Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_I02
(753 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 116 6e-26
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 115 1e-25
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 98 3e-20
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 97 4e-20
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 92 1e-18
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 86 1e-16
sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.003
sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5) 40 0.007
sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced ... 34 0.48
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 116 bits (291), Expect = 6e-26
Identities = 68/201 (33%), Positives = 97/201 (48%), Gaps = 28/201 (13%)
Frame = +2
Query: 29 LCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPFGD---IQES--- 190
LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P D +Q +
Sbjct: 13 LCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSDSASVQRADAG 72
Query: 191 ---------LIHEDIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSD-ISNSETNSVA 340
E V I T T S+ + + SV+
Sbjct: 73 LNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSVS 132
Query: 341 SASSV------------KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKV 484
SS KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK
Sbjct: 133 QPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKA 192
Query: 485 DAENAIRKANPRIVSNKVAKI 547
+A IRK NP +V+ K+ +I
Sbjct: 193 EAAAKIRKENPVVVAEKIQRI 213
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 115 bits (289), Expect = 1e-25
Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 29/202 (14%)
Frame = +2
Query: 29 LCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPFGDIQESLIHEDI 208
LC GCG++G+ +G+CS CYKE ++ +N+ +++ A+ + P D S+ D
Sbjct: 13 LCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPTSD-SASVQRADT 71
Query: 209 ETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSE-----------------TNSV 337
+ VT + IS + + SV
Sbjct: 72 SLNNCEGAAGSTSEKSRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEPVVTQPSPSV 131
Query: 338 ASASSV------------KKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYK 481
+ S+ KKNRC +CRKKVGLTGF CRCG +FC HRYSD H+C +DYK
Sbjct: 132 SQPSTSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 191
Query: 482 VDAENAIRKANPRIVSNKVAKI 547
+A IRK NP +V+ K+ +I
Sbjct: 192 AEAAAKIRKENPVVVAEKIQRI 213
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 97.8 bits (242), Expect = 3e-20
Identities = 54/174 (31%), Positives = 85/174 (48%)
Frame = +2
Query: 26 QLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPFGDIQESLIHED 205
+LC GCG+FGS + LCS+CY+ + + T+ A ++ SL
Sbjct: 17 KLCDNGCGFFGSPSNMNLCSKCYRSLRAEEDQ------TAVAK------AAVKNSL---K 61
Query: 206 IETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVASASSVKKNRCQLCRK 385
+ + S+I +VT + + ++ + + S NRC C K
Sbjct: 62 LPSCSIIAPGQKHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNK 121
Query: 386 KVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 547
KVG+ GF C+CG FC +HRY + H C+FD+K +AI KANP + ++KV +I
Sbjct: 122 KVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 97.4 bits (241), Expect = 4e-20
Identities = 59/175 (33%), Positives = 82/175 (46%), Gaps = 1/175 (0%)
Frame = +2
Query: 26 QLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYN-EKPFGDIQESLIHE 202
+LC GCG+FGS + LCS+CY++ E + N KP Q+S +
Sbjct: 17 KLCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQS---Q 73
Query: 203 DIETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVASASSVKKNRCQLCR 382
+I T+ V+ +G ++ S + RC C
Sbjct: 74 EI-TQGVLG-------------------SGSSSSSTRGGDSAAAPLDPPKSTATRCLSCN 113
Query: 383 KKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 547
KKVG+TGF CRCG FC HRY +SH C FD+K A AI KANP + ++KV +I
Sbjct: 114 KKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 92.4 bits (228), Expect = 1e-18
Identities = 54/174 (31%), Positives = 79/174 (45%)
Frame = +2
Query: 26 QLCKMGCGYFGSSNFDGLCSQCYKEKEKQFENNHKLNNTSFATYNEKPFGDIQESLIHED 205
+LC CG+FGSS LCS CY + + + + +T ++ + ++ +
Sbjct: 14 RLCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESSLSPVIAPVLENYAAELE 73
Query: 206 IETESVIXXXXXXXXXXXXXXXXXXIVTGDTNKSDISNSETNSVASASSVKKNRCQLCRK 385
I T T T + T + + NRC +CRK
Sbjct: 74 IPT------------------------TKKTEEKKPIQIPTEQPSPPQ--RPNRCTVCRK 107
Query: 386 KVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKANPRIVSNKVAKI 547
+VGLTGF CRCG FC +HRY + H CTFD+K I KANP +++ K+ KI
Sbjct: 108 RVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 85.9 bits (211), Expect = 1e-16
Identities = 38/70 (54%), Positives = 49/70 (70%)
Frame = +2
Query: 335 VASASSVKKNRCQLCRKKVGLTGFACRCGGMFCSAHRYSDSHSCTFDYKVDAENAIRKAN 514
VA S+V NRC CRK+VGLTGF CRCG +FC HRYSD H C++DYK A +AI + N
Sbjct: 96 VAKTSAV--NRCSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDN 153
Query: 515 PRIVSNKVAK 544
P + + K+ +
Sbjct: 154 PVVRAAKIVR 163
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 492
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +2
Query: 29 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 133
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 57
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 708
Score = 41.2 bits (95), Expect = 0.003
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Frame = +2
Query: 29 LCKMGCGYFGSSNFDGLCSQCYKE-----KEKQFENNHKL 133
LCK GCGY+G+ + G CS+C++E ++KQ + + +L
Sbjct: 156 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWEL 195
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 491
Score = 40.0 bits (92), Expect = 0.007
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +2
Query: 29 LCKMGCGYFGSSNFDGLCSQCYKEK 103
LCK GCGY+G+ + G CS+C++E+
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREE 42
>sp|Q60769|TNAP3_MOUSE Tumor necrosis factor, alpha-induced protein 3 (Putative DNA
binding protein A20) (Zinc finger protein A20)
Length = 775
Score = 33.9 bits (76), Expect = 0.48
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 24/89 (26%)
Frame = +2
Query: 23 SQLCKMGCGYFGSSNFDGLCSQC---YKEKEK-------------QFENN--------HK 130
S+ K GC YFG+ G C+ C Y+E ++ +F+NN
Sbjct: 590 SKCRKAGCMYFGTPENKGFCTLCFIEYRENKQSVTASAKAGSPAPRFQNNVPCLGRECGT 649
Query: 131 LNNTSFATYNEKPFGDIQESLIHEDIETE 217
L +T F Y +K F + Q HE TE
Sbjct: 650 LGSTMFEGYCQKCFIEAQNQRFHEARRTE 678
Score = 30.4 bits (67), Expect = 5.3
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +2
Query: 8 PQQNFSQLCKM-GCGYFGSSNFDGLCSQCYKEKE 106
P++ Q C+ C +FG++ +G C++CY+ K+
Sbjct: 739 PEEPPKQRCRAPACDHFGNAKCNGYCNECYQFKQ 772
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,346,333
Number of Sequences: 369166
Number of extensions: 1422894
Number of successful extensions: 4003
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4001
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)