Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_I20
(879 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II 140 kDa... 411 e-114
sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II 140 kDa... 411 e-114
sp|P08266|RPB2_DROME DNA-directed RNA polymerase II 140 kDa... 409 e-114
sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II second ... 402 e-112
sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II 138 kDa... 343 4e-94
sp|Q42877|RPB2_LYCES DNA-directed RNA polymerase II 135 kDa... 333 4e-91
sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II 135 kDa... 333 5e-91
sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II polypep... 316 6e-86
sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II 140 kDa... 305 1e-82
sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II polypep... 301 2e-81
>sp|P30876|RPB2_HUMAN DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II
subunit 2) (RPB2)
Length = 1174
Score = 411 bits (1056), Expect = e-114
Identities = 195/294 (66%), Positives = 236/294 (80%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
++KE+++ +F+DR F I+ +I+DG++YSLATGNWGDQKKA + R GVSQVL
Sbjct: 411 LLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVL 470
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NRLT+ S LSH+RR NSP GRD KLAKPRQLHNT WGM+CPAETPEGHAVGLVKNLALM
Sbjct: 471 NRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA 530
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
Y+SVGS+ PI+EFLEEWSME+L EI+P AI +ATKI VNG WVGIH+DP+QL NTL+KL
Sbjct: 531 YISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKL 590
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDTDLRQ 720
RR MD+I SEVS++RD +EIRIY+DAGRICRPLLIVE QKL+++K HID LK+ +
Sbjct: 591 RRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-N 649
Query: 721 RIGWSNLVSEGLVEYLDTLEEETSMIAMVPSDISVNS-QYCKTYTHCEIHPSMI 879
W +LV+ G+VEY+DTLEEET M+AM P D+ YC TYTHCEIHPSMI
Sbjct: 650 NYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMI 703
>sp|Q8CFI7|RPB2_MOUSE DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II
subunit 2) (RPB2)
Length = 1174
Score = 411 bits (1056), Expect = e-114
Identities = 195/294 (66%), Positives = 236/294 (80%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
++KE+++ +F+DR F I+ +I+DG++YSLATGNWGDQKKA + R GVSQVL
Sbjct: 411 LLKEVRIYAQKFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDQKKAHQARAGVSQVL 470
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NRLT+ S LSH+RR NSP GRD KLAKPRQLHNT WGM+CPAETPEGHAVGLVKNLALM
Sbjct: 471 NRLTFASTLSHLRRLNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMA 530
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
Y+SVGS+ PI+EFLEEWSME+L EI+P AI +ATKI VNG WVGIH+DP+QL NTL+KL
Sbjct: 531 YISVGSQPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKL 590
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDTDLRQ 720
RR MD+I SEVS++RD +EIRIY+DAGRICRPLLIVE QKL+++K HID LK+ +
Sbjct: 591 RRQMDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY-N 649
Query: 721 RIGWSNLVSEGLVEYLDTLEEETSMIAMVPSDISVNS-QYCKTYTHCEIHPSMI 879
W +LV+ G+VEY+DTLEEET M+AM P D+ YC TYTHCEIHPSMI
Sbjct: 650 NYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMI 703
>sp|P08266|RPB2_DROME DNA-directed RNA polymerase II 140 kDa polypeptide (RNA polymerase II
subunit 2)
Length = 1176
Score = 409 bits (1050), Expect = e-114
Identities = 197/295 (66%), Positives = 237/295 (80%), Gaps = 2/295 (0%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
++KE++M T +F+DR F I+ N+ITDG+RYSLATGNWGDQKKA + R GVSQVL
