Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_I03
(473 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (U... 33 0.25
sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kina... 33 0.25
sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein ... 33 0.33
sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor comp... 32 0.57
sp|P25977|UBF1_RAT Nucleolar transcription factor 1 (Upstre... 32 0.74
sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upst... 31 1.3
sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kina... 31 1.3
sp|P25979|UBF1A_XENLA Nucleolar transcription factor 1-A (U... 31 1.7
sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein... 31 1.7
sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor 31 1.7
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
(UBF-1-B) (xUBF-2)
Length = 701
Score = 33.5 bits (75), Expect = 0.25
Identities = 23/101 (22%), Positives = 47/101 (46%)
Frame = +2
Query: 5 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXX 184
K VI+ K+ D E+ ++DE E D +D +D E+ +++GD ++
Sbjct: 607 KLVIQSKSDDDEDDEDDEDEED----DDDDDDEDKEDSSEDGDSSDSSSDEDSEEGEENE 662
Query: 185 XXXXXXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 307
E E+ + + +GSS+ + + DS++++ N
Sbjct: 663 DEEDEEDDDEDNEED--DDDNESGSSSSSSSSADSSDSDSN 701
>sp|P24788|CD2L1_MOUSE PITSLRE serine/threonine-protein kinase CDC2L1
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 1)
Length = 784
Score = 33.5 bits (75), Expect = 0.25
Identities = 22/90 (24%), Positives = 39/90 (43%)
Frame = +2
Query: 32 DSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXXXXXXS 211
D+ +E ++ LSDL DI DSE K + + + + S
Sbjct: 247 DNRKPVKEEKVEERDLLSDLQDISDSERKTSSAESSSAES----------------GSGS 290
Query: 212 EKGTEEHVKEKDCNGSSAKVTENGDSAENE 301
E+ EE +E++ GS+++ +E + E E
Sbjct: 291 EEEEEEEEEEEEEEGSTSEESEEEEEEEEE 320
>sp|Q6FSW2|RAD52_CANGA DNA repair and recombination protein RAD52
Length = 505
Score = 33.1 bits (74), Expect = 0.33
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 35 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNG 130
S +DND P K+Q+L++ N I D+ + NG
Sbjct: 181 SNTIDNDNPAVKRQKLNNQNSIPDTNKVKYNG 212
>sp|Q960E8|TF2H1_DROME TFIIH basal transcription factor complex subunit 1
Length = 585
Score = 32.3 bits (72), Expect = 0.57
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 35 SENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDA 139
S+ VD DEP++KKQRL + D + GDD+
Sbjct: 361 SDQVDKDEPQSKKQRLMEKIHYVDLGDPILEGDDS 395
>sp|P25977|UBF1_RAT Nucleolar transcription factor 1 (Upstream binding factor 1)
(UBF-1)
Length = 764
Score = 32.0 bits (71), Expect = 0.74
Identities = 19/97 (19%), Positives = 42/97 (43%)
Frame = +2
Query: 17 EKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXX 196
E++ D EN D+ E S ++ +D +E + DD ++D+
Sbjct: 691 EEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEDDDDDEDDDED-------------- 736
Query: 197 XXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 307
++ ++ + GSS+ + +GDS++++ N
Sbjct: 737 ---------DDEDEDNESEGSSSSSSSSGDSSDSDSN 764
>sp|P17480|UBF1_HUMAN Nucleolar transcription factor 1 (Upstream binding factor 1)
(UBF-1) (Autoantigen NOR-90)
