Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_J13
(597 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP ... 235 7e-62
sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86) 234 1e-61
sp|O61998|HSP90_BRUPA Heat shock protein 90 234 2e-61
sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86) 233 2e-61
sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86) 233 4e-61
sp|Q9GKX7|HS90A_HORSE Heat shock protein HSP 90-alpha (HSP 86) 233 4e-61
sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha 232 6e-61
sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 8... 231 1e-60
sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84) 231 1e-60
sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 8... 231 1e-60
>sp|P07901|HS90A_MOUSE Heat shock protein HSP 90-alpha (HSP 86) (Tumor specific
transplantation 86 kDa antigen) (TSTA)
Length = 733
Score = 235 bits (599), Expect = 7e-62
Identities = 117/161 (72%), Positives = 139/161 (86%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIMKAQALRD+STMGYMAA
Sbjct: 572 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAA 631
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 632 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 691
Query: 413 MIKLGLGIEVDDVEMDATEAG---DVPVVASTAEEDAGKME 526
MIKLGLGI+ DD +D T A ++P + ++D +ME
Sbjct: 692 MIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRME 730
>sp|P07900|HS90A_HUMAN Heat shock protein HSP 90-alpha (HSP 86)
Length = 732
Score = 234 bits (597), Expect = 1e-61
Identities = 117/161 (72%), Positives = 138/161 (85%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIMKAQALRD+STMGYMAA
Sbjct: 571 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAA 630
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 631 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 690
Query: 413 MIKLGLGIEVDDVEMDATEAG---DVPVVASTAEEDAGKME 526
MIKLGLGI+ DD D T A ++P + ++D +ME
Sbjct: 691 MIKLGLGIDEDDPTADDTSAAVTEEMPPL--EGDDDTSRME 729
>sp|O61998|HSP90_BRUPA Heat shock protein 90
Length = 717
Score = 234 bits (596), Expect = 2e-61
Identities = 122/163 (74%), Positives = 143/163 (87%), Gaps = 5/163 (3%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCKVMKDIL+KKVEKV VSNRLVSSPCCIVTS+YGWSANMERIMKAQALRDSSTMGYMAA
Sbjct: 553 LCKVMKDILEKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAA 612
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHS++K L+ RV+ADKNDK+VKDLV+LL+ET+LLSSGF+LEDPQ+H +RI+R
Sbjct: 613 KKHLEINPDHSVIKALRERVEADKNDKTVKDLVVLLFETALLSSGFSLEDPQLHASRIYR 672
Query: 413 MIKLGLGI-EVDDVEMDATEAGD----VPVVASTAEEDAGKME 526
MIKLGL I E ++ E A+ +G+ VP + AEEDA +ME
Sbjct: 673 MIKLGLDITEDEEEEAIASVSGEKDECVPNLVG-AEEDASRME 714
>sp|P46633|HS90A_CRIGR Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 233 bits (595), Expect = 2e-61
Identities = 116/161 (72%), Positives = 139/161 (86%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERI+KAQALRD+STMGYMAA
Sbjct: 572 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIIKAQALRDNSTMGYMAA 631
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 632 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 691
Query: 413 MIKLGLGIEVDDVEMDATEAG---DVPVVASTAEEDAGKME 526
MIKLGLGI+ DD +D T A ++P + ++D +ME
Sbjct: 692 MIKLGLGIDEDDPTVDDTSAAVTEEMPPL--EGDDDTSRME 730
>sp|O02705|HS90A_PIG Heat shock protein HSP 90-alpha (HSP 86)
Length = 733
Score = 233 bits (593), Expect = 4e-61
Identities = 116/161 (72%), Positives = 138/161 (85%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIMKAQALRD+STMGYMAA
Sbjct: 572 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAA 631
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 632 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 691
Query: 413 MIKLGLGIEVDDVEMDATEAG---DVPVVASTAEEDAGKME 526
MIKLGLGI+ DD D + A ++P + ++D +ME
Sbjct: 692 MIKLGLGIDEDDPTADDSSAAVTEEMPPL--EGDDDTSRME 730