Sbjct: 412 LMKEVRMYTQKFIDRGKDFNLELAIKTNIITDGLRYSLATGNWGDQKKAHQARAGVSQVL 471
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NRLT+ S LSH+RR NSP GRD KLAKPRQLHNT WGM+CPAETPEG AVGLVKNLALM
Sbjct: 472 NRLTFASTLSHLRRVNSPIGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMA 531
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
Y+SVGS+ PI+EFLEEWSME+L EIAP AI +ATKI VNG WVGIHRDP+QL TL+KL
Sbjct: 532 YISVGSQPSPILEFLEEWSMENLEEIAPSAIADATKIFVNGCWVGIHRDPEQLMATLRKL 591
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDTDLRQ 720
RR MD+I SEVS++RD ++EIRIY+DAGRICRPLLIVE+ L+++K H+++LK+ D
Sbjct: 592 RRQMDIIVSEVSMIRDIRDREIRIYTDAGRICRPLLIVENGSLLLKKTHVEMLKERDY-N 650
Query: 721 RIGWSNLVSEGLVEYLDTLEEETSMIAMVPSDISVNSQ--YCKTYTHCEIHPSMI 879
W LV+ G+VEY+DTLEEET MIAM P D+ + YC TYTHCEIHP+MI
Sbjct: 651 NYSWQVLVASGVVEYIDTLEEETVMIAMSPYDLKQDKDYAYCTTYTHCEIHPAMI 705
>sp|Q10578|RPB2_CAEEL DNA-directed RNA polymerase II second largest subunit (RNA polymerase
I subunit 2)
Length = 1193
Score = 402 bits (1034), Expect = e-112
Identities = 191/294 (64%), Positives = 240/294 (81%), Gaps = 1/294 (0%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
++KE++M +++++N F ++ + IT G+ YSLATGNWGDQKKA ++R GVSQVL
Sbjct: 417 LLKEMRMTAQKYINKNDDFALDVCVKTSTITRGLTYSLATGNWGDQKKAHQSRAGVSQVL 476
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NRLTY + LSH+RR NSP GR+ KLAKPRQLHNTQWGM+CPAETPEG AVGLVKNLALM
Sbjct: 477 NRLTYTATLSHLRRANSPIGREGKLAKPRQLHNTQWGMVCPAETPEGQAVGLVKNLALMA 536
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
Y+SVGS +PI+EFLEEWSME+L E++P AI +ATKI VNG+WVGIHR+PDQL TLKKL
Sbjct: 537 YISVGSLPEPILEFLEEWSMENLEEVSPSAIADATKIFVNGAWVGIHREPDQLMTTLKKL 596
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKD-TDLR 717
RR MD+I SEVS+VRD ++EIRIY+DAGR+CRPLLIVE+QKL ++K HID LK+ D
Sbjct: 597 RRQMDIIVSEVSMVRDIRDREIRIYTDAGRVCRPLLIVENQKLALKKRHIDQLKEAADEA 656
Query: 718 QRIGWSNLVSEGLVEYLDTLEEETSMIAMVPSDISVNSQYCKTYTHCEIHPSMI 879
+ WS+LV G+VE +D++EEETSMIAM+P D+ + YC T+THCEIHP+MI
Sbjct: 657 NKYTWSDLVGGGVVELIDSMEEETSMIAMMPEDLR-SGGYCDTHTHCEIHPAMI 709
>sp|Q02061|RPB2_SCHPO DNA-directed RNA polymerase II 138 kDa polypeptide (RNA polymerase II
subunit 2)
Length = 1210
Score = 343 bits (880), Expect = 4e-94
Identities = 177/329 (53%), Positives = 222/329 (67%), Gaps = 36/329 (10%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
M +++ + ++ N F + ++ N+IT+G+RYSLATGNWGDQK++ R GVSQVL
Sbjct: 410 MTRDVYKYMQKCVETNREFNLTLAVKSNIITNGLRYSLATGNWGDQKRSMVNRVGVSQVL 469
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NR T+ S LSH+RRTN+P GRD KLAKPRQLHNT WGM+CPAETPEG A GLVKNL+LM+
Sbjct: 470 NRYTFASTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGMVCPAETPEGQACGLVKNLSLMS 529
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
YVSVGS S PIIEFLEEW +E+L + P A NATK+ VNG W+G+HRDP L TL+ L
Sbjct: 530 YVSVGSPSAPIIEFLEEWGLETLEDYNPSASPNATKVFVNGVWLGVHRDPAHLTETLRSL 589
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQ-------KLVIRKDHIDLL 699
RR +D I++EVSIVRD KE+R+++DAGRICRPL IV++ +L IRK+HI L
Sbjct: 590 RRRLD-ISAEVSIVRDIREKELRLFTDAGRICRPLFIVDNNPNSERRGELCIRKEHIQQL 648
Query: 700 ------KDTDLRQRIGWSNLVSEGLVEYLDTLEEETSMIAMVPSDISVNSQ--------- 834
D D QR GW+ LVS GL+EYLD EEET MIAM P D+ + Q
Sbjct: 649 IEDKDRYDIDPEQRFGWTALVSSGLIEYLDAEEEETVMIAMSPEDLEASRQMQAGYEVKE 708
Query: 835 --------------YCKTYTHCEIHPSMI 879
+ +THCEIHP+MI
Sbjct: 709 ELDPAQRVKPAPNPHVHAWTHCEIHPAMI 737
>sp|Q42877|RPB2_LYCES DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase II
subunit 2)
Length = 1191
