Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_I18
(797 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP... 379 e-105
sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cy... 374 e-103
sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cy... 373 e-103
sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP... 369 e-102
sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cy... 368 e-102
sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cy... 368 e-101
sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cyto... 367 e-101
sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cy... 365 e-101
sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mi... 360 2e-99
sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mi... 352 5e-97
>sp|P29190|PPCK_HAECO Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 619
Score = 379 bits (972), Expect = e-105
Identities = 178/262 (67%), Positives = 205/262 (78%)
Frame = +2
Query: 11 ILGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMR 190
I+G WM+P++L+ E+ R GCM GR+MY+IPFSMGP+G PLSKIG+QLTDSNYVVLSMR
Sbjct: 107 IMGHWMSPDSLATELDSRFPGCMAGRIMYVIPFSMGPVGGPLSKIGVQLTDSNYVVLSMR 166
Query: 191 VMTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXX 370
+MTRV VW LGD FV+C+HSVG PRP ++VINHWPCNPE+ LIAH P ER
Sbjct: 167 IMTRVGHEVWDALGDNDFVRCIHSVGLPRPVKQRVINHWPCNPERVLIAHRPAEREIWSF 226
Query: 371 XXXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKT 550
KK ALRIA IA DEGWMAEHMLIM VT P G+E +IAAAFPSACGKT
Sbjct: 227 GSGYGGNSLLGKKMLALRIASNIAKDEGWMAEHMLIMGVTRPDGKEHFIAAAFPSACGKT 286
Query: 551 NMAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTF 730
N+AMLEP+LPGWKV+ VGDDIAWM+F E G L AINPE GFFGVAPGT+ KTNP A+ TF
Sbjct: 287 NLAMLEPALPGWKVRCVGDDIAWMKFGEDGRLYAINPEYGFFGVAPGTSKKTNPMAVATF 346
Query: 731 QKNSIFTNVAETSDGSYYWEGL 796
QKNSIFTNV ET++G Y+WEGL
Sbjct: 347 QKNSIFTNVGETANGEYFWEGL 368
>sp|Q5R5J1|PPCKC_PONPY Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 374 bits (960), Expect = e-103
Identities = 174/261 (66%), Positives = 204/261 (78%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E + R GCM GR MY+IPFSMGP+GSPLSKIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKALNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRI 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ V LGD FVKC+HSVGCP P + ++N+WPCNPE TLIAHLPD R
Sbjct: 173 MTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALR+A R+A +EGW+AEHMLI+ +TNP+GE+KY+AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ PSLPGWKV+ VGDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT Q
Sbjct: 293 LAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQ 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|P35558|PPCKC_HUMAN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 373 bits (958), Expect = e-103
Identities = 174/261 (66%), Positives = 203/261 (77%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E R GCM GR MY+IPFSMGP+GSPLSKIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRI 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ V LGD FVKC+HSVGCP P + ++N+WPCNPE TLIAHLPD R
Sbjct: 173 MTRMGTPVLEALGDGEFVKCLHSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALR+A R+A +EGW+AEHMLI+ +TNP+GE+KY+AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPEGEKKYLAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ PSLPGWKV+ VGDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT Q
Sbjct: 293 LAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQ 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|Q05893|PPCK_ASCSU Phosphoenolpyruvate carboxykinase [GTP] (Phosphoenolpyruvate
carboxylase) (PEPCK)
Length = 643