>sp|Q9GKX7|HS90A_HORSE Heat shock protein HSP 90-alpha (HSP 86)
Length = 719
Score = 233 bits (593), Expect = 4e-61
Identities = 116/161 (72%), Positives = 138/161 (85%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIMKAQALRD+STMGYMAA
Sbjct: 561 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAA 620
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 621 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 680
Query: 413 MIKLGLGIEVDDVEMDATEAG---DVPVVASTAEEDAGKME 526
MIKLGLGI+ DD D + A ++P + ++D +ME
Sbjct: 681 MIKLGLGIDEDDPTADDSSAAVTEEMPPL--EGDDDTSRME 719
>sp|P11501|HS90A_CHICK Heat shock protein HSP 90-alpha
Length = 728
Score = 232 bits (591), Expect = 6e-61
Identities = 115/159 (72%), Positives = 136/159 (85%), Gaps = 1/159 (0%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MKDIL+KKVEKV VSNRLV+SPCCIVTS YGW+ANMERIMKAQALRD+STMGYMAA
Sbjct: 567 LCKIMKDILEKKVEKVVVSNRLVTSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMAA 626
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDHSI++TL+ + +ADKNDKSVKDLV+LLYET+LLSSGF+LEDPQ H NRI+R
Sbjct: 627 KKHLEINPDHSIIETLRQKAEADKNDKSVKDLVILLYETALLSSGFSLEDPQTHANRIYR 686
Query: 413 MIKLGLGIEVDDVEM-DATEAGDVPVVASTAEEDAGKME 526
MIKLGLGI+ DD +A+ A + ++D +ME
Sbjct: 687 MIKLGLGIDEDDTAAEEASPAVTEEMPPLEGDDDTSRME 725
>sp|P08238|HS90B_HUMAN Heat shock protein HSP 90-beta (HSP 84) (HSP 90)
Length = 724
Score = 231 bits (589), Expect = 1e-60
Identities = 115/161 (71%), Positives = 139/161 (86%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MK+ILDKKVEKVT+SNRLVSSPCCIVTS YGW+ANMERIMKAQALRD+STMGYM A
Sbjct: 563 LCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMA 622
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDH I++TL+ + +ADKNDK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+R
Sbjct: 623 KKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYR 682
Query: 413 MIKLGLGIEVDDV---EMDATEAGDVPVVASTAEEDAGKME 526
MIKLGLGI+ D+V E +A ++P + +EDA +ME
Sbjct: 683 MIKLGLGIDEDEVAAEEPNAAVPDEIPPL--EGDEDASRME 721
>sp|Q9GKX8|HS90B_HORSE Heat shock protein HSP 90-beta (HSP 84)
Length = 724
Score = 231 bits (588), Expect = 1e-60
Identities = 115/161 (71%), Positives = 138/161 (85%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MK+ILDKKVEKVT+SNRLVSSPCCIVTS YGW+ANMERIMKAQALRD+STMGYM A
Sbjct: 563 LCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMA 622
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDH I++TL+ + +ADKNDK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+R
Sbjct: 623 KKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYR 682
Query: 413 MIKLGLGIEVDDV---EMDATEAGDVPVVASTAEEDAGKME 526
MIKLGLGI+ D+V E A ++P + +EDA +ME
Sbjct: 683 MIKLGLGIDEDEVAAEEPSAAVPDEIPPL--EGDEDASRME 721
>sp|P11499|HS90B_MOUSE Heat shock protein HSP 90-beta (HSP 84) (Tumor-specific
transplantation 84 kDa antigen) (TSTA)
Length = 724
Score = 231 bits (588), Expect = 1e-60
Identities = 115/161 (71%), Positives = 138/161 (85%), Gaps = 3/161 (1%)
Frame = +2
Query: 53 LCKVMKDILDKKVEKVTVSNRLVSSPCCIVTSQYGWSANMERIMKAQALRDSSTMGYMAA 232
LCK+MK+ILDKKVEKVT+SNRLVSSPCCIVTS YGW+ANMERIMKAQALRD+STMGYM A
Sbjct: 563 LCKLMKEILDKKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMA 622
Query: 233 KKHLEINPDHSIMKTLKARVDADKNDKSVKDLVMLLYETSLLSSGFTLEDPQVHGNRIHR 412
KKHLEINPDH I++TL+ + +ADKNDK+VKDLV+LL+ET+LLSSGF+LEDPQ H NRI+R
Sbjct: 623 KKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLEDPQTHSNRIYR 682
Query: 413 MIKLGLGIEVDDV---EMDATEAGDVPVVASTAEEDAGKME 526
MIKLGLGI+ D+V E A ++P + +EDA +ME
Sbjct: 683 MIKLGLGIDEDEVTAEEPSAAVPDEIPPL--EGDEDASRME 721
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,078,567
Number of Sequences: 369166
Number of extensions: 959342
Number of successful extensions: 2714
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2664
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)