Score = 333 bits (854), Expect = 4e-91
Identities = 169/285 (59%), Positives = 209/285 (73%), Gaps = 5/285 (1%)
Frame = +1
Query: 40 DRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVLNRLTYVSALSHMR 219
D N++F I+ IT G++YSLATGNWG Q A+ TR GVSQVLNRLTY S LSH+R
Sbjct: 432 DVNLQFA----IKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVLNRLTYASTLSHLR 486
Query: 220 RTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMTYVSVGSKSDPIIE 399
R NSP GR+ KLAKPRQLHN+QWGM+CPAETPEG A GLVKNLALM Y++VGS + PI+E
Sbjct: 487 RLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILE 546
Query: 400 FLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKLRRSMDVIASEVSI 579
FLEEW E+ EI+P I ATKI VNG+WVGIHRDPD L TL++LRR +DV +EV +
Sbjct: 547 FLEEWGTENFEEISPAVIPQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDV-NTEVGV 605
Query: 580 VRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDTDLRQRIGWSNLVSEGLV 759
VRD KE+RIY+D GR RPL IVE Q+L+I+K I L+ + GW +LV++G +
Sbjct: 606 VRDIRLKELRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRESPDEGGWHDLVAKGYI 665
Query: 760 EYLDTLEEETSMIAMVPSD-----ISVNSQYCKTYTHCEIHPSMI 879
EY+DT EEET+MI+M +D ++ Y TYTHCEIHPS+I
Sbjct: 666 EYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSLI 710
>sp|P38420|RPB2_ARATH DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase II
subunit 2)
Length = 1188
Score = 333 bits (853), Expect = 5e-91
Identities = 166/298 (55%), Positives = 212/298 (71%), Gaps = 5/298 (1%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGVSQVL 180
+ ++++ + +D I+ IT G++YSLATGNWG Q A+ TR GVSQVL
Sbjct: 416 LTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWG-QANAAGTRAGVSQVL 474
Query: 181 NRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNLALMT 360
NRLTY S LSH+RR NSP GR+ KLAKPRQLHN+QWGM+CPAETPEG A GLVKNLALM
Sbjct: 475 NRLTYASTLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMV 534
Query: 361 YVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNTLKKL 540
Y++VGS + PI+EFLEEW E+ EI+P I ATKI VNG WVG+HRDPD L TL++L
Sbjct: 535 YITVGSAAYPILEFLEEWGTENFEEISPSVIPQATKIFVNGMWVGVHRDPDMLVKTLRRL 594
Query: 541 RRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDTDLRQ 720
RR +DV +EV +VRD KE+RIY+D GR RPL IV++QKL+I+K I L+ + +
Sbjct: 595 RRRVDV-NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDNQKLLIKKRDIYALQQRESAE 653
Query: 721 RIGWSNLVSEGLVEYLDTLEEETSMIAMVPSD-----ISVNSQYCKTYTHCEIHPSMI 879
GW +LV++G +EY+DT EEET+MI+M SD + Y + YTHCEIHPS+I
Sbjct: 654 EDGWHHLVAKGFIEYIDTEEEETTMISMTISDLVQARLRPEEAYTENYTHCEIHPSLI 711
>sp|Q8SR75|RPB2_ENCCU DNA-directed RNA polymerase II polypeptide 2 (RNA polymerase II
subunit 2)
Length = 1141
Score = 316 bits (809), Expect = 6e-86
Identities = 168/301 (55%), Positives = 211/301 (70%), Gaps = 8/301 (2%)
Frame = +1
Query: 1 MIKELKMNTARFLDR----NMRFTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGV 168
+ K+L ++T R + + F + ++ ++IT G RY+LATGNWGDQ KA +TR GV
Sbjct: 379 LFKKLCVDTTRHMQKCIENGREFNIALGLKASIITQGFRYALATGNWGDQAKAMQTRAGV 438
Query: 169 SQVLNRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNL 348
+QVLNR +VS LSH+RR N+P ++ KLA PRQLHNT WGM+CPAETPEG A GLVKNL
Sbjct: 439 AQVLNRYNFVSTLSHLRRVNTPIEKEGKLAAPRQLHNTHWGMVCPAETPEGQACGLVKNL 498
Query: 349 ALMTYVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNT 528
+LM Y+SVGS S P++EFLEE +ESL EI+ + ATKI VNG WVGIH DP L +
Sbjct: 499 SLMAYISVGSSSGPLVEFLEECGVESLEEISTSQLDAATKIFVNGVWVGIHSDPVGLIKS 558
Query: 529 LKKLRRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVEDQKLVIRKDHIDLLKDT 708