Score = 369 bits (946), Expect = e-102
Identities = 173/264 (65%), Positives = 205/264 (77%), Gaps = 2/264 (0%)
Frame = +2
Query: 11 ILGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMR 190
++GQWM+P+ E+ R GCM GR MY+IP+SMGP+G PLSKIGI+LTDS+YVVL MR
Sbjct: 128 MMGQWMSPDEFGKELDDRFPGCMAGRTMYVIPYSMGPVGGPLSKIGIELTDSDYVVLCMR 187
Query: 191 VMTRVSPLVWHYLGDK--AFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXX 364
+MTR+ V L FV+CVHSVG P+P KVINHWPCNPEKT+IAH P ER
Sbjct: 188 IMTRMGEPVLKALAKNNGEFVRCVHSVGQPKPVATKVINHWPCNPEKTIIAHRPAEREIW 247
Query: 365 XXXXXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACG 544
KKCFALRIA I YDEGWMAEHMLIM VT+PKGEE+++AAAFPSACG
Sbjct: 248 SFGSGYGGNSLLGKKCFALRIAMNIGYDEGWMAEHMLIMGVTSPKGEERFVAAAFPSACG 307
Query: 545 KTNMAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMK 724
KTN+AMLEP++PGWKV+V+GDDIAWM+F G L AINPE GFFGVAPGT++KTNP AM
Sbjct: 308 KTNLAMLEPTIPGWKVRVIGDDIAWMKFGADGRLYAINPEYGFFGVAPGTSHKTNPMAMA 367
Query: 725 TFQKNSIFTNVAETSDGSYYWEGL 796
+FQ+N+IFTNVAET+DG Y+WEGL
Sbjct: 368 SFQENTIFTNVAETADGEYFWEGL 391
>sp|Q8HYZ4|PPCKC_BOVIN Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 368 bits (945), Expect = e-102
Identities = 171/261 (65%), Positives = 202/261 (77%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E R GCM GR MY+IPFSMGP+GSPLSKIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKAFNIRFPGCMKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVTSMRI 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ V LGD FVKC+HSVGCP P + ++N+W CNPE TLIAHLPD R
Sbjct: 173 MTRMGTSVLEALGDGEFVKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALR+A R+A +EGW+AEHMLI+ +TNPKG++KY AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRMASRLAKEEGWLAEHMLILGITNPKGQKKYFAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ P+LPGWKV+ VGDDIAWM+FD+ G LRAINPE GFFGVAPGT+ +TNPNA+KT Q
Sbjct: 293 LAMMNPTLPGWKVECVGDDIAWMKFDQQGNLRAINPENGFFGVAPGTSVRTNPNAIKTIQ 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|Q9Z2V4|PPCKC_MOUSE Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 368 bits (944), Expect = e-101
Identities = 171/261 (65%), Positives = 202/261 (77%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E R GCM GR MY+IPFSMGP+GSPL+KIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRI 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ V LGD F+KC+HSVGCP P + ++N+W CNPE TLIAHLPD R
Sbjct: 173 MTRMGISVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALRIA R+A +EGW+AEHMLI+ +TNP+G++KY+AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ PSLPGWKV+ VGDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT Q
Sbjct: 293 LAMMNPSLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQ 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|P07379|PPCKC_RAT Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 367 bits (943), Expect = e-101
Identities = 170/261 (65%), Positives = 202/261 (77%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E R GCM GR MY+IPFSMGP+GSPL+KIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRI 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ V LGD F+KC+HSVGCP P + ++N+W CNPE TLIAHLPD R
Sbjct: 173 MTRMGTSVLEALGDGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALRIA R+A +EGW+AEHMLI+ +TNP+G++KY+AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRIASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ P+LPGWKV+ VGDDIAWM+FD G LRAINPE GFFGVAPGT+ KTNPNA+KT Q
Sbjct: 293 LAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQ 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|P05153|PPCKC_CHICK Phosphoenolpyruvate carboxykinase, cytosolic [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-C)
