENDMTRREILESAKQFKECYGLNRKLREPFQI 212
K N+ ++F A+ + I D + +M +R+ E Q + N + PF +
Sbjct: 80 KRVNNIEGSKIFAAMNSGAPRIALDIQYVEEMNKRDSGELGNQMQYTISENFSAKSPFVL 139
Query: 213 GVINCKRGSLTHCDLSKSL--LTSQFSTYRSIEDLPFVFHEKHLIETY-PNKKIIYLSPN 383
+N LSKS+ T + + D F K + E Y + IY+S N
Sbjct: 140 DFVNSPSKEFLEQWLSKSVGYYTGNYINQTILPD----FSTKGIKEFYGKSANTIYISSN 195
Query: 384 SSNAFEEGEYDHDAIYIISAIVEKHVKLPLSLVKAEKEGMEHRSFPLDRHVKWASGSKNL 563
+ + + G D I I + K +L A + + P+ R+VKW SG + L
Sbjct: 196 ARDVLD-GPLTADVIGICVTMGRKRE----ALSAARRANIRAYRLPIHRYVKWKSGPQYL 250
Query: 564 PLYQVFSIMSIARETNGDWCRAIRQSL 644
P + +++ GDW RA+ ++
Sbjct: 251 PFPNIMNVLREVYMNGGDWSRALHNNI 277
>sp|Q12400|TRM10_YEAST tRNA (guanine-N(1)-)-methyltransferase TRM10 (tRNA
methyltransferase 10)
Length = 293
Score = 54.7 bits (130), Expect = 2e-07
Identities = 47/195 (24%), Positives = 90/195 (46%), Gaps = 1/195 (0%)
Frame = +3
Query: 93 EIVFDFSFENDMTRREILESAKQFKECYGLNRKLREPFQIGVINCKRGSLTHCDLS-KSL 269
EI+ D SF+ M +EI+ + Q Y NR+ +I V + + + K+
Sbjct: 96 EIILDCSFDELMNDKEIVSLSNQVTRAYSANRRANHFAEIKVAPFDKRLKQRFETTLKNT 155
Query: 270 LTSQFSTYRSIEDLPFVFHEKHLIETYPNKKIIYLSPNSSNAFEEGEYDHDAIYIISAIV 449
++ ++ + D +F ++H+ + KI+YL+ ++ E+ E YI+ IV
Sbjct: 156 NYENWNHFKFLPDDKIMFGDEHISKD----KIVYLTADTEEKLEKLE--PGMRYIVGGIV 209
Query: 450 EKHVKLPLSLVKAEKEGMEHRSFPLDRHVKWASGSKNLPLYQVFSIMSIARETNGDWCRA 629
+K+ L L KA+K G+ R P+D ++ G + L V +M + + +W A
Sbjct: 210 DKNRYKELCLKKAQKMGIPTRRLPIDEYIN-LEGRRVLTTTHVVQLM-LKYFDDHNWKNA 267
Query: 630 IRQSLPLKILHPKSQ 674
LP + L +++
Sbjct: 268 FESVLPPRKLDAEAK 282
>sp|Q99996|AKAP9_HUMAN A-kinase anchor protein 9 (Protein kinase A anchoring protein 9)
(PRKA9) (A-kinase anchor protein 450 kDa) (AKAP 450)
(A-kinase anchor protein 350 kDa) (AKAP 350) (hgAKAP
350) (AKAP 120-like protein) (Hyperion protein) (Yotiao
protein) (Centrosome- and Golgi-localized PKN-associated
protein) (CG-NAP)
Length = 3911
Score = 31.6 bits (70), Expect = 2.1
Identities = 26/99 (26%), Positives = 43/99 (43%)
Frame = +3
Query: 66 FEAIILKSQEIVFDFSFENDMTRREILESAKQFKECYGLNRKLREPFQIGVINCKRGSLT 245
FEA I + I+ + RRE E+ ++F E ++KL+ FQ + + T
Sbjct: 208 FEAAIKQRDGIITQLTANLQQARREKDETMREFLELTEQSQKLQIQFQQLQASETLRNST 267
Query: 246 HCDLSKSLLTSQFSTYRSIEDLPFVFHEKHLIETYPNKK 362
H + LL ++ + L + HL+E Y KK
Sbjct: 268 HSSTAADLLQAKQQILTHQQQLE---EQDHLLEDYQKKK 303
>sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase-2 (PARP-2) (NAD(+)
ADP-ribosyltransferase-2) (Poly[ADP-ribose]
synthetase-2) (pADPRT-2) (mPARP-2)
Length = 559