LK LRRS++ + EVSIVRD KEIR+ SDAGR CRPLL+V+D KLVI + I LK
Sbjct: 559 LKLLRRSLE-MDKEVSIVRDIREKEIRVQSDAGRPCRPLLVVKDNKLVITAEDIRKLK-- 615
Query: 709 DLRQRIGWSNLVSEGLVEYLDTLEEETSMIAM---VPSDISVN-SQYCKTYTHCEIHPSM 876
R I W NLV+ G +E+LD EEE SMIAM + +D S N S +YTHCEIHP++
Sbjct: 616 --RGEIKWDNLVTSGFIEFLDVEEEEMSMIAMNTKILADESRNSSDVSVSYTHCEIHPAL 673
Query: 877 I 879
I
Sbjct: 674 I 674
>sp|P08518|RPB2_YEAST DNA-directed RNA polymerase II 140 kDa polypeptide (B150) (RNA
polymerase II subunit 2)
Length = 1224
Score = 305 bits (780), Expect = 1e-82
Identities = 163/330 (49%), Positives = 211/330 (63%), Gaps = 37/330 (11%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMR----FTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGV 168
+ K+L + R++ R + F I IT G++Y+LATGNWG+QKKA +R GV
Sbjct: 420 LFKKLTKDIFRYMQRTVEEAHDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 479
Query: 169 SQVLNRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNL 348
SQVLNR TY S LSH+RRTN+P GRD KLAKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 480 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 539
Query: 349 ALMTYVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNT 528
+LM+ +SVG+ PII FL EW ME L + P +AT++ VNG W G+HR+P +L T
Sbjct: 540 SLMSCISVGTDPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 599
Query: 529 LKKLRRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVED------QKLVIRKDHI 690
L+ LRR D I EVS++RD KE++I++DAGR+ RPL IVED ++L +RK HI
Sbjct: 600 LRTLRRKGD-INPEVSMIRDIREKELKIFTDAGRVYRPLFIVEDDESLGHKELKVRKGHI 658
Query: 691 DLLKDTDLRQRIG---------WSNLVSEGLVEYLDTLEEETSMIAMVPSDISVN----- 828
L T+ + G WS+L++EGLVEY+D EEE+ +IAM P D+
Sbjct: 659 AKLMATEYQDIEGGFEDVEEYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPAEANEE 718
Query: 829 -------------SQYCKTYTHCEIHPSMI 879
S + T+THCEIHPSMI
Sbjct: 719 NDLDVDPAKRIRVSHHATTFTHCEIHPSMI 748
>sp|Q6FLD5|RPB2_CANGA DNA-directed RNA polymerase II polypeptide 2 (RNA polymerase II
subunit 2)
Length = 1223
Score = 301 bits (770), Expect = 2e-81
Identities = 159/331 (48%), Positives = 211/331 (63%), Gaps = 38/331 (11%)
Frame = +1
Query: 1 MIKELKMNTARFLDRNMR----FTASNTIRPNVITDGMRYSLATGNWGDQKKASETRKGV 168
+ ++L + R++ R + F I IT G++Y+LATGNWG+QKKA +R GV
Sbjct: 418 LFRKLTKDIFRYMQRTVEEANDFNMKLAINAKTITSGLKYALATGNWGEQKKAMSSRAGV 477
Query: 169 SQVLNRLTYVSALSHMRRTNSPTGRDSKLAKPRQLHNTQWGMICPAETPEGHAVGLVKNL 348
SQVLNR TY S LSH+RRTN+P GRD KLAKPRQLHNT WG++CPAETPEG A GLVKNL
Sbjct: 478 SQVLNRYTYSSTLSHLRRTNTPIGRDGKLAKPRQLHNTHWGLVCPAETPEGQACGLVKNL 537
Query: 349 ALMTYVSVGSKSDPIIEFLEEWSMESLNEIAPCAIINATKILVNGSWVGIHRDPDQLYNT 528
+LM+ +SVG+ PII FL EW ME L + P +AT++ VNG W G+HR+P +L T
Sbjct: 538 SLMSCISVGADPMPIITFLSEWGMEPLEDYVPHQSPDATRVFVNGVWHGVHRNPARLMET 597
Query: 529 LKKLRRSMDVIASEVSIVRDYSNKEIRIYSDAGRICRPLLIVED------QKLVIRKDHI 690
L+ LRR D I EVS++RD +E++I++DAGR+ RPL IVED ++L +RK H+
Sbjct: 598 LRTLRRKGD-INPEVSMIRDIREQELKIFTDAGRVYRPLFIVEDDEELGRKELKVRKGHV 656
Query: 691 DLLKDTDLRQRIG---------WSNLVSEGLVEYLDTLEEETSMIAMVPSDISVN----- 828
L T+ + G WS+L++EGLVEY+D EEE+ +IAM P D+
Sbjct: 657 AKLMATEYQDIEGGFEDAEDYTWSSLLNEGLVEYIDAEEEESILIAMQPEDLEPTAVEQD 716
Query: 829 --------------SQYCKTYTHCEIHPSMI 879
+ + T+THCEIHPSMI
Sbjct: 717 IPKENVDLAKRIKVTHHATTFTHCEIHPSMI 747
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,984,362
Number of Sequences: 369166
Number of extensions: 1711445
Number of successful extensions: 4527
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4456
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)