Length = 622
Score = 365 bits (937), Expect = e-101
Identities = 173/261 (66%), Positives = 199/261 (76%)
Frame = +2
Query: 14 LGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSMRV 193
LG+WM+ E R GCM GR MY+IPFSMGPIGSPL+KIGI+LTDS YVV SMR+
Sbjct: 113 LGRWMSEEDFEKAFNTRFPGCMQGRTMYVIPFSMGPIGSPLAKIGIELTDSPYVVASMRM 172
Query: 194 MTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXXXX 373
MTR+ LG+ FVKC+HSVGCP P +IN+WPCNPE TLIAHLPD R
Sbjct: 173 MTRMGTAALKALGNGEFVKCLHSVGCPLPLKEPLINNWPCNPELTLIAHLPDRREIISFG 232
Query: 374 XXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGKTN 553
KKCFALRIA RIA +EGW+AEHMLI+ +TNP+GE+KY AAAFPSACGKTN
Sbjct: 233 SGYGGNSLLGKKCFALRIASRIAKEEGWLAEHMLILGITNPEGEKKYFAAAFPSACGKTN 292
Query: 554 MAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKTFQ 733
+AM+ PS PGWK++ VGDDIAWM+FDE G LRAINPE GFFGVAPGT+ KTNPNA+KT
Sbjct: 293 LAMMNPSRPGWKIECVGDDIAWMKFDELGNLRAINPENGFFGVAPGTSIKTNPNAIKTIF 352
Query: 734 KNSIFTNVAETSDGSYYWEGL 796
KN+IFTNVAETSDG YWEG+
Sbjct: 353 KNTIFTNVAETSDGGVYWEGI 373
>sp|Q8BH04|PPCKM_MOUSE Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 360 bits (925), Expect = 2e-99
Identities = 166/263 (63%), Positives = 199/263 (75%)
Frame = +2
Query: 8 GILGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSM 187
G LG WM+P+ V +R GCM GR+MY++PFSMGP+GSPLS+IG+QLTDS YVV SM
Sbjct: 129 GQLGNWMSPDEFQRAVDERFPGCMQGRIMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASM 188
Query: 188 RVMTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXX 367
R+MTR+ V LGD F+KC+HSVG P + WPCNPEKTLI H+PD+R
Sbjct: 189 RIMTRLGTPVLQALGDGDFIKCLHSVGQPLTGHGDPVGQWPCNPEKTLIGHVPDQREIVS 248
Query: 368 XXXXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGK 547
KKCFALRIA R+A DEGW+AEHMLI+ +TNP G+++Y+AAAFPSACGK
Sbjct: 249 FGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITNPAGKKRYVAAAFPSACGK 308
Query: 548 TNMAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKT 727
TN+AM+ P+LPGWKV+ VGDDIAWMRFD G+LRAINPE GFFGVAPGT+ TNPNAM T
Sbjct: 309 TNLAMMRPALPGWKVECVGDDIAWMRFDSEGQLRAINPENGFFGVAPGTSAATNPNAMAT 368
Query: 728 FQKNSIFTNVAETSDGSYYWEGL 796
Q N++FTNVAETSDG YWEG+
Sbjct: 369 IQSNTLFTNVAETSDGGVYWEGI 391
>sp|Q16822|PPCKM_HUMAN Phosphoenolpyruvate carboxykinase, mitochondrial precursor [GTP]
(Phosphoenolpyruvate carboxylase) (PEPCK-M)
Length = 640
Score = 352 bits (904), Expect = 5e-97
Identities = 166/263 (63%), Positives = 195/263 (74%)
Frame = +2
Query: 8 GILGQWMAPEALSDEVAQRLRGCMGGRMMYIIPFSMGPIGSPLSKIGIQLTDSNYVVLSM 187
G LG WM+P V +R GCM GR MY++PFSMGP+GSPLS+IG+QLTDS YVV SM
Sbjct: 129 GQLGNWMSPADFQRAVDERFPGCMQGRTMYVLPFSMGPVGSPLSRIGVQLTDSAYVVASM 188
Query: 188 RVMTRVSPLVWHYLGDKAFVKCVHSVGCPRPHPRKVINHWPCNPEKTLIAHLPDERXXXX 367
R+MTR+ V LGD FVKC+HSVG P + ++ WPCNPEKTLI H+PD+R
Sbjct: 189 RIMTRLGTPVLQALGDGDFVKCLHSVGQPLTGQGEPVSQWPCNPEKTLIGHVPDQREIIS 248
Query: 368 XXXXXXXXXXXXKKCFALRIAGRIAYDEGWMAEHMLIMSVTNPKGEEKYIAAAFPSACGK 547
KKCFALRIA R+A DEGW+AEHMLI+ +T+P G++ AAAFPSACGK
Sbjct: 249 FGSGYGGNSLLGKKCFALRIASRLARDEGWLAEHMLILGITSPAGKKALCAAAFPSACGK 308
Query: 548 TNMAMLEPSLPGWKVQVVGDDIAWMRFDEHGELRAINPEAGFFGVAPGTNYKTNPNAMKT 727
TN+AM+ P+LPGWKV+ VGDDIAWMRFD G LRAINPE GFFGVAPGT+ TNPNAM T
Sbjct: 309 TNLAMMRPALPGWKVECVGDDIAWMRFDSEGRLRAINPENGFFGVAPGTSATTNPNAMAT 368
Query: 728 FQKNSIFTNVAETSDGSYYWEGL 796
Q N+IFTNVAETSDG YWEG+
Sbjct: 369 IQSNTIFTNVAETSDGGVYWEGI 391
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,626,669
Number of Sequences: 369166
Number of extensions: 2187038
Number of successful extensions: 5065
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4934
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)