Length = 764
Score = 31.2 bits (69), Expect = 1.3
Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Frame = +2
Query: 32 DSENVDNDEPETKKQRLSDLNDIKDS-----EEKAQNGDDAEEDQXXXXXXXXXXXXXXX 196
D ++ D DE E + D DS E+++++GD+ EED
Sbjct: 684 DEDDEDEDEEEEDDENGDSSEDGGDSSESSSEDESEDGDENEEDDEDE------------ 731
Query: 197 XXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAENEVN 307
+ ++ ++ + GSS+ + +GDS++++ N
Sbjct: 732 ----DDDEDDDEDEDNESEGSSSSSSSSGDSSDSDSN 764
>sp|Q9UQ88|CD2L2_HUMAN PITSLRE serine/threonine-protein kinase CDC2L2
(Galactosyltransferase-associated protein kinase
p58/GTA) (Cell division cycle 2-like protein kinase 2)
(CDK11)
Length = 780
Score = 31.2 bits (69), Expect = 1.3
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 8/120 (6%)
Frame = +2
Query: 53 DEPETKKQRLSDLNDIKDSEEK--------AQNGDDAEEDQXXXXXXXXXXXXXXXXXXX 208
+E ++ LSDL DI DSE K A++G +EE++
Sbjct: 255 EEKMEERDLLSDLQDISDSERKTSSAESSSAESGSGSEEEE-------EEEEEEEEEGST 307
Query: 209 SEKGTEEHVKEKDCNGSSAKVTENGDSAENEVNA*CHIECQLSVQLNDRDVKHLVFVISS 388
SE+ EE +E++ GS+++ E + + EV+ E ++S + HL+ V S
Sbjct: 308 SEESEEEEEEEEEETGSNSE--EASEQSAEEVS-----EEEMSEDEERENENHLLVVPES 360
>sp|P25979|UBF1A_XENLA Nucleolar transcription factor 1-A (Upstream binding factor 1-A)
(UBF-1-A) (xUBF-1)
Length = 677
Score = 30.8 bits (68), Expect = 1.7
Identities = 23/105 (21%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = +2
Query: 5 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXX 184
K V + K+ D + D+D+ + D ++ +D E+ +++GD +E
Sbjct: 585 KLVAQSKSDDDDEDDDDDEDED----DDDDEDEDKEDSSEDGDSSESSS--------DED 632
Query: 185 XXXXXXXXSEKGTEEHVKEKDC----NGSSAKVTENGDSAENEVN 307
E+G E+ +E+D +GSS+ + + DS++++ N
Sbjct: 633 SEDGEENEDEEGEEDEDEEEDDDDNESGSSSSSSSSADSSDSDSN 677
>sp|P09346|KNOB_PLAFG Knob-associated histidine-rich protein precursor (KAHRP) (KP)
Length = 634
Score = 30.8 bits (68), Expect = 1.7
Identities = 20/94 (21%), Positives = 37/94 (39%)
Frame = +2
Query: 17 EKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQXXXXXXXXXXXXXXX 196
EKK ++ D+D + K ++ D D + + K D E+ +
Sbjct: 374 EKKKKSKKHKDHDGEKKKSKKHKDNEDAESVKSKKHKSHDCEKKKSKKHKDNEDAESVKS 433
Query: 197 XXXXSEKGTEEHVKEKDCNGSSAKVTENGDSAEN 298
EKG E+H +K C+ + + +N + N
Sbjct: 434 KKSVKEKG-EKHNGKKPCSKKTNEENKNKEKTNN 466
>sp|P13816|GARP_PLAFF Glutamic acid-rich protein precursor
Length = 678
Score = 30.8 bits (68), Expect = 1.7
Identities = 13/49 (26%), Positives = 29/49 (59%)
Frame = +2
Query: 5 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNGDDAEEDQ 151
+E E++ + E + +E E +++ + D +D ++ ++ DDAEED+
Sbjct: 578 EEEEEEEEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDE 626
Score = 28.5 bits (62), Expect = 8.2
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 5 KEVIEKKTVDSENVDNDEPETKKQRLSDLNDIKDSEEKAQNG-DDAEED 148
+E E++ + E + +E E + + D +D ++ E+ A+ DDAEED
Sbjct: 584 EEEEEEEEEEEEEEEEEEEEEEDEDEEDEDDAEEDEDDAEEDEDDAEED 632
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,632,615
Number of Sequences: 369166
Number of extensions: 487100
Number of successful extensions: 2986
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2841
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)