Score = 30.8 bits (68), Expect = 3.7
Identities = 14/40 (35%), Positives = 28/40 (70%)
Frame = +3
Query: 420 DAIYIISAIVEKHVKLPLSLVKAEKEGMEHRSFPLDRHVK 539
D + ++ A+ + +++ L LVK+E++G+EH PLD+H +
Sbjct: 305 DKVKLLEALGD--IEIALKLVKSERQGLEH---PLDQHYR 339
>sp|Q10297|IMB5_SCHPO Importin beta-5 subunit (Karyopherin beta-5 subunit) (114 kDa
karyopherin)
Length = 986
Score = 30.8 bits (68), Expect = 3.7
Identities = 26/109 (23%), Positives = 48/109 (44%)
Frame = +3
Query: 330 KHLIETYPNKKIIYLSPNSSNAFEEGEYDHDAIYIISAIVEKHVKLPLSLVKAEKEGMEH 509
KH IE Y + Y++ S F AI ++SA E+H LP+ E
Sbjct: 368 KHQIEVYESDVSEYIANEFSMDFASDTVRGAAISVLSAF-EEHTTLPIQQSLREMSA--- 423
Query: 510 RSFPLDRHVKWASGSKNLPLYQVFSIMSIARETNGDWCRAIRQSLPLKI 656
++ L+ + W + LY S+ + + +T D+ I +++ ++I
Sbjct: 424 -TYILNNEINWI--YQEALLYACCSVDAASDDTYDDYLDPIYEAIKVRI 469
>sp|O07104|MRAW_ENTFA S-adenosyl-methyltransferase mraW
Length = 318
Score = 30.8 bits (68), Expect = 3.7
Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +3
Query: 219 INCKRGSLTHCDLSKSLLTSQFSTYRSIEDLPFVFHEKHLIETYPNK-KIIYLSPNSSNA 395
++C G H + + L Y +D + H K ++ Y +K ++ ++ N N
Sbjct: 28 VDCTLGGAGHSEYLLTQLNEHGHLYAFDQDQKALAHAKTRLQKYVDKGQVTFIKSNFRNI 87
Query: 396 FEEGEYDHDAIYIISAIVEKHVKLPLSLVKAEKEGMEHRSFPLD 527
EE +H ++ + + V P L +AE+ H+ PLD
Sbjct: 88 KEE-LAEHGVFHVDGILYDLGVSSP-QLDEAERGFSYHQDAPLD 129
>sp|Q9DDN6|NPY2R_CHICK Neuropeptide Y receptor type 2 (NPY2-R) (NPY-Y2 receptor)
Length = 385
Score = 30.4 bits (67), Expect = 4.8
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = +3
Query: 318 VFHEKHLIETYPNKKIIYLSPNSSNAFEEGEYDHDAIYIISAIVEKHVKLPLSLV 482
+F E LIE P+ KI+ S EG+ ++ IY +S ++ ++V LPL+++
Sbjct: 189 IFREYSLIEIIPDFKIVVCSEKWPG---EGQLNYGTIYSVSMLLIQYV-LPLAII 239
>sp|Q8ZT61|THII_PYRAE Probable thiamine biosynthesis protein thiI
Length = 484
Score = 30.0 bits (66), Expect = 6.2
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Frame = +3
Query: 69 EAIILKSQEIVFDFSFENDMTRREILESAKQFKECYGLNRKLREPFQI---GVINCKRGS 239
E +I++ E+ R +L +A++ E G R +EP +I G +NC + +
Sbjct: 2 EVVIIRVGELTVKRGLTRAEMERLLLRAAREAAEECGGARFEKEPGRIYAYGDVNCLKKA 61
Query: 240 LTHCDLSKSLLTSQFSTYRSIEDL 311
L+ KS+ ++ TY+ I D+
Sbjct: 62 LSKVFGVKSVSPARVITYQKITDI 85
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,329,730
Number of Sequences: 369166
Number of extensions: 1488433
Number of successful extensions: 3526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3524
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6170718545
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)