Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_J24
(284 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BSF4|PISD_MOUSE Phosphatidylserine decarboxylase proen... 64 1e-10
sp|P27465|PISD_CRIGR Phosphatidylserine decarboxylase proen... 64 1e-10
sp|Q9UG56|PISD_HUMAN Phosphatidylserine decarboxylase proen... 64 1e-10
sp|Q5R8I8|PISD_PONPY Phosphatidylserine decarboxylase proen... 64 1e-10
sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proen... 53 2e-07
sp|Q10949|PISD_CAEEL Putative phosphatidylserine decarboxyl... 43 2e-04
sp|Q6F6W3|PSD_ACIAD Phosphatidylserine decarboxylase proenz... 37 0.014
sp|P53888|YNR0_YEAST Hypothetical 14.7 kDa protein in RPS3-... 36 0.024
sp|O25911|PSD_HELPY Phosphatidylserine decarboxylase proenz... 35 0.041
sp|Q9ZJN0|PSD_HELPJ Phosphatidylserine decarboxylase proenz... 35 0.070
>sp|Q8BSF4|PISD_MOUSE Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 406
Score = 63.9 bits (154), Expect = 1e-10
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +1
Query: 4 GIPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
GIP+ KG+ GEFN GSTIVLIFEAP DF F ++ ++FGEALG
Sbjct: 359 GIPMRKGEPLGEFNLGSTIVLIFEAPKDFNFRLKAGQKIRFGEALG 404
>sp|P27465|PISD_CRIGR Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 409
Score = 63.9 bits (154), Expect = 1e-10
Identities = 29/46 (63%), Positives = 35/46 (76%)
Frame = +1
Query: 4 GIPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
GIP+ KG+ GEFN GSTIVLIFEAP DF F ++ ++FGEALG
Sbjct: 362 GIPMRKGEHLGEFNLGSTIVLIFEAPKDFNFRLKAGQKIRFGEALG 407
>sp|Q9UG56|PISD_HUMAN Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 408
Score = 63.5 bits (153), Expect = 1e-10
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +1
Query: 4 GIPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
G+P+ KG+ GEFN GSTIVLIFEAP DF F ++ ++FGEALG
Sbjct: 361 GVPMRKGEHLGEFNLGSTIVLIFEAPKDFNFQLKTGQKIRFGEALG 406
>sp|Q5R8I8|PISD_PONPY Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 409
Score = 63.5 bits (153), Expect = 1e-10
Identities = 28/46 (60%), Positives = 35/46 (76%)
Frame = +1
Query: 4 GIPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
G+P+ KG+ GEFN GSTIVLIFEAP DF F ++ ++FGEALG
Sbjct: 362 GVPMRKGEHLGEFNLGSTIVLIFEAPKDFNFQLKTGQKIRFGEALG 407
>sp|P39006|PSD1_YEAST Phosphatidylserine decarboxylase proenzyme 1, mitochondrial
precursor [Contains: Phosphatidylserine decarboxylase
beta chain; Phosphatidylserine decarboxylase alpha
chain]
Length = 500
Score = 53.1 bits (126), Expect = 2e-07
Identities = 24/46 (52%), Positives = 31/46 (67%)
Frame = +1
Query: 4 GIPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
G+P+ KG+ G F GST+VL FEAP +F+F V V VK G+ LG
Sbjct: 447 GMPLVKGEEMGGFELGSTVVLCFEAPTEFKFDVRVGDKVKMGQKLG 492
>sp|Q10949|PISD_CAEEL Putative phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 377
Score = 43.1 bits (100), Expect = 2e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 10 PIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEAL 138
P G+ GEF GSTIVL+F+AP +F ++ +++G++L
Sbjct: 330 PYVSGERVGEFRLGSTIVLVFQAPPTIKFAIKAGDPLRYGQSL 372
>sp|Q6F6W3|PSD_ACIAD Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 285
Score = 37.0 bits (84), Expect = 0.014
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +1
Query: 7 IPIEKGDLFGEFNFGSTIVLIFEAPA---DFQFGVEVNSIVKFGEALGR 144
+ ++KGD G F GST +++FE D QF + NSIV GE LG+
Sbjct: 235 VTLQKGDELGRFYLGSTAIILFEKDKMVWDQQF--KANSIVVMGEKLGQ 281
>sp|P53888|YNR0_YEAST Hypothetical 14.7 kDa protein in RPS3-PSD1 intergenic region
Length = 131
Score = 36.2 bits (82), Expect = 0.024
Identities = 20/46 (43%), Positives = 22/46 (47%)
Frame = -1
Query: 140 PRASPNFTIELTSTPNWKSAGASKIKTIVEPKLNSPNKSPFSIGIP 3
P P T+ T T N S GASK T V P P SP + GIP
Sbjct: 74 PNFCPILTLSPTLTSNLNSVGASKQSTTVLPNSKPPISSPLTKGIP 119
>sp|O25911|PSD_HELPY Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 267
Score = 35.4 bits (80), Expect = 0.041
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +1
Query: 7 IPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
I ++KGD G F GSTIVL + A F+ E N VKFGE++G
Sbjct: 221 IKVKKGDNLGNFEMGSTIVLFIQNTA-FKDLKEKN--VKFGESIG 262
>sp|Q9ZJN0|PSD_HELPJ Phosphatidylserine decarboxylase proenzyme [Contains:
Phosphatidylserine decarboxylase alpha chain;
Phosphatidylserine decarboxylase beta chain]
Length = 267
Score = 34.7 bits (78), Expect = 0.070
Identities = 20/45 (44%), Positives = 25/45 (55%)
Frame = +1
Query: 7 IPIEKGDLFGEFNFGSTIVLIFEAPADFQFGVEVNSIVKFGEALG 141
I ++KGD G F GSTIVL + A F VKFGE++G
Sbjct: 221 IKVKKGDNLGNFEMGSTIVLFIQNTA---FKDLKEKSVKFGESIG 262
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,333,126
Number of Sequences: 369166
Number of extensions: 470266
Number of successful extensions: 1159
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)